mRNA_S-dermatodea_contig884.16963.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig884.16963.1 vs. uniprot
Match: D7FXR8_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXR8_ECTSI) HSP 1 Score: 103 bits (256), Expect = 5.890e-24 Identity = 57/78 (73.08%), Postives = 61/78 (78.21%), Query Frame = 1
Query: 1 VTYDVSASGDGMDLSQAMALAGPGDSVSLADGTYDRALVSVTSGEAGSPITVVGGSGAIINGDYSSRSVLIQHSYITL 234
VTYD SA GDG DL +AM LA GD+V+L DGTYD ALVSV GE GSPITV GG GAII G YSSRSVLI HS+ITL
Sbjct: 40 VTYDASADGDGFDLYEAMDLAQAGDTVNLQDGTYDSALVSVRDGEFGSPITVSGGPGAIIKGSYSSRSVLITHSFITL 117
BLAST of mRNA_S-dermatodea_contig884.16963.1 vs. uniprot
Match: A0A6H5LEX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEX7_9PHAE) HSP 1 Score: 101 bits (252), Expect = 1.370e-23 Identity = 56/78 (71.79%), Postives = 61/78 (78.21%), Query Frame = 1
Query: 1 VTYDVSASGDGMDLSQAMALAGPGDSVSLADGTYDRALVSVTSGEAGSPITVVGGSGAIINGDYSSRSVLIQHSYITL 234
VT+D SA GDG DL +AM LA GD+V+L DGTYD ALVSV GE GSPITV GG GAII G YSSRSVLI HS+ITL
Sbjct: 40 VTFDASADGDGFDLYEAMDLAQAGDTVNLQDGTYDSALVSVRGGEFGSPITVSGGPGAIIKGSYSSRSVLITHSFITL 117
BLAST of mRNA_S-dermatodea_contig884.16963.1 vs. uniprot
Match: A0A6H5KT05_9PHAE (Beta_helix domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KT05_9PHAE) HSP 1 Score: 69.3 bits (168), Expect = 4.020e-12 Identity = 34/77 (44.16%), Postives = 52/77 (67.53%), Query Frame = 1
Query: 4 TYDVSASGDGMDLSQAMALAGPGDSVSLADGTYDRALVSVTSGEAGSPITVVGGSGAIINGDYSSRSVLIQHSYITL 234
T+D S G ++ A+A AG GD+V LADGTY+ A+V+V GE+G+P+ + GG A++N + V +QHS++TL
Sbjct: 15 TFDASPDGVPYSIASALAEAGAGDTVVLADGTYNEAIVTVQGGESGNPLIITGGRDALVNAGDDGKVVYVQHSWVTL 91
BLAST of mRNA_S-dermatodea_contig884.16963.1 vs. uniprot
Match: A0A6H5K1D2_9PHAE (Beta_helix domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1D2_9PHAE) HSP 1 Score: 67.8 bits (164), Expect = 1.990e-11 Identity = 40/83 (48.19%), Postives = 56/83 (67.47%), Query Frame = 1
Query: 7 YDVSASGDGMDLSQAMALAGPGDSVSLADGTYDRALVSVTSGEAGSPITVVGGSGAIIN---GD----YSSRSVLIQHSYITL 234
Y+VS G+ M L+ A+ +AG GD VSLADGTY +V++ +G G+P+ + GG GAIIN GD +S + V I+HSY+TL
Sbjct: 35 YEVSPDGNPMTLTAALEVAGAGDIVSLADGTYREPIVTMNAGVEGNPLVITGGRGAIINYFSGDRSLMWSQKVVDIRHSYVTL 117
BLAST of mRNA_S-dermatodea_contig884.16963.1 vs. uniprot
Match: UPI000FEBAC41 (right-handed parallel beta-helix repeat-containing protein n=1 Tax=Streptomyces cavernae TaxID=2259034 RepID=UPI000FEBAC41) HSP 1 Score: 52.4 bits (124), Expect = 5.210e-6 Identity = 28/54 (51.85%), Postives = 35/54 (64.81%), Query Frame = 1
Query: 28 DGMDLSQAMALAGPGDSVSLADGTYDRALVSVTSGEAGSPITVVGGSGAIINGD 189
D L QA+A AGPGDS+ LADGTY + T G A P+ V GGS A+I+G+
Sbjct: 102 DSASLEQALADAGPGDSIRLADGTYQGRFKATTPGTADRPVYVCGGSAAVIDGE 155
BLAST of mRNA_S-dermatodea_contig884.16963.1 vs. uniprot
Match: A0A6G4VEK0_9ACTN (Uncharacterized protein n=4 Tax=Streptomyces TaxID=1883 RepID=A0A6G4VEK0_9ACTN) HSP 1 Score: 49.7 bits (117), Expect = 4.660e-5 Identity = 26/53 (49.06%), Postives = 34/53 (64.15%), Query Frame = 1
Query: 28 DGMDLSQAMALAGPGDSVSLADGTYDRALVSVTSGEAGSPITVVGGSGAIING 186
D L +A+A AGPGDS+ LAD TY+ + T G A P+ V GG GA+I+G
Sbjct: 102 DAASLEEALADAGPGDSIRLADATYEGRFKATTPGTADQPVYVCGGPGAVIDG 154
BLAST of mRNA_S-dermatodea_contig884.16963.1 vs. uniprot
Match: UPI0006ADB889 (right-handed parallel beta-helix repeat-containing protein n=1 Tax=Streptomyces sp. NRRL WC-3618 TaxID=1519490 RepID=UPI0006ADB889) HSP 1 Score: 48.9 bits (115), Expect = 8.320e-5 Identity = 27/53 (50.94%), Postives = 35/53 (66.04%), Query Frame = 1
Query: 28 DGMDLSQAMALAGPGDSVSLADGTYDRALVSVTSGEAGSPITVVGGSGAIING 186
D L QA+A A PGDS+SLA+GTY + SG A P+ + GGSGA+I+G
Sbjct: 17 DATTLEQALAQAQPGDSISLANGTYVGNFTAEISGTAAKPVFLCGGSGAVIDG 69
BLAST of mRNA_S-dermatodea_contig884.16963.1 vs. uniprot
Match: A0A6G3QIV4_9ACTN (Beta_helix domain-containing protein n=1 Tax=Streptomyces sp. SID12488 TaxID=2706040 RepID=A0A6G3QIV4_9ACTN) HSP 1 Score: 48.9 bits (115), Expect = 8.730e-5 Identity = 28/53 (52.83%), Postives = 35/53 (66.04%), Query Frame = 1
Query: 28 DGMDLSQAMALAGPGDSVSLADGTYDRALVSVTSGEAGSPITVVGGSGAIING 186
D L QA+A A PGDS+SLA+GTY + SG A PI + GGSGA+I+G
Sbjct: 114 DAATLEQALAQAQPGDSISLANGTYAGNFTTKLSGTAEKPIFLCGGSGAVIDG 166
BLAST of mRNA_S-dermatodea_contig884.16963.1 vs. uniprot
Match: UPI001C2BEDE8 (right-handed parallel beta-helix repeat-containing protein n=2 Tax=Streptomyces TaxID=1883 RepID=UPI001C2BEDE8) HSP 1 Score: 48.9 bits (115), Expect = 8.730e-5 Identity = 25/53 (47.17%), Postives = 35/53 (66.04%), Query Frame = 1
Query: 28 DGMDLSQAMALAGPGDSVSLADGTYDRALVSVTSGEAGSPITVVGGSGAIING 186
D L +A+A AGPGDS+ LADGTY + T G A +P+ + GG GA+++G
Sbjct: 116 DAPSLEEALAQAGPGDSIRLADGTYTGRFTAKTPGLAENPVFLCGGPGAVVDG 168 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig884.16963.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig884.16963.1 >prot_S-dermatodea_contig884.16963.1 ID=prot_S-dermatodea_contig884.16963.1|Name=mRNA_S-dermatodea_contig884.16963.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=80bp VTYDVSASGDGMDLSQAMALAGPGDSVSLADGTYDRALVSVTSGEAGSPIback to top mRNA from alignment at S-dermatodea_contig884:6139..6378+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig884.16963.1 ID=mRNA_S-dermatodea_contig884.16963.1|Name=mRNA_S-dermatodea_contig884.16963.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=240bp|location=Sequence derived from alignment at S-dermatodea_contig884:6139..6378+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig884:6139..6378+ >mRNA_S-dermatodea_contig884.16963.1 ID=mRNA_S-dermatodea_contig884.16963.1|Name=mRNA_S-dermatodea_contig884.16963.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=480bp|location=Sequence derived from alignment at S-dermatodea_contig884:6139..6378+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |