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Homology
BLAST of mRNA_S-dermatodea_contig8833.16961.1 vs. uniprot
Match: D8LJR5_ECTSI (Elongator complex protein 3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJR5_ECTSI) HSP 1 Score: 137 bits (345), Expect = 9.930e-36 Identity = 69/91 (75.82%), Postives = 78/91 (85.71%), Query Frame = 2
Query: 44 MAPPTAKDEVRHSASPDIESLVYDDAHEKRMPELRQLLDEILPLQKWKEIESRFVAFRKRAKFVPKKNVMYHLYKAQEVRNPALEKALVSK 316
MAPP +EVRHSASPDIESLVYD HE RMP L++LL+EILPL+ WKEIE RF+ FR++ KFVPKKNV+YHLY AQEVRN ALEKALVSK
Sbjct: 1 MAPPQVTEEVRHSASPDIESLVYDADHESRMPALKELLNEILPLRSWKEIEKRFIIFRRKEKFVPKKNVVYHLYMAQEVRNDALEKALVSK 91
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 137.9 |
| Seed ortholog evalue | 2.4e-30 |
| Seed eggNOG ortholog | 2880.D8LJR5 |
| EggNOG free text desc. | radical SAM domain protein |
| EggNOG OGs | COG1243@1,KOG2535@2759 |
| COG Functional cat. | BK |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | ELP3-like GNAT family acetyltransferase |
| Ec32 ortholog | Ec-12_002990.1 |
| Exons | 3 |
| Model size | 321 |
| Cds size | 276 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig8833.16961.1 >prot_S-dermatodea_contig8833.16961.1 ID=prot_S-dermatodea_contig8833.16961.1|Name=mRNA_S-dermatodea_contig8833.16961.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=92bp
MAPPTAKDEVRHSASPDIESLVYDDAHEKRMPELRQLLDEILPLQKWKEI
ESRFVAFRKRAKFVPKKNVMYHLYKAQEVRNPALEKALVSKQ back to topmRNA from alignment at S-dermatodea_contig8833:3742..6257+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-dermatodea_contig8833.16961.1 ID=mRNA_S-dermatodea_contig8833.16961.1|Name=mRNA_S-dermatodea_contig8833.16961.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2516bp|location=Sequence derived from alignment at S-dermatodea_contig8833:3742..6257+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGCACTGACCACTGACAACAGTCAGTATTACTTGGGCACACCATGGCGC
CTCCCACAGCGAAAGATGAGGTCAGGCACAGCGCATCTCCAGACATCGAG
AGCCTGGTGTACGACGATGCGCATGAGGTGCGGTTGGATCGAAAAGGGCG
TGTATATATGGCGGTGGTGTTGGCCTTCGAGGTTGATGCAAATTTGGCAA
AGCGCAGCGCAGGCGATGACGCTTCGTTGCTTTCATTGAGTTTAACTCTC
CGCAACGGCCAGCCACGAGCGCCCGGTGCGTCAGCCCGCCCGCGTCGGGC
CCAGGCGTGTGTGTTTCATCTTGACGTTTGCTTATGTTTGCTGTTGCTGT
TGTCAAAGTTATTCGGTATCATAGCGGTGATGACGGTGGTGGTGTGGTTG
GTTGTGCGGCTCGATTTGGCTTCCGCACACGCAGGCCTGCCAGTTTGTTC
GCGGCACTGGCGACGATTTATCTGGGCCATGGTGAGGCAAAGCAGGCCTG
TGCGTTTCCCCAGAGCTTCCACCCCACCACTGGGTGCACTTACTAGACCA
GGTAGGCGTGAGACCTCAGGCGCCGCCGTCCATTCCGGCGACTCCTGCCA
GCCATATCATAGCCAGCGCCGACGTGCGAGTTTTACAGCGTATAGTTTTC
GTGCGGGACTGTCAGATTTTACCATAAAATATACTCCGTACGAGTATAAT
ATTACGGATCGCCTCTTTTGTGATACTTCTACTATTGTACTGTTCTCCTG
CGCCTTATGTAGGGCGTACCAAGTACACCGTAAGCTAATCTACGAGAAGC
AAACATATCTACTCTGTATCCAGCTTCTTGGGCGTTGCACCCTTGGATCG
TCGTGCCCTGCGCGCTTGACCCACGATTTTTACTCACCAAATATTTTATA
TAGTGATGTACACCAACAAGCAATGATGCACGTACTTGAACAACCGGCAC
CTCTCTGTAACACACAAGTACTTGACTTTTACAGCAGAGCTCTGCTGGCC
AACCGAGCTGTTCTCAACGGCCAGCAGTATCGCACCCCGTGGCTTTGGCT
TTTGGACGGAAAAGCCTTGCTGCAAAGCCCACCAACAAAAGCCGCGCTGC
TGTCGTCGTCATGTTATATCCGTGCGGTTTGCTTCGACCCGATGTCGATG
TCCGACAGATTGTTGATAGTACTCTGTCTGTTGCACCTCGCGAACGCGTG
CGCCGCTTGTTATGATGCACGATAATGGTAACTCGATAGGGAGTGCTCTC
GGCATGGTCTTAGTCGGCCACACTGTACGGCTCATGCTGCTCGTGAATAT
TTCTGCTGGTATCATCTGTGTATTCCTCTATGTTTTGCTAAGGCGGTGTA
CCCGAGTCGTGGACCAATCGGTCATGAGCGCGAGCAATAAAACCATTCAA
AACCTAGTTTTAGCACAGCTGCAACGCTGCAACCGGTACATGCCTACTTG
TAGTTCAATAGAGCCCAACTCTCAGTCTTGAGCATCACATCATGTACATG
TTGGCCAATCACCAGCTCTTAATCGTTCATTTGTCCACACCTCTCCGCGC
GTTCGCTCCCGCCGCCTCTGCGCACGTGTGCCGCTCTCCCGCTGCTGCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCAGAAACGCATGCCCGAGCTACG
GCAGCTTCTCGACGAGATCCTTCCGCTGCAGAAGTGGAAGGAAATCGAGA
GCCGCTTCGTGGCGTTCCGCAAGCGGGCCAAGTTCGTGCCCAAGAAGAAC
GTGATGTACCACCTCTACAAGGCCCAGGAGGTGCGGGTGTTTTATGCCAC
TCGCGGGGCTGTGTGCGCGATTTGTTTTTGTTTCCAGTTGCTGTACAGGT
ACTTGCATGTTCGTTGAGAAGCACTTACCTATGTACGTCGTTCCGTCGAT
CGTCCGGTGCTATAATAATATAGTTATAATCACAATACTTGTGTACGTAA
AGTGCGAAGCCGGAGCTCCGCCCGCGTAGGGCAGTGCTTGGGTATGGCGG
GTCGTGATGTCGTCCCGATGTGTGGCCGACGCCGTGGCCGCGCACTAAAT
GTTGTTACGGCGAGCGGGTTTCCTGCAGAGTAGAGGGGGCGGGGGGTGAG
GCTGTGAAAAACACGGTTGGCTCTTTCCGCAAGCGCAAGGAACGGCTGGT
GATGCCATCATATGCACCAGCTTCCAGCCGAAGAAACTCCTACGCATGTC
CTACGCTGTCTAGAGGAACCTCTCACGCTATGCTGCGCTGTGCAAGGGTG
CGTTCGGTATCCGCCACCCCTTGCCACGACAAAATAGTTACGCTACACTT
GCAGCAAACGCACAACGCACGTCCATGTCCCAACGCCTGATAAGTCGTCA
GCACTGAGCACGACGTACCACAGCGCAACGGTGGGGCGCAAATGGTTGGA
GACCTGTAGTCACCCCTGCCGCCTCCCCCCCCCCCACACACACACACACA
CGTCCTAAAACTTTTGCATACCAGGTGCGAAACCCCGCGCTGGAGAAGGC
TCTCGTCAGCAAGCAG back to topCoding sequence (CDS) from alignment at S-dermatodea_contig8833:3742..6257+ >mRNA_S-dermatodea_contig8833.16961.1 ID=mRNA_S-dermatodea_contig8833.16961.1|Name=mRNA_S-dermatodea_contig8833.16961.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=552bp|location=Sequence derived from alignment at S-dermatodea_contig8833:3742..6257+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCGCCTCCCACAGCGAAAGATGAGGTCAGGCACAGCGCATCTCCAGA
CATCGAGAGCCTGGTGTACGACGATGCGCATGAGATGGCGCCTCCCACAG
CGAAAGATGAGGTCAGGCACAGCGCATCTCCAGACATCGAGAGCCTGGTG
TACGACGATGCGCATGAGAAACGCATGCCCGAGCTACGGCAGCTTCTCGA
CGAGATCCTTCCGCTGCAGAAGTGGAAGGAAATCGAGAGCCGCTTCGTGG
CGTTCCGCAAGCGGGCCAAGTTCGTGCCCAAGAAGAACGTGATGTACCAC
CTCTACAAGGCCCAGGAGAAACGCATGCCCGAGCTACGGCAGCTTCTCGA
CGAGATCCTTCCGCTGCAGAAGTGGAAGGAAATCGAGAGCCGCTTCGTGG
CGTTCCGCAAGCGGGCCAAGTTCGTGCCCAAGAAGAACGTGATGTACCAC
CTCTACAAGGCCCAGGAGGTGCGAAACCCCGCGCTGGAGAAGGCTCTCGT
CAGCAAGCAGGTGCGAAACCCCGCGCTGGAGAAGGCTCTCGTCAGCAAGC
AG back to top
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