mRNA_S-dermatodea_contig880.16938.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig880.16938.1
Unique NamemRNA_S-dermatodea_contig880.16938.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig880.16938.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig880contigS-dermatodea_contig880:5018..5629 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size612
Cds size471
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925367.4789622-CDS-S-dermatodea_contig880:5017..54881622925367.4789622-CDS-S-dermatodea_contig880:5017..5488Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig880 5018..5488 +
1694079885.4862535-CDS-S-dermatodea_contig880:5017..54881694079885.4862535-CDS-S-dermatodea_contig880:5017..5488Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig880 5018..5488 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925367.489152-UTR-S-dermatodea_contig880:5488..56291622925367.489152-UTR-S-dermatodea_contig880:5488..5629Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig880 5489..5629 +
1694079885.495141-UTR-S-dermatodea_contig880:5488..56291694079885.495141-UTR-S-dermatodea_contig880:5488..5629Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig880 5489..5629 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig880.16938.1prot_S-dermatodea_contig880.16938.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig880 5018..5488 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig880.16938.1

>prot_S-dermatodea_contig880.16938.1 ID=prot_S-dermatodea_contig880.16938.1|Name=mRNA_S-dermatodea_contig880.16938.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=157bp
MRAGGRGGGSCRRQVEKLSRCFELCWLCASGSTLHAHGVTFFSSLFYCFL
FVCVCVCVSVLCALFLFFSYFLFSRRICANKRVVPLLRLLCFSFCHTPYA
HILRLAHGVWVLAAYSMCVPFCFVPAPPLVGRPTVTSTTADGLKKARRGR
FTSGMI*
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mRNA from alignment at S-dermatodea_contig880:5018..5629+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig880.16938.1 ID=mRNA_S-dermatodea_contig880.16938.1|Name=mRNA_S-dermatodea_contig880.16938.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=612bp|location=Sequence derived from alignment at S-dermatodea_contig880:5018..5629+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAGGGCTGGGGGGAGGGGGGGGGGGTCATGTCGCCGTCAGGTTGAAAA
GTTAAGCCGGTGTTTCGAGTTGTGTTGGTTGTGCGCCTCTGGTTCGACCT
TGCACGCGCACGGGGTAACTTTTTTTTCTTCCCTTTTTTACTGCTTTTTG
TTTGTTTGTGTATGTGTATGTGTGTCTGTGTTGTGTGCACTTTTTTTATT
TTTTTCATATTTTTTGTTTTCCAGGCGCATATGTGCAAACAAACGTGTTG
TGCCTTTGTTGCGTCTTCTTTGTTTCTCTTTTTGTCACACTCCGTATGCA
CACATCCTTCGCTTGGCGCACGGCGTGTGGGTCTTGGCCGCGTACAGTAT
GTGTGTGCCGTTTTGTTTCGTTCCTGCTCCGCCCCTGGTTGGCAGGCCCA
CCGTCACTTCGACGACGGCGGATGGCTTAAAAAAAGCCAGGCGTGGTAGA
TTCACGAGTGGTATGATATAGTGGCCGCGGCTCGCGGAGCGCCGTCCGCG
GTATTTCTGGTTGTTTCTCCCTCTACGCAGTGAACTGTCTCGAGCGAGGG
TGGAGGCGTTTGTCGAAAAAAAAATGAAGAAAGTTTGTGCTCGTGCTGGT
GTACTTGTGTCT
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Coding sequence (CDS) from alignment at S-dermatodea_contig880:5018..5629+

>mRNA_S-dermatodea_contig880.16938.1 ID=mRNA_S-dermatodea_contig880.16938.1|Name=mRNA_S-dermatodea_contig880.16938.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=942bp|location=Sequence derived from alignment at S-dermatodea_contig880:5018..5629+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAGGGCTGGGGGGAGGGGGGGGGGGTCATGTCGCCGTCAGGTTGAAAA
GTTAAGCCGGTGTTTCGAGTTGTGTTGGTTGTGCGCCTCTGGTTCGACCT
TGCACGCGCACGGGGTAACTTTTTTTTCTTCCCTTTTTTACTGCTTTTTG
TTTGTTTGTGTATGTGTATGTGTGTCTGTGTTGTGTGCACTTTTTTTATT
TTTTTCATATTTTTTGTTTTCCAGGCGCATATGTGCAAACAAACGTGTTG
TGCCTTTGTTGCGTCTTCTTTGTTTCTCTTTTTGTCACACTCCGTATGCA
CACATCCTTCGCTTGGCGCACGGCGTGTGGGTCTTGGCCGCGTACAGTAT
GTGTGTGCCGTTTTGTTTCGTTCCTGCTCCGCCCCTGGTTGGCAGGCCCA
CCGTCACTTCGACGACGGCGGATGGCTTAAAAAAAGCCAGGCGTGGTAGA
TTCACGAGTGGTATGATATAGATGAGGGCTGGGGGGAGGGGGGGGGGGTC
ATGTCGCCGTCAGGTTGAAAAGTTAAGCCGGTGTTTCGAGTTGTGTTGGT
TGTGCGCCTCTGGTTCGACCTTGCACGCGCACGGGGTAACTTTTTTTTCT
TCCCTTTTTTACTGCTTTTTGTTTGTTTGTGTATGTGTATGTGTGTCTGT
GTTGTGTGCACTTTTTTTATTTTTTTCATATTTTTTGTTTTCCAGGCGCA
TATGTGCAAACAAACGTGTTGTGCCTTTGTTGCGTCTTCTTTGTTTCTCT
TTTTGTCACACTCCGTATGCACACATCCTTCGCTTGGCGCACGGCGTGTG
GGTCTTGGCCGCGTACAGTATGTGTGTGCCGTTTTGTTTCGTTCCTGCTC
CGCCCCTGGTTGGCAGGCCCACCGTCACTTCGACGACGGCGGATGGCTTA
AAAAAAGCCAGGCGTGGTAGATTCACGAGTGGTATGATATAG
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