mRNA_S-dermatodea_contig8830.16958.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8830.16958.1
Unique NamemRNA_S-dermatodea_contig8830.16958.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig8830.16958.1 vs. uniprot
Match: A0A6H5KPE6_9PHAE (Molybdenum cofactor sulfurase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPE6_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 1.410e-11
Identity = 33/45 (73.33%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:    1 DHRNRALRLKQAPDMCKIRPFVDLQARTLTVSAPGMPDLVLSLDW 135
            D R+RALRLKQ PDMC+IRPFVDL + TLTV+AP MPDLVL L +
Sbjct:  989 DRRDRALRLKQVPDMCQIRPFVDLASGTLTVTAPRMPDLVLPLGY 1033
[Close]
BLAST of mRNA_S-dermatodea_contig8830.16958.1 vs. uniprot
Match: D7G4D6_ECTSI (Molybdenum cofactor sulfurase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4D6_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 2.620e-11
Identity = 33/45 (73.33%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:    1 DHRNRALRLKQAPDMCKIRPFVDLQARTLTVSAPGMPDLVLSLDW 135
            D R+RALRLKQ PDMC+IRPFVDL + TLTV+AP MPDLVL L +
Sbjct:  837 DGRDRALRLKQVPDMCQIRPFVDLASGTLTVTAPRMPDLVLPLGY 881
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8830.16958.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KPE6_9PHAE1.410e-1173.33Molybdenum cofactor sulfurase n=1 Tax=Ectocarpus s... [more]
D7G4D6_ECTSI2.620e-1173.33Molybdenum cofactor sulfurase n=1 Tax=Ectocarpus s... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8830contigS-dermatodea_contig8830:958..1665 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.2
Seed ortholog evalue2.2e-09
Seed eggNOG ortholog2880.D7G4D6
Preferred nameABA3
KEGG koko:K15631
KEGG ReactionR11583
KEGG Pathwayko00790,map00790
GOsGO:0003674,GO:0003824,GO:0006066,GO:0006082,GO:0006464,GO:0006605,GO:0006629,GO:0006714,GO:0006720,GO:0006721,GO:0006732,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006886,GO:0006950,GO:0006952,GO:0006970,GO:0007154,GO:0007165,GO:0008104,GO:0008150,GO:0008152,GO:0008265,GO:0008299,GO:0008610,GO:0009000,GO:0009058,GO:0009266,GO:0009408,GO:0009409,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009651,GO:0009687,GO:0009688,GO:0009719,GO:0009725,GO:0009733,GO:0009734,GO:0009743,GO:0009755,GO:0009756,GO:0009987,GO:0010033,GO:0010118,GO:0010182,GO:0015031,GO:0015833,GO:0016053,GO:0016106,GO:0016114,GO:0016740,GO:0016782,GO:0016783,GO:0016829,GO:0016846,GO:0017038,GO:0018315,GO:0019538,GO:0019637,GO:0019752,GO:0023052,GO:0032787,GO:0032870,GO:0033036,GO:0033365,GO:0034613,GO:0036211,GO:0042040,GO:0042221,GO:0042742,GO:0042886,GO:0043170,GO:0043207,GO:0043288,GO:0043289,GO:0043412,GO:0043436,GO:0043545,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044281,GO:0044283,GO:0045036,GO:0045037,GO:0045184,GO:0046165,GO:0046394,GO:0046483,GO:0046907,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051186,GO:0051189,GO:0051234,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0051716,GO:0055085,GO:0065002,GO:0065007,GO:0070727,GO:0070887,GO:0071310,GO:0071322,GO:0071365,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071806,GO:0072330,GO:0072594,GO:0072596,GO:0072598,GO:0098542,GO:1901360,GO:1901564,GO:1901576,GO:1901615,GO:1901617,GO:1901700,GO:1901701,GO:1902644,GO:1902645
EggNOG free text desc.molybdenum cofactor sulfurtransferase activity
EggNOG OGsCOG0520@1,KOG2142@2759
EC2.8.1.9
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size258
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925369.1433158-CDS-S-dermatodea_contig8830:957..9901622925369.1433158-CDS-S-dermatodea_contig8830:957..990Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8830 958..990 +
1694079886.6000578-CDS-S-dermatodea_contig8830:957..9901694079886.6000578-CDS-S-dermatodea_contig8830:957..990Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8830 958..990 +
1622925369.157207-CDS-S-dermatodea_contig8830:1440..16651622925369.157207-CDS-S-dermatodea_contig8830:1440..1665Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8830 1441..1665 +
1694079886.616967-CDS-S-dermatodea_contig8830:1440..16651694079886.616967-CDS-S-dermatodea_contig8830:1440..1665Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8830 1441..1665 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8830.16958.1prot_S-dermatodea_contig8830.16958.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8830 958..1665 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8830.16958.1

>prot_S-dermatodea_contig8830.16958.1 ID=prot_S-dermatodea_contig8830.16958.1|Name=mRNA_S-dermatodea_contig8830.16958.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=86bp
DHRNRALRLKQAPDMCKIRPFVDLQARTLTVSAPGMPDLVLSLDWDKSDA
RASSLTTSDESAAEPAVDSSWYSSRCKGSSSGGDGD
back to top

mRNA from alignment at S-dermatodea_contig8830:958..1665+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8830.16958.1 ID=mRNA_S-dermatodea_contig8830.16958.1|Name=mRNA_S-dermatodea_contig8830.16958.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=708bp|location=Sequence derived from alignment at S-dermatodea_contig8830:958..1665+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GACCACCGCAACCGAGCCCTACGCCTCAAGCAGGTGCGAGGGTGCCGTGT
CGTGCTGAAATTGCCCGTTGTTTTTTGTTGGCGGAAAAGTGAGGGCGTTA
TTGTATTGTGTATATTTTCGCCGTGCACAAGTATTGAATATTGTATACGT
TTTACCCGCAGCAACTCCAGAAAGTAGCGGGAAACCGTTCGAGGGAAGTC
AGGAGTATTGAAGGTACGGCTTAAGAACACGAGGAAGAGGCGCCGCTGAA
CACGCGTGAACCTTGTGTGCTTGAATGGAACAGATACGATGCCAGCCTTG
TCCTGGTTTTAGCCTTGACCGGGTTTTCTTTTGCAGCACCACCTGGCGCT
TAAAAATTAAAAACACGGTGGGTTCCCGCCATATCCCAAAACCAAGGTAT
CCTAAGCTCGATTTCTTTACGTGTCGACAACGGCGCACGCGCACGCGCAC
GCGCACGCGCACGCGCACGCGTCGTCTCTTCAGGCCCCCGACATGTGCAA
GATACGTCCATTCGTGGATCTCCAAGCACGGACTCTCACCGTCTCCGCCC
CAGGTATGCCCGACCTGGTGCTATCGCTGGATTGGGATAAGTCCGACGCC
CGGGCCTCGTCGCTGACGACGTCAGACGAGTCGGCAGCAGAGCCGGCGGT
TGACAGCTCCTGGTATTCTAGTCGTTGCAAAGGCAGCAGCAGCGGCGGTG
ATGGCGAT
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig8830:958..1665+

>mRNA_S-dermatodea_contig8830.16958.1 ID=mRNA_S-dermatodea_contig8830.16958.1|Name=mRNA_S-dermatodea_contig8830.16958.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=516bp|location=Sequence derived from alignment at S-dermatodea_contig8830:958..1665+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GACCACCGCAACCGAGCCCTACGCCTCAAGCAGGACCACCGCAACCGAGC
CCTACGCCTCAAGCAGGCCCCCGACATGTGCAAGATACGTCCATTCGTGG
ATCTCCAAGCACGGACTCTCACCGTCTCCGCCCCAGGTATGCCCGACCTG
GTGCTATCGCTGGATTGGGATAAGTCCGACGCCCGGGCCTCGTCGCTGAC
GACGTCAGACGAGTCGGCAGCAGAGCCGGCGGTTGACAGCTCCTGGTATT
CTAGTCGTTGCAAAGGCAGCAGCAGCGGCGGTGATGGCGATGCCCCCGAC
ATGTGCAAGATACGTCCATTCGTGGATCTCCAAGCACGGACTCTCACCGT
CTCCGCCCCAGGTATGCCCGACCTGGTGCTATCGCTGGATTGGGATAAGT
CCGACGCCCGGGCCTCGTCGCTGACGACGTCAGACGAGTCGGCAGCAGAG
CCGGCGGTTGACAGCTCCTGGTATTCTAGTCGTTGCAAAGGCAGCAGCAG
CGGCGGTGATGGCGAT
back to top