mRNA_S-dermatodea_contig884.16963.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig884.16963.1
Unique NamemRNA_S-dermatodea_contig884.16963.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig884.16963.1 vs. uniprot
Match: D7FXR8_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXR8_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 5.890e-24
Identity = 57/78 (73.08%), Postives = 61/78 (78.21%), Query Frame = 1
Query:    1 VTYDVSASGDGMDLSQAMALAGPGDSVSLADGTYDRALVSVTSGEAGSPITVVGGSGAIINGDYSSRSVLIQHSYITL 234
            VTYD SA GDG DL +AM LA  GD+V+L DGTYD ALVSV  GE GSPITV GG GAII G YSSRSVLI HS+ITL
Sbjct:   40 VTYDASADGDGFDLYEAMDLAQAGDTVNLQDGTYDSALVSVRDGEFGSPITVSGGPGAIIKGSYSSRSVLITHSFITL 117          
BLAST of mRNA_S-dermatodea_contig884.16963.1 vs. uniprot
Match: A0A6H5LEX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEX7_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 1.370e-23
Identity = 56/78 (71.79%), Postives = 61/78 (78.21%), Query Frame = 1
Query:    1 VTYDVSASGDGMDLSQAMALAGPGDSVSLADGTYDRALVSVTSGEAGSPITVVGGSGAIINGDYSSRSVLIQHSYITL 234
            VT+D SA GDG DL +AM LA  GD+V+L DGTYD ALVSV  GE GSPITV GG GAII G YSSRSVLI HS+ITL
Sbjct:   40 VTFDASADGDGFDLYEAMDLAQAGDTVNLQDGTYDSALVSVRGGEFGSPITVSGGPGAIIKGSYSSRSVLITHSFITL 117          
BLAST of mRNA_S-dermatodea_contig884.16963.1 vs. uniprot
Match: A0A6H5KT05_9PHAE (Beta_helix domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KT05_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 4.020e-12
Identity = 34/77 (44.16%), Postives = 52/77 (67.53%), Query Frame = 1
Query:    4 TYDVSASGDGMDLSQAMALAGPGDSVSLADGTYDRALVSVTSGEAGSPITVVGGSGAIINGDYSSRSVLIQHSYITL 234
            T+D S  G    ++ A+A AG GD+V LADGTY+ A+V+V  GE+G+P+ + GG  A++N     + V +QHS++TL
Sbjct:   15 TFDASPDGVPYSIASALAEAGAGDTVVLADGTYNEAIVTVQGGESGNPLIITGGRDALVNAGDDGKVVYVQHSWVTL 91          
BLAST of mRNA_S-dermatodea_contig884.16963.1 vs. uniprot
Match: A0A6H5K1D2_9PHAE (Beta_helix domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1D2_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 1.990e-11
Identity = 40/83 (48.19%), Postives = 56/83 (67.47%), Query Frame = 1
Query:    7 YDVSASGDGMDLSQAMALAGPGDSVSLADGTYDRALVSVTSGEAGSPITVVGGSGAIIN---GD----YSSRSVLIQHSYITL 234
            Y+VS  G+ M L+ A+ +AG GD VSLADGTY   +V++ +G  G+P+ + GG GAIIN   GD    +S + V I+HSY+TL
Sbjct:   35 YEVSPDGNPMTLTAALEVAGAGDIVSLADGTYREPIVTMNAGVEGNPLVITGGRGAIINYFSGDRSLMWSQKVVDIRHSYVTL 117          
BLAST of mRNA_S-dermatodea_contig884.16963.1 vs. uniprot
Match: UPI000FEBAC41 (right-handed parallel beta-helix repeat-containing protein n=1 Tax=Streptomyces cavernae TaxID=2259034 RepID=UPI000FEBAC41)

HSP 1 Score: 52.4 bits (124), Expect = 5.210e-6
Identity = 28/54 (51.85%), Postives = 35/54 (64.81%), Query Frame = 1
Query:   28 DGMDLSQAMALAGPGDSVSLADGTYDRALVSVTSGEAGSPITVVGGSGAIINGD 189
            D   L QA+A AGPGDS+ LADGTY     + T G A  P+ V GGS A+I+G+
Sbjct:  102 DSASLEQALADAGPGDSIRLADGTYQGRFKATTPGTADRPVYVCGGSAAVIDGE 155          
BLAST of mRNA_S-dermatodea_contig884.16963.1 vs. uniprot
Match: A0A6G4VEK0_9ACTN (Uncharacterized protein n=4 Tax=Streptomyces TaxID=1883 RepID=A0A6G4VEK0_9ACTN)

HSP 1 Score: 49.7 bits (117), Expect = 4.660e-5
Identity = 26/53 (49.06%), Postives = 34/53 (64.15%), Query Frame = 1
Query:   28 DGMDLSQAMALAGPGDSVSLADGTYDRALVSVTSGEAGSPITVVGGSGAIING 186
            D   L +A+A AGPGDS+ LAD TY+    + T G A  P+ V GG GA+I+G
Sbjct:  102 DAASLEEALADAGPGDSIRLADATYEGRFKATTPGTADQPVYVCGGPGAVIDG 154          
BLAST of mRNA_S-dermatodea_contig884.16963.1 vs. uniprot
Match: UPI0006ADB889 (right-handed parallel beta-helix repeat-containing protein n=1 Tax=Streptomyces sp. NRRL WC-3618 TaxID=1519490 RepID=UPI0006ADB889)

HSP 1 Score: 48.9 bits (115), Expect = 8.320e-5
Identity = 27/53 (50.94%), Postives = 35/53 (66.04%), Query Frame = 1
Query:   28 DGMDLSQAMALAGPGDSVSLADGTYDRALVSVTSGEAGSPITVVGGSGAIING 186
            D   L QA+A A PGDS+SLA+GTY     +  SG A  P+ + GGSGA+I+G
Sbjct:   17 DATTLEQALAQAQPGDSISLANGTYVGNFTAEISGTAAKPVFLCGGSGAVIDG 69          
BLAST of mRNA_S-dermatodea_contig884.16963.1 vs. uniprot
Match: A0A6G3QIV4_9ACTN (Beta_helix domain-containing protein n=1 Tax=Streptomyces sp. SID12488 TaxID=2706040 RepID=A0A6G3QIV4_9ACTN)

HSP 1 Score: 48.9 bits (115), Expect = 8.730e-5
Identity = 28/53 (52.83%), Postives = 35/53 (66.04%), Query Frame = 1
Query:   28 DGMDLSQAMALAGPGDSVSLADGTYDRALVSVTSGEAGSPITVVGGSGAIING 186
            D   L QA+A A PGDS+SLA+GTY     +  SG A  PI + GGSGA+I+G
Sbjct:  114 DAATLEQALAQAQPGDSISLANGTYAGNFTTKLSGTAEKPIFLCGGSGAVIDG 166          
BLAST of mRNA_S-dermatodea_contig884.16963.1 vs. uniprot
Match: UPI001C2BEDE8 (right-handed parallel beta-helix repeat-containing protein n=2 Tax=Streptomyces TaxID=1883 RepID=UPI001C2BEDE8)

HSP 1 Score: 48.9 bits (115), Expect = 8.730e-5
Identity = 25/53 (47.17%), Postives = 35/53 (66.04%), Query Frame = 1
Query:   28 DGMDLSQAMALAGPGDSVSLADGTYDRALVSVTSGEAGSPITVVGGSGAIING 186
            D   L +A+A AGPGDS+ LADGTY     + T G A +P+ + GG GA+++G
Sbjct:  116 DAPSLEEALAQAGPGDSIRLADGTYTGRFTAKTPGLAENPVFLCGGPGAVVDG 168          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig884.16963.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7FXR8_ECTSI5.890e-2473.08FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A6H5LEX7_9PHAE1.370e-2371.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KT05_9PHAE4.020e-1244.16Beta_helix domain-containing protein n=2 Tax=Ectoc... [more]
A0A6H5K1D2_9PHAE1.990e-1148.19Beta_helix domain-containing protein n=1 Tax=Ectoc... [more]
UPI000FEBAC415.210e-651.85right-handed parallel beta-helix repeat-containing... [more]
A0A6G4VEK0_9ACTN4.660e-549.06Uncharacterized protein n=4 Tax=Streptomyces TaxID... [more]
UPI0006ADB8898.320e-550.94right-handed parallel beta-helix repeat-containing... [more]
A0A6G3QIV4_9ACTN8.730e-552.83Beta_helix domain-containing protein n=1 Tax=Strep... [more]
UPI001C2BEDE88.730e-547.17right-handed parallel beta-helix repeat-containing... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig884contigS-dermatodea_contig884:6139..6378 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPectin lyase fold
Ec32 orthologEc-00_011490.1
Exons1
Model size240
Cds size240
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925369.4373076-CDS-S-dermatodea_contig884:6138..63781622925369.4373076-CDS-S-dermatodea_contig884:6138..6378Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig884 6139..6378 +
1694079886.7853234-CDS-S-dermatodea_contig884:6138..63781694079886.7853234-CDS-S-dermatodea_contig884:6138..6378Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig884 6139..6378 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig884.16963.1prot_S-dermatodea_contig884.16963.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig884 6139..6378 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig884.16963.1

>prot_S-dermatodea_contig884.16963.1 ID=prot_S-dermatodea_contig884.16963.1|Name=mRNA_S-dermatodea_contig884.16963.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=80bp
VTYDVSASGDGMDLSQAMALAGPGDSVSLADGTYDRALVSVTSGEAGSPI
TVVGGSGAIINGDYSSRSVLIQHSYITLNV
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mRNA from alignment at S-dermatodea_contig884:6139..6378+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig884.16963.1 ID=mRNA_S-dermatodea_contig884.16963.1|Name=mRNA_S-dermatodea_contig884.16963.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=240bp|location=Sequence derived from alignment at S-dermatodea_contig884:6139..6378+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTCACCTACGACGTCTCTGCCAGCGGAGACGGCATGGATCTGTCGCAGGC GATGGCGCTGGCCGGCCCTGGCGACAGTGTCAGTCTGGCGGACGGCACCT ACGACCGAGCGCTCGTGTCTGTCACGAGCGGCGAGGCCGGGAGTCCTATC ACCGTGGTCGGGGGAAGTGGGGCCATCATCAATGGGGACTACAGCTCGCG CTCCGTCCTGATCCAGCACTCCTACATCACCCTCAACGTC
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Coding sequence (CDS) from alignment at S-dermatodea_contig884:6139..6378+

>mRNA_S-dermatodea_contig884.16963.1 ID=mRNA_S-dermatodea_contig884.16963.1|Name=mRNA_S-dermatodea_contig884.16963.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=480bp|location=Sequence derived from alignment at S-dermatodea_contig884:6139..6378+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTCACCTACGACGTCTCTGCCAGCGGAGACGGCATGGATCTGTCGCAGGC
GATGGCGCTGGCCGGCCCTGGCGACAGTGTCAGTCTGGCGGACGGCACCT
ACGACCGAGCGCTCGTGTCTGTCACGAGCGGCGAGGCCGGGAGTCCTATC
ACCGTGGTCGGGGGAAGTGGGGCCATCATCAATGGGGACTACAGCTCGCG
CTCCGTCCTGATCCAGCACTCCTACATCACCCTCAACGTCGTCACCTACG
ACGTCTCTGCCAGCGGAGACGGCATGGATCTGTCGCAGGCGATGGCGCTG
GCCGGCCCTGGCGACAGTGTCAGTCTGGCGGACGGCACCTACGACCGAGC
GCTCGTGTCTGTCACGAGCGGCGAGGCCGGGAGTCCTATCACCGTGGTCG
GGGGAAGTGGGGCCATCATCAATGGGGACTACAGCTCGCGCTCCGTCCTG
ATCCAGCACTCCTACATCACCCTCAACGTC
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