mRNA_S-dermatodea_contig88400.16964.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig88400.16964.1
Unique NamemRNA_S-dermatodea_contig88400.16964.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig88400.16964.1 vs. uniprot
Match: D8LNT6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNT6_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 4.680e-17
Identity = 44/59 (74.58%), Postives = 52/59 (88.14%), Query Frame = 1 
Query:    1 QGASRIYRRLLRPYLEQYEGDIDNGLEGMRVEATRRITSLGASAASEIAKAVTRQSSSA 177
            QGAS+IYRRLL PYL++YE +ID+GLE MR  ATRRI SLGASAA+EIAKAVT+Q S+A
Sbjct:   83 QGASQIYRRLLHPYLDKYEDNIDSGLEEMRAGATRRIQSLGASAATEIAKAVTKQGSTA 141
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig88400.16964.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LNT6_ECTSI4.680e-1774.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig88400contigS-dermatodea_contig88400:447..623 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.0
Seed ortholog evalue2.6e-14
Seed eggNOG ortholog2880.D8LNT6
KEGG koko:K17279
EggNOG free text desc.mitotic nuclear envelope reassembly
EggNOG OGsCOG5052@1,KOG1726@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04147
Hectar predicted targeting categoryother localisation
Exons1
Model size177
Cds size177
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925369.4784484-CDS-S-dermatodea_contig88400:446..6231622925369.4784484-CDS-S-dermatodea_contig88400:446..623Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig88400 447..623 -
1694079886.796801-CDS-S-dermatodea_contig88400:446..6231694079886.796801-CDS-S-dermatodea_contig88400:446..623Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig88400 447..623 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig88400.16964.1prot_S-dermatodea_contig88400.16964.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig88400 447..623 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig88400.16964.1

>prot_S-dermatodea_contig88400.16964.1 ID=prot_S-dermatodea_contig88400.16964.1|Name=mRNA_S-dermatodea_contig88400.16964.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=59bp
QGASRIYRRLLRPYLEQYEGDIDNGLEGMRVEATRRITSLGASAASEIAK
AVTRQSSSA
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mRNA from alignment at S-dermatodea_contig88400:447..623-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig88400.16964.1 ID=mRNA_S-dermatodea_contig88400.16964.1|Name=mRNA_S-dermatodea_contig88400.16964.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=177bp|location=Sequence derived from alignment at S-dermatodea_contig88400:447..623- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGGCGCGAGCCGGATTTATAGACGGCTGCTGCGGCCGTACCTGGAGCA
GTACGAGGGGGACATTGACAATGGTCTGGAGGGGATGAGGGTCGAGGCCA
CCCGCCGGATCACGTCGCTGGGGGCTAGCGCGGCGAGCGAGATCGCGAAG
GCGGTGACGAGGCAGAGCTCTTCAGCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig88400:447..623-

>mRNA_S-dermatodea_contig88400.16964.1 ID=mRNA_S-dermatodea_contig88400.16964.1|Name=mRNA_S-dermatodea_contig88400.16964.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=354bp|location=Sequence derived from alignment at S-dermatodea_contig88400:447..623- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGGCGCGAGCCGGATTTATAGACGGCTGCTGCGGCCGTACCTGGAGCA
GTACGAGGGGGACATTGACAATGGTCTGGAGGGGATGAGGGTCGAGGCCA
CCCGCCGGATCACGTCGCTGGGGGCTAGCGCGGCGAGCGAGATCGCGAAG
GCGGTGACGAGGCAGAGCTCTTCAGCGCAGGGCGCGAGCCGGATTTATAG
ACGGCTGCTGCGGCCGTACCTGGAGCAGTACGAGGGGGACATTGACAATG
GTCTGGAGGGGATGAGGGTCGAGGCCACCCGCCGGATCACGTCGCTGGGG
GCTAGCGCGGCGAGCGAGATCGCGAAGGCGGTGACGAGGCAGAGCTCTTC
AGCG
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