mRNA_S-dermatodea_contig87920.16929.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig87920.16929.1
Unique NamemRNA_S-dermatodea_contig87920.16929.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig87920.16929.1 vs. uniprot
Match: A0A6H5KYQ2_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYQ2_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 1.260e-21
Identity = 50/100 (50.00%), Postives = 66/100 (66.00%), Query Frame = 1 
Query:   46 GNSLPVLVDSGASEHYFDDLLAPGLRDKLSDYTVLQVPRTITTAGNHELKGVATGVLSGTIADSQGVKQAVGLPIVVVPGLGRNLFSVPAATARGVITTF 345
            G+S+ +LVDSGA+++Y D  L PG+R  + D   L++P  I TAG H L GV TGVL GT+ D  G  + V   +V+VPGLG NLFSV AA + GV + F
Sbjct:  415 GSSILMLVDSGATDNYLDPALTPGVRAHMRDIEDLRIPLPIITAGQHVLHGVTTGVLFGTVTDDSGQDRQVSFRVVLVPGLGTNLFSVTAALSNGVASLF 514
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BLAST of mRNA_S-dermatodea_contig87920.16929.1 vs. uniprot
Match: A0A6H5KJN3_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN3_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 1.290e-21
Identity = 50/100 (50.00%), Postives = 66/100 (66.00%), Query Frame = 1 
Query:   46 GNSLPVLVDSGASEHYFDDLLAPGLRDKLSDYTVLQVPRTITTAGNHELKGVATGVLSGTIADSQGVKQAVGLPIVVVPGLGRNLFSVPAATARGVITTF 345
            G+S+ +LVDSGA+++Y D  L PG+R  + D   L++P  I TAG H L GV TGVL GT+ D  G  + V   +V+VPGLG NLFSV AA + GV + F
Sbjct:  415 GSSILMLVDSGATDNYLDPALTPGVRAHMRDIEDLRIPLPIITAGQHVLHGVTTGVLFGTVTDDSGQDRQVSFRVVLVPGLGTNLFSVTAALSNGVASLF 514
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BLAST of mRNA_S-dermatodea_contig87920.16929.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 2.440e-21
Identity = 49/100 (49.00%), Postives = 66/100 (66.00%), Query Frame = 1 
Query:   46 GNSLPVLVDSGASEHYFDDLLAPGLRDKLSDYTVLQVPRTITTAGNHELKGVATGVLSGTIADSQGVKQAVGLPIVVVPGLGRNLFSVPAATARGVITTF 345
            G+S+ +LVDSGA+++Y D  L PG+R  + D   L++P  I TAG H L GV TGVL GT+ D  G  + V   +++VPGLG NLFSV AA + GV + F
Sbjct:  415 GSSILMLVDSGATDNYLDPALTPGVRAHMRDIEDLRIPLPIITAGQHVLHGVTTGVLFGTVTDDSGQDRRVSFRVMLVPGLGNNLFSVTAALSNGVASLF 514
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BLAST of mRNA_S-dermatodea_contig87920.16929.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 3.320e-21
Identity = 49/100 (49.00%), Postives = 66/100 (66.00%), Query Frame = 1 
Query:   46 GNSLPVLVDSGASEHYFDDLLAPGLRDKLSDYTVLQVPRTITTAGNHELKGVATGVLSGTIADSQGVKQAVGLPIVVVPGLGRNLFSVPAATARGVITTF 345
            G+S+ +L+DSGA+++Y D  L PG+R  + D   L++P  I TAG H L GV TGVL GT+ D  G  + V   +V+VPGLG NLFSV AA + GV + F
Sbjct:  415 GSSILMLMDSGATDNYLDPALTPGVRAHMRDIEDLRIPLPIITAGQHVLHGVTTGVLFGTVTDDSGQDRQVSFRVVLVPGLGTNLFSVTAALSNGVASLF 514
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BLAST of mRNA_S-dermatodea_contig87920.16929.1 vs. uniprot
Match: A0A6H5JYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB5_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 8.300e-21
Identity = 49/100 (49.00%), Postives = 65/100 (65.00%), Query Frame = 1 
Query:   46 GNSLPVLVDSGASEHYFDDLLAPGLRDKLSDYTVLQVPRTITTAGNHELKGVATGVLSGTIADSQGVKQAVGLPIVVVPGLGRNLFSVPAATARGVITTF 345
            G+S+ +L DSGA+++Y D  L PG+R  + D   L++P  I TAG H L GV TGVL GT+ D  G  + V   +V+VPGLG NLFSV AA + GV + F
Sbjct:  320 GSSILMLEDSGATDNYLDPALTPGVRAHMRDIEDLRIPLPIITAGQHVLHGVTTGVLFGTVTDDSGQDRQVSFRVVLVPGLGTNLFSVTAALSNGVASLF 419
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BLAST of mRNA_S-dermatodea_contig87920.16929.1 vs. uniprot
Match: A0A6H5JVF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVF6_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 2.070e-20
Identity = 47/100 (47.00%), Postives = 64/100 (64.00%), Query Frame = 1 
Query:   46 GNSLPVLVDSGASEHYFDDLLAPGLRDKLSDYTVLQVPRTITTAGNHELKGVATGVLSGTIADSQGVKQAVGLPIVVVPGLGRNLFSVPAATARGVITTF 345
            G+S+ ++VDSGA+++Y D  L PGLR  + D   L+VP TI  AG H LKGV TG + G + D  G  + V   +++VPGLG NLFSV  A  +G+ T F
Sbjct:  594 GSSIRMVVDSGATDNYLDPGLTPGLRAHMRDVEHLRVPHTIVAAGQHVLKGVTTGTIFGAVTDDNGNDRHVSFRVILVPGLGTNLFSVTLAMLKGMATLF 693
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BLAST of mRNA_S-dermatodea_contig87920.16929.1 vs. uniprot
Match: A0A6H5KL30_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL30_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 2.110e-20
Identity = 48/100 (48.00%), Postives = 62/100 (62.00%), Query Frame = 1 
Query:   46 GNSLPVLVDSGASEHYFDDLLAPGLRDKLSDYTVLQVPRTITTAGNHELKGVATGVLSGTIADSQGVKQAVGLPIVVVPGLGRNLFSVPAATARGVITTF 345
            G+S+ ++VDSGA+++Y    L PGLR  + D    +VP TI  AG H LKGVATG + G + D  G  Q V   +++VPGLG NLFSV  A   GV T F
Sbjct:  155 GSSVRIVVDSGATDNYLGPGLTPGLRAHMRDVEHFRVPHTIVAAGRHVLKGVATGTIFGAVTDDNGNDQLVSFRVILVPGLGTNLFSVTLAMLNGVATLF 254
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BLAST of mRNA_S-dermatodea_contig87920.16929.1 vs. uniprot
Match: A0A6H5JWN9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWN9_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 2.720e-20
Identity = 47/95 (49.47%), Postives = 61/95 (64.21%), Query Frame = 1 
Query:   61 VLVDSGASEHYFDDLLAPGLRDKLSDYTVLQVPRTITTAGNHELKGVATGVLSGTIADSQGVKQAVGLPIVVVPGLGRNLFSVPAATARGVITTF 345
            ++VDSGA+++Y D  L PGLR  + D   L+VP TI  AG H LKGVATG + G + D  G  + V   +++VPGLG NLFSV  A  +GV T F
Sbjct:  236 MVVDSGATDNYLDPGLTPGLRTHMRDVEYLRVPHTIVAAGQHVLKGVATGTIFGAVTDDNGNDRHVSFRVILVPGLGTNLFSVTLAMLKGVATLF 330
[Close]
BLAST of mRNA_S-dermatodea_contig87920.16929.1 vs. uniprot
Match: A0A6H5KC00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC00_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 2.870e-20
Identity = 48/100 (48.00%), Postives = 64/100 (64.00%), Query Frame = 1 
Query:   46 GNSLPVLVDSGASEHYFDDLLAPGLRDKLSDYTVLQVPRTITTAGNHELKGVATGVLSGTIADSQGVKQAVGLPIVVVPGLGRNLFSVPAATARGVITTF 345
            G+S+ ++VDSGA+++Y D  L PGLR  + D   L+VP TI  AG H LKGV TG + G + D  G  + V L +++V GLG NLFSV  A  +GV T F
Sbjct:  415 GSSIRMVVDSGATDNYLDPGLTPGLRAHMRDVEHLRVPHTIVAAGQHVLKGVTTGTIFGAVTDDNGNDRHVSLRVILVSGLGTNLFSVTLAMLKGVATLF 514
[Close]
BLAST of mRNA_S-dermatodea_contig87920.16929.1 vs. uniprot
Match: A0A6H5K129_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K129_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 9.960e-20
Identity = 47/100 (47.00%), Postives = 62/100 (62.00%), Query Frame = 1 
Query:   46 GNSLPVLVDSGASEHYFDDLLAPGLRDKLSDYTVLQVPRTITTAGNHELKGVATGVLSGTIADSQGVKQAVGLPIVVVPGLGRNLFSVPAATARGVITTF 345
            G+S+ ++VDSGA++ Y    L PGLR  + D   L+VP TI  AG H LKGVATG + G + D  G  + V   +++VPGLG NLFSV  A  +G  T F
Sbjct:  249 GSSIRMVVDSGATDKYLHPWLTPGLRAHMRDVEHLRVPHTIVAAGQHVLKGVATGTIFGAVRDDNGNDRHVSFRVILVPGLGTNLFSVTLAMLKGAATLF 348
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig87920.16929.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KYQ2_9PHAE1.260e-2150.00CCHC-type domain-containing protein (Fragment) n=1... [more]
A0A6H5KJN3_9PHAE1.290e-2150.00Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5J842_9PHAE2.440e-2149.00Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KJH6_9PHAE3.320e-2149.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYB5_9PHAE8.300e-2149.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVF6_9PHAE2.070e-2047.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KL30_9PHAE2.110e-2048.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JWN9_9PHAE2.720e-2049.47Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KC00_9PHAE2.870e-2048.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K129_9PHAE9.960e-2047.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig87920contigS-dermatodea_contig87920:176..523 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size348
Cds size348
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925366.9292204-CDS-S-dermatodea_contig87920:175..5231622925366.9292204-CDS-S-dermatodea_contig87920:175..523Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig87920 176..523 -
1694079885.139499-CDS-S-dermatodea_contig87920:175..5231694079885.139499-CDS-S-dermatodea_contig87920:175..523Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig87920 176..523 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig87920.16929.1prot_S-dermatodea_contig87920.16929.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig87920 176..523 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig87920.16929.1

>prot_S-dermatodea_contig87920.16929.1 ID=prot_S-dermatodea_contig87920.16929.1|Name=mRNA_S-dermatodea_contig87920.16929.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=116bp
MAEIKNVVNNHSIITGNSLPVLVDSGASEHYFDDLLAPGLRDKLSDYTVL
QVPRTITTAGNHELKGVATGVLSGTIADSQGVKQAVGLPIVVVPGLGRNL
FSVPAATARGVITTFT
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mRNA from alignment at S-dermatodea_contig87920:176..523-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig87920.16929.1 ID=mRNA_S-dermatodea_contig87920.16929.1|Name=mRNA_S-dermatodea_contig87920.16929.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=348bp|location=Sequence derived from alignment at S-dermatodea_contig87920:176..523- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCGGAAATCAAGAACGTTGTCAACAACCACTCCATCATCACCGGCAA
TTCTCTGCCGGTACTTGTGGACAGCGGGGCGTCAGAGCACTACTTTGACG
ATCTGCTGGCTCCTGGACTCCGGGACAAGTTGTCCGACTACACAGTCCTA
CAGGTTCCACGAACAATCACCACTGCGGGCAACCACGAGCTAAAGGGCGT
CGCCACCGGCGTCCTCAGCGGAACCATCGCCGATTCGCAGGGTGTGAAGC
AGGCCGTTGGCCTCCCGATTGTAGTTGTGCCTGGACTTGGGCGCAATCTA
TTCTCGGTCCCGGCGGCGACTGCGCGAGGCGTCATCACTACGTTCACG
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Coding sequence (CDS) from alignment at S-dermatodea_contig87920:176..523-

>mRNA_S-dermatodea_contig87920.16929.1 ID=mRNA_S-dermatodea_contig87920.16929.1|Name=mRNA_S-dermatodea_contig87920.16929.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at S-dermatodea_contig87920:176..523- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCGGAAATCAAGAACGTTGTCAACAACCACTCCATCATCACCGGCAA
TTCTCTGCCGGTACTTGTGGACAGCGGGGCGTCAGAGCACTACTTTGACG
ATCTGCTGGCTCCTGGACTCCGGGACAAGTTGTCCGACTACACAGTCCTA
CAGGTTCCACGAACAATCACCACTGCGGGCAACCACGAGCTAAAGGGCGT
CGCCACCGGCGTCCTCAGCGGAACCATCGCCGATTCGCAGGGTGTGAAGC
AGGCCGTTGGCCTCCCGATTGTAGTTGTGCCTGGACTTGGGCGCAATCTA
TTCTCGGTCCCGGCGGCGACTGCGCGAGGCGTCATCACTACGTTCACGAT
GGCGGAAATCAAGAACGTTGTCAACAACCACTCCATCATCACCGGCAATT
CTCTGCCGGTACTTGTGGACAGCGGGGCGTCAGAGCACTACTTTGACGAT
CTGCTGGCTCCTGGACTCCGGGACAAGTTGTCCGACTACACAGTCCTACA
GGTTCCACGAACAATCACCACTGCGGGCAACCACGAGCTAAAGGGCGTCG
CCACCGGCGTCCTCAGCGGAACCATCGCCGATTCGCAGGGTGTGAAGCAG
GCCGTTGGCCTCCCGATTGTAGTTGTGCCTGGACTTGGGCGCAATCTATT
CTCGGTCCCGGCGGCGACTGCGCGAGGCGTCATCACTACGTTCACG
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