mRNA_S-dermatodea_contig88089.16946.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig88089.16946.1
Unique NamemRNA_S-dermatodea_contig88089.16946.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig88089.16946.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig88089contigS-dermatodea_contig88089:377..596 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size204
Cds size126
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig88089.16946.1prot_S-dermatodea_contig88089.16946.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig88089 416..557 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925367.929422-UTR-S-dermatodea_contig88089:376..4151622925367.929422-UTR-S-dermatodea_contig88089:376..415Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig88089 377..415 +
1694079885.7327957-UTR-S-dermatodea_contig88089:376..4151694079885.7327957-UTR-S-dermatodea_contig88089:376..415Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig88089 377..415 +
1622925367.9656827-UTR-S-dermatodea_contig88089:557..5961622925367.9656827-UTR-S-dermatodea_contig88089:557..596Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig88089 558..596 +
1694079885.7591271-UTR-S-dermatodea_contig88089:557..5961694079885.7591271-UTR-S-dermatodea_contig88089:557..596Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig88089 558..596 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925367.941384-CDS-S-dermatodea_contig88089:415..4481622925367.941384-CDS-S-dermatodea_contig88089:415..448Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig88089 416..448 +
1694079885.7414093-CDS-S-dermatodea_contig88089:415..4481694079885.7414093-CDS-S-dermatodea_contig88089:415..448Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig88089 416..448 +
1622925367.9544253-CDS-S-dermatodea_contig88089:464..5571622925367.9544253-CDS-S-dermatodea_contig88089:464..557Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig88089 465..557 +
1694079885.751157-CDS-S-dermatodea_contig88089:464..5571694079885.751157-CDS-S-dermatodea_contig88089:464..557Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig88089 465..557 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig88089.16946.1

>prot_S-dermatodea_contig88089.16946.1 ID=prot_S-dermatodea_contig88089.16946.1|Name=mRNA_S-dermatodea_contig88089.16946.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=42bp
MLQIQLETSIYSVEILDTRQMTVDSPARQSFRHVSIRSVLY*
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mRNA from alignment at S-dermatodea_contig88089:377..596+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig88089.16946.1 ID=mRNA_S-dermatodea_contig88089.16946.1|Name=mRNA_S-dermatodea_contig88089.16946.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=220bp|location=Sequence derived from alignment at S-dermatodea_contig88089:377..596+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCCGCGCTTAATCCCGTTCATGAGATTTTGGAGGATAGTATGCTTCAAAT
CCAGCTCGAAACCTCGATATACTCGGTGGAAATAATATTCGGTGGAAATA
CTTGATACCCGACAAATGACTGTCGATAGTCCCGCTCGTCAATCCTTTCG
ACATGTAAGCATACGAAGTGTACTCTACTAGTGCCTCCAAATGCCTCTGG
CTACCTTCCATGGCCGACAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig88089:377..596+

>mRNA_S-dermatodea_contig88089.16946.1 ID=mRNA_S-dermatodea_contig88089.16946.1|Name=mRNA_S-dermatodea_contig88089.16946.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=252bp|location=Sequence derived from alignment at S-dermatodea_contig88089:377..596+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCTTCAAATCCAGCTCGAAACCTCGATATACATGCTTCAAATCCAGCT
CGAAACCTCGATATACTCGGTGGAAATACTTGATACCCGACAAATGACTG
TCGATAGTCCCGCTCGTCAATCCTTTCGACATGTAAGCATACGAAGTGTA
CTCTACTAGTCGGTGGAAATACTTGATACCCGACAAATGACTGTCGATAG
TCCCGCTCGTCAATCCTTTCGACATGTAAGCATACGAAGTGTACTCTACT
AG
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