mRNA_S-dermatodea_contig8808.16944.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8808.16944.1
Unique NamemRNA_S-dermatodea_contig8808.16944.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8808.16944.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8808contigS-dermatodea_contig8808:3447..7626 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size365
Cds size363
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8808.16944.1prot_S-dermatodea_contig8808.16944.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8808 3448..7626 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925367.8245978-CDS-S-dermatodea_contig8808:3447..34891622925367.8245978-CDS-S-dermatodea_contig8808:3447..3489Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8808 3448..3489 -
1694079885.680674-CDS-S-dermatodea_contig8808:3447..34891694079885.680674-CDS-S-dermatodea_contig8808:3447..3489Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8808 3448..3489 -
1622925367.8363278-CDS-S-dermatodea_contig8808:6747..68751622925367.8363278-CDS-S-dermatodea_contig8808:6747..6875Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8808 6748..6875 -
1694079885.6918762-CDS-S-dermatodea_contig8808:6747..68751694079885.6918762-CDS-S-dermatodea_contig8808:6747..6875Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8808 6748..6875 -
1622925367.8495085-CDS-S-dermatodea_contig8808:7433..76261622925367.8495085-CDS-S-dermatodea_contig8808:7433..7626Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8808 7434..7626 -
1694079885.7033668-CDS-S-dermatodea_contig8808:7433..76261694079885.7033668-CDS-S-dermatodea_contig8808:7433..7626Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8808 7434..7626 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8808.16944.1

>prot_S-dermatodea_contig8808.16944.1 ID=prot_S-dermatodea_contig8808.16944.1|Name=mRNA_S-dermatodea_contig8808.16944.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=121bp
KQPFYGNEGSGKTEFCSEHKWAGMVAVFNKTCASEGCVKYAVYGLDGRKR
QKLLCNRHFTEGHQAFKAAKAMEEAKEMAAEAGGHVALLNTRERAVRVER
FPRQLQKFEAQVAFDADIPSK
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mRNA from alignment at S-dermatodea_contig8808:3447..7626-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8808.16944.1 ID=mRNA_S-dermatodea_contig8808.16944.1|Name=mRNA_S-dermatodea_contig8808.16944.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4180bp|location=Sequence derived from alignment at S-dermatodea_contig8808:3447..7626- (Saccorhiza dermatodea SderLu1190fm monoicous)
AAGCAACCATTTTACGGCAATGAGGGCAGCGGAAAAACGGAGTTCTGTAG
CGAACACAAGTGGGCGGGTATGGTAGCCGTTTTTAACAAAACGTGCGCCA
GCGAGGGTTGCGTTAAGTACGCAGTGTACGGTCTGGATGGCAGAAAACGA
CAAAAGTTGCTTTGCAATCGACACTTCACGGAGGGCCACCAAGGTAAGCA
CGATAATGTACACGTTTCATCTAATCATGTTTGTTGGAACGCCAGCTCCT
ATAGCGGCGCCGTTTCTTGTCCATTTGGCTTTTGACTTGTGACATGTATT
GTATTGAGTCTTGTTGACGTAATTTGTTATTGTTGCAGTCTCCAGCCCGC
CGAGCAGTCCTCGGCGGGTCGTTCGTAGGCGTGGACGGTACAGCACACGT
CAGCTAGGCAAACACCGCACGCGCGTACCACAATTGTTTTATTGTGTTGC
CTTGACTCGTGATCCCATTATATTCGAATTAGACCCTCATGGTGTACGAG
GAGCACAACTGGCAGACGTCTTCTAGTACTGCGATTCGATGGTGTGCGAA
TGCATGTCAAGCACCCGCCTTCTGAGTTCGGTTCGTCATCGTGCGATCTG
TGTTGCATCGTTACTGGAAACGCTCACCACTCGCGCATGGCCGCTGACTG
GTTGTGTTTCAGCAAGTCCTTTTTTTCATAGTCTCGCCATGATCTTCACT
TGTTAACAGTTGACAGTGCGATTGTACCTTTGTTGTGTGCTGGAGCATCA
GCATTTAAAGCAGCAAAGGCAATGGAGGAGGCCAAGGAGATGGCAGCAGA
AGCTGGTGGGCATGTTGCTCTCTTGAATACAAGGGAGCGGGCCGTGAGGG
TCGAGCGCTTTCCACGGCAATTGCAGAAGGTGTGTGCGCTGCTCTCTTTG
GGCAGTACTGTGGTGTACTTTGTTTGTAGTAGCGGGATAGGAAATGGGAA
GGGCTACAGCTTTTGCCTGGCCCATTCGATTTTCCTTGCGAAAGCTTAGT
CGGGTGTGGATTAAACCTAGAACCGAACAACCAGCGGTGGGAGCGACTTG
CACGGTTAAAATATTTCGCAACAAAGAGGGATCACGCCGAACCCCCGAAG
CTTCTCCCGATGATACATGTTACCGACCACACCGGTGTTGAGAGTACTCG
AGCTCGATCTGTTTTCCTAGAGGAGCCAATACAATAGGAACGACGTGCGC
TGTTGGGGACTACCGTACTTTGATTTCGCGAGAAACCGATGTTTTCTCTG
TTGAGAACTCATATCCTGCGTGCCCTTCGTACTTTAAATATTTGGGGCCT
GTATGTGTTAAGACTTTATATCGTTGATATTCGATGCTGCGGTGACGACC
ATCGCCTTCGCAGATGTTATTAATTTTATACAACGAGCGCGTCATGGTTT
GGTTTGAACCGGCCGAAGATGTACTTCAAACCCATGATATGAGTTGCGGG
TGCGTATTTAAGCATCGACACGCTGTTGAAAGTAGCTTCCTTCTACAGCG
AAGGCGTCGGATCGCCGGTCTTTTGGAGGCTACCTAGAGTTGCAGTTAGG
GGAACAATTTCGTCCTGCTTATTTTCACGGGTGGTAGTTGTCTATGAGAG
CCAAACGCCATGCTGTTCGACTATCTTCTTAAGGTGCGGCTGCCACGAAA
AGTCGTTCTATGTCGGTTTCCTGACGTCAAACCTGCGATGTCACGATGAG
CATTGCGTGAATACACTAGAATCAGCGGCTGTTCTCAGTCAAAGAGAAAG
ACCCGTCTACCAGGACGTCCACACACGACGCTTCCATCATCACCAGCAGC
AGCAATTTGCCGCACCGTGACGTGCTAATCCTGAACATGCTGTCGGGCGG
TTTTTGGAAATTGAACTCGCCAATGGTTTGTCGTCCAAAGGACCCTTACT
TTGAGACAAAGTGACGCCGCGTAATGTCCAAGAAAAGGGCCCTTGGCAGA
TTGTCTTGGTCAGACCCGCCCGTAAAGCCCCGTGCCAGGTGTTTGGAGCT
ATTTCACGTCTTTTTCGCCTAACATATACCATTAGCGTTAACTTTATCGA
CCCTGCGGTTTTTTCACTCCTGCCCTTTGTGCAGGTTGCATCTGCGTGGG
CATCGGCTGTCGTCATGTTTTGTATTGCTGTCCATGAAGGTGTACTGCAA
CACCTGTTGTGGTTGCGAACCTTTCTACCTCCCCTTCACCTCACCGCAAG
GAATGAGGCTGTTTATTTTGGATGTCAAGTCTAACCTATGGATTATTTTT
GGTAATTGGTGAAACGTACTGGGCGTTGTTTGTGGTCCTTCAAAGGGCAA
GCAGATGCGAGTTCTTGAAAGGGAGAAGTGCAACCCATCGTAAGATGTAC
ACCAGGTATGCATCGATCATAACGAACACGATGAGGTTATGGTTTATGAG
ACTCATCCTCTTGCTCCAAGGGATCCCGAACACATTGCCGTAGGCCATAC
TACTGTTTTGTTATTCTCGCAGCGGGTACAGTACGCTTAAGTACACCACC
TGACGGTATACCCTAGCTTAGCTCGTTAATACTGCACGAGGTAAACTATC
TCGAGTTGAAACTCTTACCGAACCTCTACCTGCCAGATTCCAATGGCAGT
GTCCCTCTCTTATTGTTTTAGTCGGATACGTCACCAATGTTGAGGTTGTG
TTACCTTTACTCTCGCCTCCCGCATCTTCCCCGAGGAGGCAAAAGGGGGA
CTATCCATTAGTCTAGACCGGTAGCATGTGACAAGGCCTCGCCCTTCCCA
ACCTCTTACGCGGAGTCGCCCAAAGACTAAGCACCCGCCCCGCTCTGATC
ATTGCCGATGTTACCTGCGAAACAACGCGACACTGTTCGTCAAGTGCTTC
TACTCTGTCCCTAGTCTCGGCTGTCGCATTGTCCGGTCGCCGTCACCAGT
AACTTCCACATCCGACACCCTTCCAACATATCTGCCGTGATTCCTCATGT
ACAAACTTCATGAGCGCCATACCTGTATCTGCCATATTTCTGCAAAATGC
CCGAGTCTACATCGCCCGCACAGAGATGCATCACACCTTCACGTGGAGTT
CTACACTCGTTACGAATACGGCAGCAACCTTCGCCAAGGCGTTTGATGAT
CCGCCTCTTCCATCATGTCCCCCCCGGTCTCGGAAACCCCCAATCGGGCA
ACGAGGGTGCTCTTTGCCTGACAATGTAAATATATCGGTTATCGCTACTC
CATAGCTGTCGTAGGTAAGAGTTTGTTTGCGTCACGTGCACCACACATAC
ACGTAAAACCGCGTGGCTCCGTAGGTCAACAGGGACGAATGGTTGTGATA
AAAAAACGGGTGATTAACGCGCTGGTCGCCTTGCGGGTCTCAATATATTG
TTCGATGCAGCAGCAGAGCTGTCGCCACTGCTGCAACATGCCTCCATAAC
TTCAGGAGTGGCGGCGTGACGCTCTCGCGTACGATTTTTACTCGGGCGCA
CGAACATCCTCTCTCGGCGCCACCGCGCGCCCGCACCAATCAATATTTGA
AAAGGCACGAAGGCTCAACGCGGCGAGACAATGCTCAGATGCCCGAGATT
GGCGACCCGCGCTCTCCATCGGGTACATGTATCCGAACTAACCTCTCGCT
TTCGTGCCCTCCTCTCGTTTGCTTTATATTCCTCGCTAATTTGGAGCTCA
ACGTCCTCGTATACGTGGCCTGTGTATCTCAGCCAGGCACCTGCCAAACA
GTCGCAATATGGTGTGTTTTTTCTTCGGGCATAACTGGGCCGAGAGAGCG
ATCCGAAGGCGTTTCCTTGCTGATATACACATATTTGTTTCGACCGTTTT
TTCTTTCTTCGGGCAATATGGTCTCACAGTGTGTGCTCAGAAACGATGCA
GATCGAATGCCGCAGATCGTAACTACCCCTCCTTTTTGTTTAGGCGTAGC
GCGCGAAATTTGTACCCGCAGAAGAGAATCCCGATTCCTCCGTGGGGTTT
CAAGCCATTGCTGGGTGCGGGAGCTCTTTGTAGGTTTATACAAAGAACCA
AGAGGCCCACTACGATGTAAATGTGCATCCAGTCACGTATGGTATGATGT
ACGCAGGGCCGACACAATGCGTGGTTCGCTTGCTTCAATCCGCACCTATC
GCTGACCCCGCTCTCTGCCTTTACGGTTGAGATGAAGTTCGAGGCACAGG
TGGCGTTCGATGCGGACATTCCCTCCAAGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig8808:3447..7626-

>mRNA_S-dermatodea_contig8808.16944.1 ID=mRNA_S-dermatodea_contig8808.16944.1|Name=mRNA_S-dermatodea_contig8808.16944.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=726bp|location=Sequence derived from alignment at S-dermatodea_contig8808:3447..7626- (Saccorhiza dermatodea SderLu1190fm monoicous)
AAGCAACCATTTTACGGCAATGAGGGCAGCGGAAAAACGGAGTTCTGTAG
CGAACACAAGTGGGCGGGTATGGTAGCCGTTTTTAACAAAACGTGCGCCA
GCGAGGGTTGCGTTAAGTACGCAGTGTACGGTCTGGATGGCAGAAAACGA
CAAAAGTTGCTTTGCAATCGACACTTCACGGAGGGCCACCAAGAAGCAAC
CATTTTACGGCAATGAGGGCAGCGGAAAAACGGAGTTCTGTAGCGAACAC
AAGTGGGCGGGTATGGTAGCCGTTTTTAACAAAACGTGCGCCAGCGAGGG
TTGCGTTAAGTACGCAGTGTACGGTCTGGATGGCAGAAAACGACAAAAGT
TGCTTTGCAATCGACACTTCACGGAGGGCCACCAAGCATTTAAAGCAGCA
AAGGCAATGGAGGAGGCCAAGGAGATGGCAGCAGAAGCTGGTGGGCATGT
TGCTCTCTTGAATACAAGGGAGCGGGCCGTGAGGGTCGAGCGCTTTCCAC
GGCAATTGCAGAAGCATTTAAAGCAGCAAAGGCAATGGAGGAGGCCAAGG
AGATGGCAGCAGAAGCTGGTGGGCATGTTGCTCTCTTGAATACAAGGGAG
CGGGCCGTGAGGGTCGAGCGCTTTCCACGGCAATTGCAGAAGTTCGAGGC
ACAGGTGGCGTTCGATGCGGACATTCCCTCCAAGTTCGAGGCACAGGTGG
CGTTCGATGCGGACATTCCCTCCAAG
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