mRNA_S-dermatodea_contig88.16937.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig88.16937.1 vs. uniprot
Match: D7FWP4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWP4_ECTSI) HSP 1 Score: 207 bits (528), Expect = 3.700e-63 Identity = 99/105 (94.29%), Postives = 102/105 (97.14%), Query Frame = 1
Query: 13 QMVNIPKERRTYCKGKKCTKHTVHKVTQYKSGKASNFAQGKRRYDHKQRGFGGQTKPIFHKKAKTTKKVTLRLECKECKAKKQLVIARCKHFELGEKKQATGHQY 327
+MVN+PKERRTYCK K+C KHTVHKVTQYKSGKASNFAQGKRRYDHKQRGFGGQTKPIFHKKAKTTKKVTLRLECK CKAKKQLVIARCKHFELGEKKQATGHQY
Sbjct: 34 EMVNVPKERRTYCKDKRCNKHTVHKVTQYKSGKASNFAQGKRRYDHKQRGFGGQTKPIFHKKAKTTKKVTLRLECKLCKAKKQLVIARCKHFELGEKKQATGHQY 138
BLAST of mRNA_S-dermatodea_contig88.16937.1 vs. uniprot
Match: A0A835YP36_9STRA (Zinc-binding ribosomal protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP36_9STRA) HSP 1 Score: 197 bits (501), Expect = 1.400e-59 Identity = 94/104 (90.38%), Postives = 99/104 (95.19%), Query Frame = 1
Query: 16 MVNIPKERRTYCKGKKCTKHTVHKVTQYKSGKASNFAQGKRRYDHKQRGFGGQTKPIFHKKAKTTKKVTLRLECKECKAKKQLVIARCKHFELGEKKQATGHQY 327
MVN+PKERRTYCK KKC KHTVHKV+QYKSGKASNFAQGKRRYD KQ+G+GGQTKPIFHKKAKTTKKVTLRLECKECKAKKQLVI RCKHFELGEKK+ATGH Y
Sbjct: 1 MVNVPKERRTYCKSKKCGKHTVHKVSQYKSGKASNFAQGKRRYDSKQKGYGGQTKPIFHKKAKTTKKVTLRLECKECKAKKQLVIKRCKHFELGEKKKATGHVY 104
BLAST of mRNA_S-dermatodea_contig88.16937.1 vs. uniprot
Match: F0YGF9_AURAN (RL44_PICJA 60S ribosomal protein L44 n=2 Tax=Pelagomonadales TaxID=54409 RepID=F0YGF9_AURAN) HSP 1 Score: 192 bits (487), Expect = 1.760e-57 Identity = 90/104 (86.54%), Postives = 95/104 (91.35%), Query Frame = 1
Query: 16 MVNIPKERRTYCKGKKCTKHTVHKVTQYKSGKASNFAQGKRRYDHKQRGFGGQTKPIFHKKAKTTKKVTLRLECKECKAKKQLVIARCKHFELGEKKQATGHQY 327
MVN+PKER+TYCK KKC KHT HKVTQYK+GKASNFAQGKRRYD KQ GFGGQTKP+FHKKAKTTKKVTLRLECKECKAKKQL I RCKHFELGEKK+ TGH Y
Sbjct: 1 MVNVPKERKTYCKAKKCRKHTTHKVTQYKAGKASNFAQGKRRYDMKQMGFGGQTKPVFHKKAKTTKKVTLRLECKECKAKKQLTIKRCKHFELGEKKKTTGHTY 104
BLAST of mRNA_S-dermatodea_contig88.16937.1 vs. uniprot
Match: A0A7S2UXA0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXA0_9STRA) HSP 1 Score: 189 bits (481), Expect = 1.400e-56 Identity = 88/104 (84.62%), Postives = 96/104 (92.31%), Query Frame = 1
Query: 16 MVNIPKERRTYCKGKKCTKHTVHKVTQYKSGKASNFAQGKRRYDHKQRGFGGQTKPIFHKKAKTTKKVTLRLECKECKAKKQLVIARCKHFELGEKKQATGHQY 327
MVN+PKERRTYCK K C KHT+HKVTQYK+GKASNFAQGKRRYDHKQ+G+GGQTKPIFHKKAKTTKK+ LRLECKECK KKQLVI R KHFELGEKK++TG QY
Sbjct: 1 MVNVPKERRTYCKAKNCNKHTIHKVTQYKAGKASNFAQGKRRYDHKQKGYGGQTKPIFHKKAKTTKKIVLRLECKECKTKKQLVIKRTKHFELGEKKKSTGPQY 104
BLAST of mRNA_S-dermatodea_contig88.16937.1 vs. uniprot
Match: W7TXG3_9STRA (60s ribosomal protein l44 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TXG3_9STRA) HSP 1 Score: 188 bits (478), Expect = 3.930e-56 Identity = 90/104 (86.54%), Postives = 97/104 (93.27%), Query Frame = 1
Query: 16 MVNIPKERRTYCKGKKCTKHTVHKVTQYKSGKASNFAQGKRRYDHKQRGFGGQTKPIFHKKAKTTKKVTLRLECKECKAKKQLVIARCKHFELGEKKQATGHQY 327
MV IPKER+T+CKGKKC KHTVHKVTQYK+GKASN+AQGKRRYD KQ+G+GGQTKPI HKKAKTTKKVTLRLECKECK KKQLVI R KHFELGEKK+ATGHQY
Sbjct: 1 MVCIPKERKTFCKGKKCKKHTVHKVTQYKAGKASNYAQGKRRYDRKQQGYGGQTKPILHKKAKTTKKVTLRLECKECKTKKQLVIKRTKHFELGEKKKATGHQY 104
BLAST of mRNA_S-dermatodea_contig88.16937.1 vs. uniprot
Match: A0A7S3NIT2_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NIT2_9STRA) HSP 1 Score: 187 bits (475), Expect = 1.070e-55 Identity = 89/100 (89.00%), Postives = 95/100 (95.00%), Query Frame = 1
Query: 16 MVNIPKERRTYCKGKKCTKHTVHKVTQYKSGKASNFAQGKRRYDHKQRGFGGQTKPIFHKKAKTTKKVTLRLECKECKAKKQLVIARCKHFELGEKKQAT 315
MVN+PKERRTYCKGKKC KHTVHKVTQYK+GKASNFAQGKRRYD KQ+G+GGQTKPIFHKKAKTTKKV LRLECKECKAKKQL I RCKHFELGEKK++T
Sbjct: 1 MVNVPKERRTYCKGKKCKKHTVHKVTQYKAGKASNFAQGKRRYDAKQQGYGGQTKPIFHKKAKTTKKVVLRLECKECKAKKQLCIKRCKHFELGEKKKST 100
BLAST of mRNA_S-dermatodea_contig88.16937.1 vs. uniprot
Match: A0A485LSL1_9STRA (Aste57867_25253 protein n=7 Tax=Saprolegniaceae TaxID=4764 RepID=A0A485LSL1_9STRA) HSP 1 Score: 186 bits (472), Expect = 3.120e-55 Identity = 87/104 (83.65%), Postives = 97/104 (93.27%), Query Frame = 1
Query: 16 MVNIPKERRTYCKGKKCTKHTVHKVTQYKSGKASNFAQGKRRYDHKQRGFGGQTKPIFHKKAKTTKKVTLRLECKECKAKKQLVIARCKHFELGEKKQATGHQY 327
MVNIPKERRT+CKGKKC KHTVHKVTQYK+GKAS FAQG RRY+ KQ+GFGGQTKP+FHKKAKTTKK+TLR+ECKECKAKKQL I R KHFELGEKK+++GHQY
Sbjct: 1 MVNIPKERRTFCKGKKCRKHTVHKVTQYKAGKASKFAQGARRYNEKQQGFGGQTKPVFHKKAKTTKKITLRMECKECKAKKQLPIKRTKHFELGEKKKSSGHQY 104
BLAST of mRNA_S-dermatodea_contig88.16937.1 vs. uniprot
Match: A0A418ASI0_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418ASI0_9STRA) HSP 1 Score: 187 bits (474), Expect = 5.820e-55 Identity = 87/105 (82.86%), Postives = 98/105 (93.33%), Query Frame = 1
Query: 13 QMVNIPKERRTYCKGKKCTKHTVHKVTQYKSGKASNFAQGKRRYDHKQRGFGGQTKPIFHKKAKTTKKVTLRLECKECKAKKQLVIARCKHFELGEKKQATGHQY 327
QMVNIPKERRT+CKGKKC KHTVHKVTQYK+GKAS +AQG RRY+ KQ+GFGGQTKP+FHKKAKTTKK+TLR+ECKECKAKKQL I R KHFELGEKK+++GHQY
Sbjct: 41 QMVNIPKERRTFCKGKKCRKHTVHKVTQYKAGKASKYAQGARRYNEKQQGFGGQTKPVFHKKAKTTKKITLRMECKECKAKKQLPIKRTKHFELGEKKKSSGHQY 145
BLAST of mRNA_S-dermatodea_contig88.16937.1 vs. uniprot
Match: A0A7S3LII2_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LII2_9STRA) HSP 1 Score: 185 bits (470), Expect = 6.210e-55 Identity = 85/104 (81.73%), Postives = 95/104 (91.35%), Query Frame = 1
Query: 16 MVNIPKERRTYCKGKKCTKHTVHKVTQYKSGKASNFAQGKRRYDHKQRGFGGQTKPIFHKKAKTTKKVTLRLECKECKAKKQLVIARCKHFELGEKKQATGHQY 327
MVN+PKERRT+CKGKKC KHT+HKVTQYK+GKASNFAQGKRRYD KQ+G+GGQTKP+FHKKAKTTKKV +RLECK+CK K QL + RCKHFELGEKK TGHQY
Sbjct: 1 MVNVPKERRTFCKGKKCLKHTMHKVTQYKAGKASNFAQGKRRYDRKQQGYGGQTKPVFHKKAKTTKKVVIRLECKDCKTKFQLRLKRCKHFELGEKKAPTGHQY 104
BLAST of mRNA_S-dermatodea_contig88.16937.1 vs. uniprot
Match: I6ZGD0_9STRA (Ribosomal protein L44 n=1 Tax=Aurantiochytrium sp. KRS101 TaxID=797128 RepID=I6ZGD0_9STRA) HSP 1 Score: 185 bits (469), Expect = 8.770e-55 Identity = 86/104 (82.69%), Postives = 96/104 (92.31%), Query Frame = 1
Query: 16 MVNIPKERRTYCKGKKCTKHTVHKVTQYKSGKASNFAQGKRRYDHKQRGFGGQTKPIFHKKAKTTKKVTLRLECKECKAKKQLVIARCKHFELGEKKQATGHQY 327
MVN+PKERRT+CKGK+C KHTVHKVTQYK+GKASNFAQGKRRYD KQ+G+GGQTKPIFHKKAKTTKKVTLRLECKECK K Q+ + RCK FELG+KK+A GHQY
Sbjct: 1 MVNVPKERRTFCKGKQCRKHTVHKVTQYKAGKASNFAQGKRRYDRKQKGYGGQTKPIFHKKAKTTKKVTLRLECKECKTKCQIGLKRCKTFELGQKKEAAGHQY 104 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig88.16937.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig88.16937.1 >prot_S-dermatodea_contig88.16937.1 ID=prot_S-dermatodea_contig88.16937.1|Name=mRNA_S-dermatodea_contig88.16937.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=105bp MVNIPKERRTYCKGKKCTKHTVHKVTQYKSGKASNFAQGKRRYDHKQRGFback to top mRNA from alignment at S-dermatodea_contig88:11532..14765+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig88.16937.1 ID=mRNA_S-dermatodea_contig88.16937.1|Name=mRNA_S-dermatodea_contig88.16937.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3234bp|location=Sequence derived from alignment at S-dermatodea_contig88:11532..14765+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig88:11532..14765+ >mRNA_S-dermatodea_contig88.16937.1 ID=mRNA_S-dermatodea_contig88.16937.1|Name=mRNA_S-dermatodea_contig88.16937.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=630bp|location=Sequence derived from alignment at S-dermatodea_contig88:11532..14765+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |