mRNA_S-dermatodea_contig881.16948.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig881.16948.1
Unique NamemRNA_S-dermatodea_contig881.16948.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig881.16948.1 vs. uniprot
Match: D8LBP8_ECTSI (Nudix (Nucleoside diphosphate linked moiety X)-type motif 6 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBP8_ECTSI)

HSP 1 Score: 461 bits (1187), Expect = 7.930e-156
Identity = 219/266 (82.33%), Postives = 244/266 (91.73%), Query Frame = 2 
Query:  263 SSTTTSNVGLPVPLPFEETKFNSAMVDVSKIQVEDTADFALKLFSTVDLLRKSRKAAMWLKVPVDFCHYISVAAHYGFQFHHTQPKYVMMCLWMPEDVPNKVPPYGTHHLGVAGCVVNDNREVLLVKEKHKQAMWKFPGGLADPGEGIGEAAVREVFEETGVEADFRSVLSMRHQHDVQFGNSDLYFVCRLM-PKEGGALDITKCSHEIDDACWMPLDQFKKQTRHSMLAVVADMLEDPEAQELTRSLHNSAIPDRAPYFLYHRHT 1057
            SSTT SNVGLPVPLPFE++KFNSA VD++KIQVEDTADFALKLF+TVD LRK  KAA+WLKVP DFCH+IS+A+HYGFQ HHTQPKY+MM LW+PEDVP+KVPPYGTHH+GVAGCV+N   EVLLVK+KHK AMWKFPGGLAD GEGIGEAAVREV+EETGV  +FRSVLSMRHQH++QFGNSDLYF+CRLM P++ GALDI KC+HEI DACWMPLDQFKKQTRHSMLAVVADMLE PE +ELTRSLH SAIPDRAPYFLYHRH+
Sbjct:   70 SSTTISNVGLPVPLPFEQSKFNSATVDIAKIQVEDTADFALKLFATVDKLRKDGKAALWLKVPTDFCHFISIASHYGFQLHHTQPKYLMMYLWLPEDVPDKVPPYGTHHVGVAGCVMNSQDEVLLVKDKHKGAMWKFPGGLADVGEGIGEAAVREVWEETGVMTEFRSVLSMRHQHEMQFGNSDLYFICRLMLPEDTGALDINKCNHEIADACWMPLDQFKKQTRHSMLAVVADMLEKPEEKELTRSLHESAIPDRAPYFLYHRHS 335
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BLAST of mRNA_S-dermatodea_contig881.16948.1 vs. uniprot
Match: A0A836C878_9STRA (Nucleoside diphosphate linked moiety X-type motif 6 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C878_9STRA)

HSP 1 Score: 260 bits (665), Expect = 8.520e-78
Identity = 128/263 (48.67%), Postives = 177/263 (67.30%), Query Frame = 2 
Query:  287 GLPVPLPFEETKFNSAMVDVSKIQVEDTADFALKLFSTVDLLRKSRKAAMWLKVPVDFCHYISVAAHY-GFQFHHTQPKYVMMCLWMPEDVPNKVPPYGTHHLGVAGCVVNDNREVLLVKEKHKQAMWKFPGGLADPGEGIGEAAVREVFEETGVEADFRSVLSMRHQHDVQFGNSDLYFVCRLMPKEGGAL-------DITKCSHEIDDACWMPLDQFKKQTRHSMLAVVADML-EDPEAQELTRSLHNSAIPDRAPYFLYH 1048
            GLP   P++E ++NSA ++  K++ +DTADFA KL +TV  L++  K+A+WLKVP+D+ HY+ VAA   GF+ HH  P  V+M  W+ + VP+KVPP+ THH+GVAGCV++    VL+VKE+H +A+WKFPGGLA+ GE +G AA REV EETGV + F  +L+ R QH +QFGNSDLYF+CR+  + G          ++  C+HEI +A WMPL++F  Q  H M+ VVA ML E P+  EL      S    R PY +Y+
Sbjct:   60 GLPDLFPYKEGQYNSASINAGKVRAQDTADFAAKLSATVAHLQREEKSAVWLKVPMDYAHYLPVAARAAGFRPHHALPDAVLMVRWLLDGVPDKVPPFATHHVGVAGCVLDARGRVLVVKERHPRALWKFPGGLAEAGEDLGAAAAREVEEETGVRSAFAGLLAFRQQHAMQFGNSDLYFICRMTRRTGEXXXXXXXXQELRPCAHEIAEARWMPLEEFAAQNTHPMMGVVAKMLMEGPQNHELKEETQESIFGSRPPYKMYY 322
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BLAST of mRNA_S-dermatodea_contig881.16948.1 vs. uniprot
Match: A0A4D9D5W2_9STRA (Nudix hydrolase domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D5W2_9STRA)

HSP 1 Score: 204 bits (518), Expect = 6.260e-57
Identity = 112/264 (42.42%), Postives = 149/264 (56.44%), Query Frame = 2 
Query:  290 LPVPLPFEETKFNSAMVDVSKIQVEDTADFALKLFSTVDLLRKSRKAAMWLKVPVDFCHYISVAAHYGFQFHHTQPKYVMMCLWMPEDVPNKVPPYGTHHLGVAGCVVNDNREVLLVKEKHKQAM-WKFPGGLADPGEGIGEAAVREVFEETGVEADFRSVLSMRHQHDVQFGNSDLYFVCRLMPKEGGALDITKCSHEIDDACWMPLDQFKKQTRHSMLAVVADML------EDPEAQELTRSLHNSAIPDRAPYFLYHRHTP 1060
            L  PL      FN+ M+D   ++V DT+DF  +L  TV  LR+  +++MW++V     H + V   +GF+ HH +P+ V+M LW+     NKVPPY TH +GVAG   N   EVLLVKE  K    WK PGG  +PGE  G AAVREV EETGV + F  +L++RHQH   FG  D+Y V RL        ++  CS EI DA W+PL QF+ +  H +L  VA++       E P   ++    H S +P R PY LYH   P
Sbjct:   24 LGEPLEVTPMPFNAVMLDTDNMRVTDTSDFTTRLLVTVQQLRREGRSSMWVRVHALNGHLLGVLGTFGFKCHHCEPESVIMNLWLQPGKENKVPPYATHLVGVAGFCQNKKGEVLLVKEGSKNLSGWKLPGGYINPGEEFGAAAVREVEEETGVRSSFEGLLALRHQHQQSFGVDDIYVVTRLQALTD---ELRLCSSEIQDARWVPLKQFQDEASHPILRTVAELTRGWGQGEGPVRGDIVEREHPSILPGRPPYKLYHAPLP 284
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BLAST of mRNA_S-dermatodea_contig881.16948.1 vs. uniprot
Match: K8Z7W9_NANGC (Nucleoside diphosphate-linked moiety x motif 6 n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8Z7W9_NANGC)

HSP 1 Score: 202 bits (513), Expect = 4.780e-55
Identity = 111/260 (42.69%), Postives = 147/260 (56.54%), Query Frame = 2 
Query:  290 LPVPLPFEETKFNSAMVDVSKIQVEDTADFALKLFSTVDLLRKSRKAAMWLKVPVDFCHYISVAAHYGFQFHHTQPKYVMMCLWMPEDVPNKVPPYGTHHLGVAGCVVNDNREVLLVKEKHKQAM-WKFPGGLADPGEGIGEAAVREVFEETGVEADFRSVLSMRHQHDVQFGNSDLYFVCRLMPKEGGALDITKCSHEIDDACWMPLDQFKKQTRHSMLAVVADML------EDPEAQELTRSLHNSAIPDRAPYFLYH 1048
            L  PL      FN+ M+D   ++V DT+DF  +L  TV  LR+  +++MW++V     H + V   +GF+ HH +P+ V+M LW+     NKVPPY TH +GVAG   N   EVLLVKE  K    WK PGG  +PGE  G AAVREV EETGV + F  +L++RHQH   FG  D+Y V RL        ++  CS EI DA W+PL QF+ +  H +L  VA++       E P    +    H S +P R PY LYH
Sbjct:  120 LGEPLEVTPMPFNAVMLDTDNMRVTDTSDFTTRLLVTVQQLRREGRSSMWVRVHALNGHLLGVLGTFGFKCHHCEPESVIMNLWLQPGKENKVPPYATHLVGVAGFCQNKKGEVLLVKEGSKNLSGWKLPGGYINPGEEFGAAAVREVEEETGVRSSFEGLLALRHQHQQSFGVDDIYVVTRLQALTD---ELRLCSSEIQDARWVPLKQFQDEASHPILRTVAELTRGWGEGEGPVRGVIVEREHPSILPGRPPYKLYH 376
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BLAST of mRNA_S-dermatodea_contig881.16948.1 vs. uniprot
Match: UPI00142569A1 (nucleoside diphosphate-linked moiety X motif 6-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI00142569A1)

HSP 1 Score: 191 bits (486), Expect = 1.710e-52
Identity = 91/201 (45.27%), Postives = 134/201 (66.67%), Query Frame = 2 
Query:  320 KFNSAMVDVSKIQVEDTADFALKLFSTVDLLRKSRKAAMWLKVPVDFCHYISVAAHYGFQFHHTQPKYVMMCLWMPEDVPNKVPPYGTHHLGVAGCVVNDNREVLLVKEK-HKQAMWKFPGGLADPGEGIGEAAVREVFEETGVEADFRSVLSMRHQHDVQFGNSDLYFVCRLMPKEGGALDITKCSHEIDDACWMPLDQF 919
            ++N  ++++ + + +    F  +L  +++    S    +WLK+ ++   +I+VAA +GF FHH Q  YVMM  W+P D PN++P Y TH++GVAG VVN+N +VL+VKE+ +K+A WK PGG+ADPGE +G  A REVFEETG+EA+F S+L+ R QH  +FG SDLYFVC +        +I  C HEI D  WM +D++
Sbjct:   10 QYNGIIINIKEHKCDSEKIFNDRLKRSLEEWNTSGIRGVWLKIAIECAAFIAVAAKHGFVFHHAQTDYVMMIKWLPTDEPNQLPGYTTHYVGVAGFVVNENNQVLVVKERFYKKANWKLPGGMADPGEDLGVTAKREVFEETGIEAEFISLLAFRQQHGFRFGQSDLYFVCEMKALNS---EIASCQHEISDCMWMNVDEY 207
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BLAST of mRNA_S-dermatodea_contig881.16948.1 vs. uniprot
Match: A0A835YXX9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXX9_9STRA)

HSP 1 Score: 193 bits (491), Expect = 2.300e-52
Identity = 122/333 (36.64%), Postives = 174/333 (52.25%), Query Frame = 2 
Query:  137 GASLSRRRGNGSDVNSSISSSNSNAGSLSC-RQHGISGT-----AHRCSSTTTSNVGLPVPLPFEETKFNSAMVDVSKIQVEDTADFALKLFSTVDLLRKSRKAAMWLKVPVDFCHYISVAAHYGFQFHHTQPKYVMMCLWMPEDVPNKVPPYGTHHLGVAGCVVNDNREVLLVKEK--------HKQAMWKFPGGLADPGEGIGEAAVREVFEET-----GVEADFRSVLSMRHQHDVQFGNSD-LYFVCRLMPKEGGALDITKCSHEIDD----ACWMPLDQFKKQTRHS--MLAVVADMLED-PEAQELTRSLHNSAIPDRAPYFL-YHR 1051
            G S++RR        +   +S + AG  +C R HG         A   SS+  +  G+P P P+EE ++NSA V+  K+  EDTADFA  LF+T+  LR  +K A+WL+VP+DF HY+ +A HYGF+FHHT+   VMM LW+  DV N++PP+ THH+ V+  V N +  VL+V+             + + FPGGLA+ GE + +AA R V         G    FR VL++R  HD   G +  L+F+C L                       A W+P+   ++Q      + A VA +LE   E  E+   +H SA+P R PY L YHR
Sbjct:    9 GLSVARRASGSPGAGACAFTSQARAGGRACIRAHGSCSAVAPWGARLMSSSIPTMTGMPDPFPYEEGRYNSATVNAGKVYAEDTADFATSLFATITHLRHEKKNALWLRVPMDFAHYVPIAGHYGFKFHHTEENAVMMVLWLRGDVANRIPPFATHHVDVSAVVTNADGHVLVVRRPPXXXXXXXXXXSSFTFPGGLAERGEDLADAAARAVAAAAPRALGGGGVAFRGVLALRQAHDAHAGGAGALHFLCHLTAAXXXXXXXXXXXXXXXXXXXXAQWVPVSALREQGEAGDVVAAAVAQLLEGGAERSEMAAEVHASAVPGRPPYTLFYHR 341
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BLAST of mRNA_S-dermatodea_contig881.16948.1 vs. uniprot
Match: A0A1S3I2N1_LINUN (nudix hydrolase 8 n=2 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3I2N1_LINUN)

HSP 1 Score: 189 bits (481), Expect = 1.030e-51
Identity = 89/210 (42.38%), Postives = 129/210 (61.43%), Query Frame = 2 
Query:  293 PVPLPFEETKFNSAMVDVSKIQVEDTADFALKLFSTVDLLRKSRKAAMWLKVPVDFCHYISVAAHYGFQFHHTQPKYVMMCLWMPEDVPNKVPPYGTHHLGVAGCVVNDNREVLLVKEK-HKQAMWKFPGGLADPGEGIGEAAVREVFEETGVEADFRSVLSMRHQHDVQFGNSDLYFVCRLMPKEGGALDITKCSHEIDDACWMPLDQF 919
            P  LP    +++  ++D++K   E   DF  KL +++    K     +W+K+P+D    + + A + F ++H +P YVMM  W+P+D  N +PPY   +LG AG VVN  +++L+++EK H Q MWK PGGLAD GE IGEAA REVFEETGV   F+S++  RH H  + G  D YF+C + P    + +ITKC  EI   CWM LD++
Sbjct:    6 PNTLPAMRDRYDGVIIDINKQTYETEEDFEKKLVNSLCSWSKEAVRGVWVKIPLDMATLVPICAKHKFVYNHAKPSYVMMTRWLPQDEENCIPPYANQYLGCAGFVVNSEKKLLVIQEKYHVQKMWKLPGGLADTGEDIGEAAEREVFEETGVRCKFQSIICFRHMHKFRHGLDDFYFICLMEPM---SKEITKCDREISACCWMDLDEY 212
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BLAST of mRNA_S-dermatodea_contig881.16948.1 vs. uniprot
Match: A0A7S2MDL7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MDL7_9STRA)

HSP 1 Score: 182 bits (462), Expect = 1.840e-49
Identity = 100/237 (42.19%), Postives = 143/237 (60.34%), Query Frame = 2 
Query:  365 DTADFALKLFSTVDLLRKSRKAAMWLKVPVDFCHYISVAAHYGFQFHHTQPKYVMMCLWMPEDVPNKVPPYGTHHLGVAGCVV----NDNRE---VLLVKEKHKQ-AMWKFPGGLADPGEGIGEAAVREVFEETGVEADFRSVLSMRHQHDVQFGNSDLYFVCRLMPKEGGALDITKCSHEIDDACWMPLDQFKKQTRHSMLA-VVADMLEDPEAQELTRSLHNSAIPDRAPYFLYH 1048
            DT+DF + L S++     + K A WL VP+DF HYISVAA  GF+FHH +     M LWM  + P+++PP+ TH +GV G VV    +DN E   VL+++E  +    +K PGGL D  E  G+AAVREV EETGVEA+F  +L+MRHQH +QFG SD+Y +  L      ++D+   ++E++DA WM L +F++ + H M+   +     +  A  L      S +P R PY LY+
Sbjct:    1 DTSDFGMSLVSSLKAFNSAGKLATWLVVPLDFAHYISVAALSGFRFHHAEGDTATMVLWMRPNEPSRIPPFATHQVGVGGLVVRGGPDDNPEDPHVLVIREAGRNYTNFKLPGGLCDVAEDFGDAAVREVREETGVEAEFSRILTMRHQHGMQFGRSDIYCIALL---RATSVDVAIDTNELEDARWMKLSEFRENSPHEMVEHAIQAATGEGGAVGLQEKELKSVVPGRVPYKLYY 234
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BLAST of mRNA_S-dermatodea_contig881.16948.1 vs. uniprot
Match: C3ZV31_BRAFL (Nudix hydrolase domain-containing protein (Fragment) n=3 Tax=Branchiostoma TaxID=7737 RepID=C3ZV31_BRAFL)

HSP 1 Score: 177 bits (448), Expect = 3.630e-48
Identity = 81/165 (49.09%), Postives = 110/165 (66.67%), Query Frame = 2 
Query:  434 MWLKVPVDFCHYISVAAHYGFQFHHTQPKYVMMCLWMPEDVPNKVPPYGTHHLGVAGCVVNDNREVLLVKEKHK---QAMWKFPGGLADPGEGIGEAAVREVFEETGVEADFRSVLSMRHQHDVQFGNSDLYFVCRLMPKEGGALDITKCSHEIDDACWMPLDQF 919
            +W+K+ +     + +AA  GF+FHH    YVMM  W+P D PN +P Y  H++GVAG VVND  EVL+++EK+    QA WK PGGLA+PGE + + A REV EETGV+A+F S+L  RHQH+  FG SD+YFVC + PK    +DIT C  E+    WMP +++
Sbjct:   11 VWIKISLKDAEIVPIAAQNGFEFHHAHKDYVMMIRWLPTDEPNMIPGYAAHYVGVAGFVVNDQNEVLVIQEKYTHSMQAHWKLPGGLAEPGEDLADTARREVLEETGVDAEFLSLLCFRHQHNFSFGCSDMYFVCHMKPKN---VDITICEQEVSKCQWMPFEEY 172
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BLAST of mRNA_S-dermatodea_contig881.16948.1 vs. uniprot
Match: A0A6P4YAU5_BRABE (nudix hydrolase 8-like isoform X1 n=3 Tax=Branchiostoma TaxID=7737 RepID=A0A6P4YAU5_BRABE)

HSP 1 Score: 179 bits (454), Expect = 5.960e-48
Identity = 89/203 (43.84%), Postives = 127/203 (62.56%), Query Frame = 2 
Query:  320 KFNSAMVDVSKIQVEDTADFALKLFSTVDLLRKSRKAAMWLKVPVDFCHYISVAAHYGFQFHHTQPKYVMMCLWMPEDVPNKVPPYGTHHLGVAGCVVNDNREVLLVKEKHK---QAMWKFPGGLADPGEGIGEAAVREVFEETGVEADFRSVLSMRHQHDVQFGNSDLYFVCRLMPKEGGALDITKCSHEIDDACWMPLDQF 919
            ++   +V+ +K Q   T +F  KL + +   ++     +W+K+ +     + +AA  GF+FHH Q  YVMM  W+P D PN +P Y  H++GVAG VVND  EVL+++EK+    +A WK PGGLA+PGE + + A REV EETGV+A+F S+L  RHQH+  FG SD+YFVC + PK    LDIT    E+    WMP+ +F
Sbjct:   13 RYGGVVVETTKQQCS-TEEFKNKLEADLTKWQEIGVRGVWIKISLKDADIVPIAAQKGFEFHHAQKDYVMMIKWLPTDEPNMIPGYAAHYVGVAGFVVNDRNEVLVIQEKYTHSVKAHWKLPGGLAEPGEDLADTARREVLEETGVDAEFLSLLCFRHQHNFSFGCSDMYFVCHMKPKN---LDITVGEQEVTKCQWMPISEF 211
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig881.16948.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBP8_ECTSI7.930e-15682.33Nudix (Nucleoside diphosphate linked moiety X)-typ... [more]
A0A836C878_9STRA8.520e-7848.67Nucleoside diphosphate linked moiety X-type motif ... [more]
A0A4D9D5W2_9STRA6.260e-5742.42Nudix hydrolase domain-containing protein n=1 Tax=... [more]
K8Z7W9_NANGC4.780e-5542.69Nucleoside diphosphate-linked moiety x motif 6 n=2... [more]
UPI00142569A11.710e-5245.27nucleoside diphosphate-linked moiety X motif 6-lik... [more]
A0A835YXX9_9STRA2.300e-5236.64Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A1S3I2N1_LINUN1.030e-5142.38nudix hydrolase 8 n=2 Tax=Lingula unguis TaxID=757... [more]
A0A7S2MDL7_9STRA1.840e-4942.19Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
C3ZV31_BRAFL3.630e-4849.09Nudix hydrolase domain-containing protein (Fragmen... [more]
A0A6P4YAU5_BRABE5.960e-4843.84nudix hydrolase 8-like isoform X1 n=3 Tax=Branchio... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig881contigS-dermatodea_contig881:5007..10315 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score466.8
Seed ortholog evalue8.4e-129
Seed eggNOG ortholog2880.D8LBP8
Preferred nameNUDT6
GOsGO:0003674,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0008083,GO:0008150,GO:0009966,GO:0010469,GO:0010646,GO:0023051,GO:0030545,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0048018,GO:0048583,GO:0050789,GO:0050794,GO:0065007,GO:0065009,GO:0098772
EggNOG free text desc.8-hydroxy-dADP phosphatase activity
EggNOG OGsKOG0648@1,KOG0648@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionNUDIX hydrolase domain-like
Ec32 orthologEc-27_003180.1
Exons5
Model size1995
Cds size1023
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925368.0916915-UTR-S-dermatodea_contig881:5006..59351622925368.0916915-UTR-S-dermatodea_contig881:5006..5935Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig881 5007..5935 -
1694079885.8416464-UTR-S-dermatodea_contig881:5006..59351694079885.8416464-UTR-S-dermatodea_contig881:5006..5935Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig881 5007..5935 -
1622925368.162283-UTR-S-dermatodea_contig881:10272..103151622925368.162283-UTR-S-dermatodea_contig881:10272..10315Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig881 10273..10315 -
1694079885.9095259-UTR-S-dermatodea_contig881:10272..103151694079885.9095259-UTR-S-dermatodea_contig881:10272..10315Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig881 10273..10315 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925368.1021628-CDS-S-dermatodea_contig881:5935..60051622925368.1021628-CDS-S-dermatodea_contig881:5935..6005Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig881 5936..6005 -
1694079885.856145-CDS-S-dermatodea_contig881:5935..60051694079885.856145-CDS-S-dermatodea_contig881:5935..6005Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig881 5936..6005 -
1622925368.1119595-CDS-S-dermatodea_contig881:6722..71161622925368.1119595-CDS-S-dermatodea_contig881:6722..7116Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig881 6723..7116 -
1694079885.866959-CDS-S-dermatodea_contig881:6722..71161694079885.866959-CDS-S-dermatodea_contig881:6722..7116Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig881 6723..7116 -
1622925368.1227324-CDS-S-dermatodea_contig881:8416..85871622925368.1227324-CDS-S-dermatodea_contig881:8416..8587Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig881 8417..8587 -
1694079885.8779469-CDS-S-dermatodea_contig881:8416..85871694079885.8779469-CDS-S-dermatodea_contig881:8416..8587Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig881 8417..8587 -
1622925368.1332705-CDS-S-dermatodea_contig881:9029..91391622925368.1332705-CDS-S-dermatodea_contig881:9029..9139Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig881 9030..9139 -
1694079885.8903537-CDS-S-dermatodea_contig881:9029..91391694079885.8903537-CDS-S-dermatodea_contig881:9029..9139Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig881 9030..9139 -
1622925368.1489944-CDS-S-dermatodea_contig881:9994..102721622925368.1489944-CDS-S-dermatodea_contig881:9994..10272Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig881 9995..10272 -
1694079885.8998382-CDS-S-dermatodea_contig881:9994..102721694079885.8998382-CDS-S-dermatodea_contig881:9994..10272Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig881 9995..10272 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig881.16948.1prot_S-dermatodea_contig881.16948.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig881 5936..10272 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig881.16948.1

>prot_S-dermatodea_contig881.16948.1 ID=prot_S-dermatodea_contig881.16948.1|Name=mRNA_S-dermatodea_contig881.16948.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=341bp
MALRLGQAARALGNLGQRTSLSNATAATGGVGASLSRRRGNGSDVNSSIS
SSNSNAGSLSCRQHGISGTAHRCSSTTTSNVGLPVPLPFEETKFNSAMVD
VSKIQVEDTADFALKLFSTVDLLRKSRKAAMWLKVPVDFCHYISVAAHYG
FQFHHTQPKYVMMCLWMPEDVPNKVPPYGTHHLGVAGCVVNDNREVLLVK
EKHKQAMWKFPGGLADPGEGIGEAAVREVFEETGVEADFRSVLSMRHQHD
VQFGNSDLYFVCRLMPKEGGALDITKCSHEIDDACWMPLDQFKKQTRHSM
LAVVADMLEDPEAQELTRSLHNSAIPDRAPYFLYHRHTPP*
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mRNA from alignment at S-dermatodea_contig881:5007..10315-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig881.16948.1 ID=mRNA_S-dermatodea_contig881.16948.1|Name=mRNA_S-dermatodea_contig881.16948.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5309bp|location=Sequence derived from alignment at S-dermatodea_contig881:5007..10315- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGCACACCCAACAAACACAACACGCACGAAGCTACATACGAAATGGCCT
TGCGACTGGGTCAAGCCGCCAGGGCGCTGGGCAACCTTGGCCAGCGCACC
AGCCTGAGCAACGCAACTGCGGCGACGGGCGGGGTCGGTGCTTCATTGTC
ACGTCGAAGAGGTAACGGCAGCGACGTCAACAGCAGCATCAGCAGCAGCA
ACAGCAACGCGGGATCCCTGTCATGTCGGCAACATGGCATCTCTGGCACG
GCCCATCGCTGCTCCTCTACCACCACATCGAACGTTGGACTGCCGGTCCC
TCTCCCCTTCGAAGAGACCAAGTGAGGCCTGGGGGCGGGGTGTCGACGGT
GCCGGGCGGGGCCCGGCCGGCGGCATGTTGCAGCATTGGAACAAGCTTGT
TTTTGCCGGCATATTGTCAGTGCGTGTGCAGTACACGCTGTTGGGTGCGT
CTGTGTCTTCTCTTTTACAAGTACTTGTACTGTGGCAGTTGCACGGCACC
ATCCGTTGCGTACAGGGAGACCGCTCTTGGTTCAACCTCGGTGTCTGTTT
CGGCTTCGAGTCGAGAACGTTACTCGCGTGTGCACCATGCTTTAGCTGCG
AGCGGTAGAGTTAGCAGTACACCCGGCAGCAGTGAAGGAAGTCAAGCCTT
CACATGTGTGCAATGCACAAGTATCTTTGTTCCTATTTTCTATTTCCCCC
CCTCCACCCCCCGCCCTCTGGCGGAAGTCGAGTGCAGGAAAGTGTAAACA
CGAACGCAACGTCACACGGCCGAAGTGCGGCGTCACTACCGCAACCATGG
GATTTACGTGTAATTTCTTGTTGTTCTTGGTCGGTCAGTGCGCGGCCAAT
CCGAGAGTACCAAAATACTGGAGAACGCAAGTCCAGCAGACCTTTGGCCG
CACGAGGACACAGCTGTATTATCATACACAGTACAAGTATCAAGTACAAT
TACTTGTGTATCATGTTGTTTTTTTTTAGAAGCCAAACTCATCTCGCAGC
AAACCAGCGCCTCCGTCATAATGTACCTGACACGTTTCATCATCTCCCTT
ATACTTGAACACAATATGCGTACTGTATGTGCAAGAGTTGTACGGTATCA
ACGCAGCAAGTACATGTACAACAAATGTAGTATATAGCAATGCCGTTATT
TCGTTCGAAATCGTAATCGTCCGCAGGTTCAACAGTGCAATGGTGGACGT
CTCGAAGATCCAGGTCGAGGATACCGCTGACTTCGCGCTCAAGCTTTTCT
CCACAGTCGACCTCCTGCGCAAGAGTCGCAAAGCGGGTGAGAGGACCTCC
CTATTTTGTCTCATCGCACGCACAGATATCATGTCATACACATGATACTG
TAGTTACCCGGCAACAAAGGTTGAAAGGTAACCTCTGCTACATGCTCTGT
CCTTGCTCCCCGGCGTTTACAGCAGTATAGGTTTTGAGGGAGAATTGTAT
TGCGTTGTCCACGACAGGATTTCATCAACGTCGCAATCGTGTGGCCTGGA
CCAGTTCGCAGATTGCTCTGAGAGGCGAAGTATCCTCCAGGGTTCGCACA
TCGATGGCTACACACCTCCTGTTGCGTTTAAGTTCGAGGTTGGAGGACAA
CCCACGACTCCAGGAACCACCTCCATGCTGCGGCTGGAACCCTCGCTTGC
CTCGTCCCTAAGTCCCCCCATCGTCCGTCCCATCCCCTCCTGTCCCCTCC
TCTGCCCTTCCTCTTTTTACCACGTCAGCGATGTGGCTCAAGGTGCCGGT
GGACTTCTGCCACTACATCTCTGTGGCGGCCCACTATGGCTTTCAGTTCC
ACCATACCCAGCCCAAGTACGTAATGATGTGCCTGTGGATGCCGGAGGAC
GTCCCCAACAAGGTCCCCCCATATGGCACGCACCACCTCGGTGTAGCAGG
TGAGCCGAAATGGGCTTGGAGGTCATGTTGCCTGAGTATGTAGCGCTGCT
GCTGGTACTGAGATGTTGAAGGGGGTTGTCCTCGAGCGATTATGTCCATC
GTGCGCTCGTGATGTAACTGTGCACGGGGGTTGTGTCCTCTGCCTGCAGC
TCCGGATTTTTGCCCCCCTCCCACTCGGTGGAAGAGCCTTGTCTCTCCCC
AAAGGGGTGAAACGCAAAACGTCCTTCAAGACACCTGTTGAAAATGGAAT
TGTTGGAAAGCCCTAGAGCAACCTTCGACTTATGATTGGTACTCCGCCAG
GAGTATTCATGAGCATGTTCTGGTCCGAGTGGTCACACATCTACCGTCGT
GTATATTGTGTGCGTGGGGCGCTTTTGCGTTCGCACTGTGATCAAAGTTC
CTTTGCGGTGCTTGGAGTATAATCACGCCTACTGAATGTGTAACATTTGG
TTACCCGGTATCTTCAATCACCTCATGCCATATCGGTTGGCGTCGCAAAC
GCAGAGATGGTGGCTAGCAGTTGGTATAATATCACCCTTGTGAAACGCAC
CCTGGCCGGCGAAAACTCGGCATATCGCTCCGTCCTGGCATTGTTGGGGC
GCTTGGTCTATGTCCGTTTGGTTACGACATGCGTTTAACATGAGTACACC
CTACTCGGGTGTTATACGTTCGGCGTGTCGAAACCCCACAGTGGGTCACA
GCAGCGAACGCCCCCACCCTGATGTGCCTCTTGATGCGCGGATGCGACGG
CGGTAGATGTGCGCTCCAAGAGTTACAAGTTCGCAAAATCCTGCCGGGCG
TTGCGTTGCGGCAGGAACTGCGTCGTTGTGGCAGAAGGCGACGCCTCTGC
GCGCCATCTCAGTTGTACGCATGTCTCCCTTTTCATGCAGCAGCGGCGAT
CACCTCGTGATGTTCCATGTTTGTTCCGCTTCGCGAGCTGTCCCTGTGAC
GCATCGAGACGGCGTGCAGCGCAAGCACGGCTTTCGTGTACATCCAAGCA
CGCACATTTTCTGCGGGTCAACCTCTGAAGCACGCGTCGGTGTCCATTCC
GAGAACGACTTGCGTTCAGCACCGGTTTTGTCGAAAGCGGTCGGATAGTC
CAGCCATCCACCAAACAGCCACTTACCGCCGCGAGAGAAAGCGCGGAGGG
TGACCCGCCGCAAGTTCCGTGGCCGGGATGCCGCCGTGTTCTTTTGCGCG
CCAAGTCACCAATTCGTTTCTTTCCCAAGCATCTCGTGCTGTGTGCTCGG
CCCTTGCCAACCTTCCTCATGTGTTTTGGCATTTCCCCCGTCGCCCAAGG
TTGTGTGGTGAACGACAACCGCGAGGTACTGCTGGTTAAGGAAAAGCACA
AGCAGGCTATGTGGAAGTTTCCGGGAGGGCTGGCGGACCCCGGGGAAGGG
ATCGGTGAGGCCGCGGTCCGGGAGGTGTTCGAGGAAACGGGCGTCGAGGC
AGATTTCCGGTCGGTGCTGAGCATGCGACACCAGCACGACGTCCAGTTCG
GGAACAGCGACCTGTACTTCGTCTGCCGGCTGATGCCGAAGGAAGGAGGG
GCGCTGGACATCACCAAGTGCAGCCACGAGATCGACGACGCGTGCTGGAT
GCCGCTGGATCAGTTCAAGAAGCAGACCCGGCACTCGATGCTGGCGGTTG
TGGCGGACATGCTCGAGGATCCCGAGGCGCAGGAGCTGACGAGGTGAGCG
AGAACCGTAGAGATTTCTGGTTGTAGTGATGGCACGAAAAATGTCGAGAA
CACGACGGTTGCGATGCGCACTTCTTCGTGCGTTTTTTTTTCTGGGTGTT
TCGTGCCGGTGGGAGAGGAGGAGCGAGGGGAGGGTGTTGGAACACTTTTA
GTGACATGATATCGCAGTGATCGGTGGAGGTGGAGTTGTTGGTGGTCGGC
GGATTGCGGTGGAGACACAGCGAATGGGATCCCCTTCGAGCTGAGCCGTG
GTATTTTTTTCGACTACGAAACGTTGGAAGAGGGAGCGGACGGAACGGGG
GGGGGGGGGGGGGGGGGGGGAGAGAGGCTTCGGGGGGACTAACGGAGCAG
ACCGCTTCGTGGCGGGGGGGGGGGGGACCCTCCGCAGGGGGGGGGGGTGG
CCACCACCCCCCTACNNNNNNNNNNGGGGGGTGGCGCGGGGGGGGGGTGG
GTTTGTGGTTTTTTGAGCGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGTGGAATGGAGTCTTCGAGAGCACTAGCG
AAGACTTACGCTTGCTGTCGAGTGTGGTGGACATCACCAGTCGAGTGTGG
TGGACATCACCATACTCTGGCAAGCGATCAACGCATTGTTTATCTTCTAC
GGCTCATCTCTACGACTCATGCCCCCGTTGTTTTTTTTCCCACCCGCGAA
CCTACCTCAGGAGTTTGCACAATTCGGCGATTCCCGACCGGGCGCCCTAC
TTCCTCTACCACCGCCACACTCCGCCATAACCGGAACGGGCCACCCGGCG
CGAGTCCGCCCCCGCTCGCAGCGCAGTGCTTAGCGAACGGCATTGCCCCC
ACGAACTATTGGTATGAGTACGGCAGGCACGAATCACTTACGATTACTCT
TTCAAATTGTCGCGGGAGTGGTTTGTTCGGCAGGTGCGATTTTACCCGGT
CTAGCACGTAGCGATGCGCGTGTGTACGTTGCCAAGGACGTAATATTTGG
GCGCCCTTGGTGCCCACTGTGTGACGGGGAGTAGGTCTGCGATGTTTGTA
GGCTAGACGAACCTGCGCCGCTTCGGCAAGGTGCGTAGTTTCGACGGGGG
GAGGGGGGCATTCAGAGACAATAGGCGCAGTTGCTGTTCCTGAAAGTACG
AACAAACGTTGCGAGTGAGCCCTCAACGCTCCACATAATTTTACAGCGCG
CACCACGTCGAAACTTTGCGGGTGATATCGTACCCGATTTGTCGGCCGGC
AAATGTATTTGTTCCCGGTAGGGAGGAAGGGAGGGATGGACGGAGGGAGG
GTGCAGACATGGTCACCACTTTTGATATTTTCGTCTCGAGAAGAAAGAAG
GCGCCTACCGTCGTGGCTTGGGGTTAAATCGCCACCATGACGGACAAGAA
TTGCGGCCAGCTAGCTACCTGCAGTTTCAATTGGCCCGTTCCTTGAAATC
AGCATGGTAGGTTCTACTCCCTGCAAGCGCGACGTTTTGTCCGACACGCC
CGCCCCGCAGCGCCCTGAAGCCACCCAGGTTGCCTTCTTTGCTCCTCTTT
GCGCATTGCGCAGTGCGTGACACATTGCCGGGCGTTCATGGAAGCTGCAC
ACCGGGGATCATACGATGACGATGTTTTTTTTGCCGTGCACATTCTGGCA
AGTTACCATGTCTGAAATACGGCCAGTTCACCATTTTGGTTATTTTTGGT
CCACAGTCC
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Coding sequence (CDS) from alignment at S-dermatodea_contig881:5007..10315-

>mRNA_S-dermatodea_contig881.16948.1 ID=mRNA_S-dermatodea_contig881.16948.1|Name=mRNA_S-dermatodea_contig881.16948.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2046bp|location=Sequence derived from alignment at S-dermatodea_contig881:5007..10315- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCCTTGCGACTGGGTCAAGCCGCCAGGGCGCTGGGCAACCTTGGCCA
GCGCACCAGCCTGAGCAACGCAACTGCGGCGACGGGCGGGGTCGGTGCTT
CATTGTCACGTCGAAGAGGTAACGGCAGCGACGTCAACAGCAGCATCAGC
AGCAGCAACAGCAACGCGGGATCCCTGTCATGTCGGCAACATGGCATCTC
TGGCACGGCCCATCGCTGCTCCTCTACCACCACATCGAACGTTGGACTGC
CGGTCCCTCTCCCCTTCGAAGAGACCAAATGGCCTTGCGACTGGGTCAAG
CCGCCAGGGCGCTGGGCAACCTTGGCCAGCGCACCAGCCTGAGCAACGCA
ACTGCGGCGACGGGCGGGGTCGGTGCTTCATTGTCACGTCGAAGAGGTAA
CGGCAGCGACGTCAACAGCAGCATCAGCAGCAGCAACAGCAACGCGGGAT
CCCTGTCATGTCGGCAACATGGCATCTCTGGCACGGCCCATCGCTGCTCC
TCTACCACCACATCGAACGTTGGACTGCCGGTCCCTCTCCCCTTCGAAGA
GACCAAGTTCAACAGTGCAATGGTGGACGTCTCGAAGATCCAGGTCGAGG
ATACCGCTGACTTCGCGCTCAAGCTTTTCTCCACAGTCGACCTCCTGCGC
AAGAGTCGCAAAGCGGGTTCAACAGTGCAATGGTGGACGTCTCGAAGATC
CAGGTCGAGGATACCGCTGACTTCGCGCTCAAGCTTTTCTCCACAGTCGA
CCTCCTGCGCAAGAGTCGCAAAGCGGCGATGTGGCTCAAGGTGCCGGTGG
ACTTCTGCCACTACATCTCTGTGGCGGCCCACTATGGCTTTCAGTTCCAC
CATACCCAGCCCAAGTACGTAATGATGTGCCTGTGGATGCCGGAGGACGT
CCCCAACAAGGTCCCCCCATATGGCACGCACCACCTCGGTGTAGCAGCGA
TGTGGCTCAAGGTGCCGGTGGACTTCTGCCACTACATCTCTGTGGCGGCC
CACTATGGCTTTCAGTTCCACCATACCCAGCCCAAGTACGTAATGATGTG
CCTGTGGATGCCGGAGGACGTCCCCAACAAGGTCCCCCCATATGGCACGC
ACCACCTCGGTGTAGCAGGTTGTGTGGTGAACGACAACCGCGAGGTACTG
CTGGTTAAGGAAAAGCACAAGCAGGCTATGTGGAAGTTTCCGGGAGGGCT
GGCGGACCCCGGGGAAGGGATCGGTGAGGCCGCGGTCCGGGAGGTGTTCG
AGGAAACGGGCGTCGAGGCAGATTTCCGGTCGGTGCTGAGCATGCGACAC
CAGCACGACGTCCAGTTCGGGAACAGCGACCTGTACTTCGTCTGCCGGCT
GATGCCGAAGGAAGGAGGGGCGCTGGACATCACCAAGTGCAGCCACGAGA
TCGACGACGCGTGCTGGATGCCGCTGGATCAGTTCAAGAAGCAGACCCGG
CACTCGATGCTGGCGGTTGTGGCGGACATGCTCGAGGATCCCGAGGCGCA
GGAGCTGACGAGGTTGTGTGGTGAACGACAACCGCGAGGTACTGCTGGTT
AAGGAAAAGCACAAGCAGGCTATGTGGAAGTTTCCGGGAGGGCTGGCGGA
CCCCGGGGAAGGGATCGGTGAGGCCGCGGTCCGGGAGGTGTTCGAGGAAA
CGGGCGTCGAGGCAGATTTCCGGTCGGTGCTGAGCATGCGACACCAGCAC
GACGTCCAGTTCGGGAACAGCGACCTGTACTTCGTCTGCCGGCTGATGCC
GAAGGAAGGAGGGGCGCTGGACATCACCAAGTGCAGCCACGAGATCGACG
ACGCGTGCTGGATGCCGCTGGATCAGTTCAAGAAGCAGACCCGGCACTCG
ATGCTGGCGGTTGTGGCGGACATGCTCGAGGATCCCGAGGCGCAGGAGCT
GACGAGGAGTTTGCACAATTCGGCGATTCCCGACCGGGCGCCCTACTTCC
TCTACCACCGCCACACTCCGCCATAAGAGTTTGCACAATTCGGCGATTCC
CGACCGGGCGCCCTACTTCCTCTACCACCGCCACACTCCGCCATAA
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