mRNA_S-dermatodea_contig8761.16913.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8761.16913.1
Unique NamemRNA_S-dermatodea_contig8761.16913.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig8761.16913.1 vs. uniprot
Match: A0A6H5K2R2_9PHAE (Helitron_like_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2R2_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 4.870e-38
Identity = 67/124 (54.03%), Postives = 86/124 (69.35%), Query Frame = 2
Query:    2 VMSRMNRYVANVPGTDAFWLTARKKLEDAYAQLDSLTTFDTYSMADLHWRDLHRLMPGF--DAENPPDRRERTRSLIANPALANWWFNERLKLWQKFFLGPRMANRIWSWARIEWQSRGSAHCH 367
            +M+ M+RY AN+PGTD FW   + +LE+A  QL SLT F TYS AD HW DLHRLMPG+  D ++ P  ++RT+ LI NP LA+WWF +RL+ W+  FLG  M ++ W W R EWQSR S H H
Sbjct:  385 IMTHMSRYTANLPGTDGFWQKEQGRLENAVDQLQSLTVFTTYSAADHHWYDLHRLMPGYKEDDDDKPTPQQRTQWLIDNPHLADWWFWQRLQEWKGVFLGRDMGDQRWQWDRAEWQSRASLHVH 508          
BLAST of mRNA_S-dermatodea_contig8761.16913.1 vs. uniprot
Match: A0A6H5K692_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K692_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 1.970e-32
Identity = 66/123 (53.66%), Postives = 75/123 (60.98%), Query Frame = 2
Query:   20 RYVANVPGTDAFWLTARKKLEDAYAQLDSLTTFDTYSMADLHWRDLHRLMPGFDAENPPDR-------RERTRSLIANPALANWWFNERLKLWQKFFLGPRMANRIWSWARIEWQSRGSAHCH 367
            RYVANVPGTD +W+  + KLED+  QL SLTTF TYS A+ HW DL RLMP    E  P          ERTR LI NP LA+WW  ER+    + FLG  MA+  W W R EWQSR S H H
Sbjct:  493 RYVANVPGTDGYWMRWQGKLEDSLNQLQSLTTFTTYSAANHHWYDLFRLMPASGPEPAPGEGGLIRPVAERTRPLIDNPHLADWWIWERMHKLDEIFLGNAMADASWFWMRAEWQSRASLHIH 615          
BLAST of mRNA_S-dermatodea_contig8761.16913.1 vs. uniprot
Match: A0A3M7P2T5_BRAPC (ATP-dependent DNA helicase pif1 (Fragment) n=1 Tax=Brachionus plicatilis TaxID=10195 RepID=A0A3M7P2T5_BRAPC)

HSP 1 Score: 97.4 bits (241), Expect = 9.110e-22
Identity = 48/122 (39.34%), Postives = 70/122 (57.38%), Query Frame = 2
Query:    2 VMSRMNRYVANVPGTDAFWLTARKKLEDAYAQLDSLTTFDTYSMADLHWRDLHRLMPGFDAENPPDRRERTRSLIANPALANWWFNERLKLWQKFFLGPRMANRIWSWARIEWQSRGSAHCH 367
            ++ RM  Y AN+ G++A+W   R +LE  + Q    T F T+S AD HW DLHRL+PG  + +P   ++R  +++ NP L +W+F  RL  + K      + +  W W R EWQSR S H H
Sbjct:   81 LLRRMTPYSANITGSNAYWFQRRSELESTFEQKKPATVFFTFSYADNHWEDLHRLLPGGFSTDP---KKRYLNVLNNPHLVDWYFGIRLNEFLKIVFDG-ILDCEWRWHRYEWQSRSSIHAH 198          
BLAST of mRNA_S-dermatodea_contig8761.16913.1 vs. uniprot
Match: A0A3M7RLM2_BRAPC (ATP-dependent DNA helicase PIF1 n=1 Tax=Brachionus plicatilis TaxID=10195 RepID=A0A3M7RLM2_BRAPC)

HSP 1 Score: 96.3 bits (238), Expect = 6.240e-21
Identity = 49/123 (39.84%), Postives = 72/123 (58.54%), Query Frame = 2
Query:    2 VMSRMNRYVANVPGTDAFWLTARKKLEDAYAQLDSLTTFDTYSMADLHWRDLHRLMPGFDAENPPDRRERTRSLIANPALANWWFNERL-KLWQKFFLGPRMANRIWSWARIEWQSRGSAHCH 367
            ++ RM  Y AN+ G++A+W   R +LE  + Q    T F T+S AD HW DLHRL+PG  +++P   + R ++++ NP L +W+F+ RL +  Q  F G       W W R EWQ+R S H H
Sbjct:  140 ILKRMTPYSANITGSNAYWYQRRCELETTFEQKKPATIFFTFSYADNHWIDLHRLLPGGYSDDP---KVRYKNVLRNPHLVDWYFSVRLNEFLQIVFDGTLQCE--WRWHRYEWQARSSIHAH 257          
BLAST of mRNA_S-dermatodea_contig8761.16913.1 vs. uniprot
Match: UPI001069F53B (uncharacterized protein LOC114526533 n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI001069F53B)

HSP 1 Score: 95.5 bits (236), Expect = 1.890e-20
Identity = 45/121 (37.19%), Postives = 77/121 (63.64%), Query Frame = 2
Query:    5 MSRMNRYVANVPGTDAFWLTARKKLEDAYAQLDSLTTFDTYSMADLHWRDLHRLMPGFDAENPPDRRERTRSLIANPALANWWFNERLKLWQKFFLGPRMANRIWSWARIEWQSRGSAHCH 367
            +S+++RYVAN+ G++A+W   R+ L+     + + T F T+S AD+HW +LHRL+   +  +     ER +++I NP L +W+F +R++ + K +L   +  + W W R E+Q+RGS HCH
Sbjct:  307 ISKISRYVANIAGSNAYWYKVREDLKAIVTTVGTPTFFFTFSSADMHWPELHRLLGNRNGTSE----ERLQAVIKNPHLVDWFFTQRVESFIKHWLYKTLDAK-WHWYRFEYQARGSIHCH 422          
BLAST of mRNA_S-dermatodea_contig8761.16913.1 vs. uniprot
Match: A0A3M7T2K9_BRAPC (ATP-dependent DNA helicase pif1 n=1 Tax=Brachionus plicatilis TaxID=10195 RepID=A0A3M7T2K9_BRAPC)

HSP 1 Score: 88.6 bits (218), Expect = 1.810e-19
Identity = 47/121 (38.84%), Postives = 68/121 (56.20%), Query Frame = 2
Query:    5 MSRMNRYVANVPGTDAFWLTARKKLEDAYAQLDSLTTFDTYSMADLHWRDLHRLMPGFDAENPPDRRERTRSLIANPALANWWFNERLKLWQKFFLGPRMANRIWSWARIEWQSRGSAHCH 367
            M RM  Y +N+ G+D++    R +LE  + Q    T F T+S AD HW DLHRLMPG   +   D+ +R ++++ NP L +W+F  RL  + K      + +  W W R EWQSR + H H
Sbjct:    1 MKRMTAYSSNITGSDSY--KRRTELEATFEQKGCATVFFTFSYADNHWHDLHRLMPG---QFTLDKNKRYQNVLNNPHLVDWYFTFRLNEFLKVVFDG-ILDCEWRWHRYEWQSRSTIHAH 115          
BLAST of mRNA_S-dermatodea_contig8761.16913.1 vs. uniprot
Match: A0A397J1K6_9GLOM (Helitron_like_N domain-containing protein n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397J1K6_9GLOM)

HSP 1 Score: 83.6 bits (205), Expect = 2.100e-16
Identity = 47/121 (38.84%), Postives = 66/121 (54.55%), Query Frame = 2
Query:    8 SRMNRYVANVPGTDAFWLTARKKLEDAYAQLDSL-TTFDTYSMADLHWRDLHRLMPGFDAENPPDRRERTRSLIANPALANWWFNERLKLWQKFFLGPRMANRIWSWARIEWQSRGSAHCH 367
            +R+ RY   + G+  FW+  R +L D   QL S    F T+S ADLHW +LH+LMPG +     DR+   ++LI NP +  W+FN+  + +    L      + W W R EWQ RGS H H
Sbjct:    3 NRIMRYGEGLRGSRQFWMARRYELSDIIKQLGSRGIIFFTFSSADLHWPELHKLMPGGNLAVSTDRQ---KNLIDNPHVTAWFFNKCFETFFNNVLKQHWNLKKW-WYRFEWQHRGSVHVH 119          
BLAST of mRNA_S-dermatodea_contig8761.16913.1 vs. uniprot
Match: A0A2Z6QFX4_9GLOM (ATP-dependent DNA helicase n=2 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A2Z6QFX4_9GLOM)

HSP 1 Score: 78.6 bits (192), Expect = 1.690e-14
Identity = 43/123 (34.96%), Postives = 66/123 (53.66%), Query Frame = 2
Query:    2 VMSRMNRYVANVPGTDAFWLTARKKLEDAYAQLDSL-TTFDTYSMADLHWRDLHRLMPGFDAENPPDRRERTRSLIANPALANWWFNERLKLWQKFFLGPRMANRIWSWARIEWQSRGSAHCH 367
            +  R+  +   + G+  FW + R +L D   Q+ S    F T+S ADLHW +LHRLMP  D     D+  + +++I N  +A W+F++R +++    L  +     W W R EWQ RGS H H
Sbjct:  517 IADRIMXFGEGLRGSRQFWNSRRYELTDMIKQIGSQGLIFFTFSAADLHWPELHRLMPPSDNSEASDK-TKLQNIIDNXHIATWFFSKRFEIFFNDVLKEQWDLEDW-WYRFEWQHRGSVHVH 637          
BLAST of mRNA_S-dermatodea_contig8761.16913.1 vs. uniprot
Match: A0A2Z6QJZ3_9GLOM (ATP-dependent DNA helicase n=1 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A2Z6QJZ3_9GLOM)

HSP 1 Score: 76.6 bits (187), Expect = 7.760e-14
Identity = 42/110 (38.18%), Postives = 61/110 (55.45%), Query Frame = 2
Query:   41 GTDAFWLTARKKLEDAYAQLDSL-TTFDTYSMADLHWRDLHRLMPGFDAENPPDRRERTRSLIANPALANWWFNERLKLWQKFFLGPRMANRIWSWARIEWQSRGSAHCH 367
            G+  FW + R +L D   Q+ S    F T+S ADLHW +LHRLMP  D     D+  + +++I N  +A W+F++R +++    L  +     W W R EWQ RGS H H
Sbjct:   23 GSRQFWNSRRYELTDMIKQIGSQGLIFFTFSAADLHWPELHRLMPPSDNSEASDK-TKLQNIIDNLHIATWFFSKRFEIFFNDVLKEQWDLEDW-WYRFEWQHRGSVHVH 130          
BLAST of mRNA_S-dermatodea_contig8761.16913.1 vs. uniprot
Match: A0A2Z6QDE6_9GLOM (Helitron_like_N domain-containing protein n=1 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A2Z6QDE6_9GLOM)

HSP 1 Score: 74.7 bits (182), Expect = 3.500e-13
Identity = 45/120 (37.50%), Postives = 62/120 (51.67%), Query Frame = 2
Query:   11 RMNRYVANVPGTDAFWLTARKKLEDAYAQLDSL-TTFDTYSMADLHWRDLHRLMPGFDAENPPDRRERTRSLIANPALANWWFNERLKLWQKFFLGPRMANRIWSWARIEWQSRGSAHCH 367
            R+ RY  ++ GT  FW+  R +L D   Q+      F T+S AD HW +LHRLMP  D E+   R      +I NP +A W+F +R + +    L  +     W W + EWQ RGS H H
Sbjct:  294 RIMRYRESLQGTRQFWIARRGELLDIIKQIGHRGLIFFTFSAADFHWPNLHRLMP--DDEDAQSR------VINNPHIAAWFFTKRFESFFNNMLKEKWDLEDW-WFQYEWQYRGSVHVH 404          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8761.16913.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A6H5K2R2_9PHAE4.870e-3854.03Helitron_like_N domain-containing protein n=1 Tax=... [more]
A0A6H5K692_9PHAE1.970e-3253.66ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A3M7P2T5_BRAPC9.110e-2239.34ATP-dependent DNA helicase pif1 (Fragment) n=1 Tax... [more]
A0A3M7RLM2_BRAPC6.240e-2139.84ATP-dependent DNA helicase PIF1 n=1 Tax=Brachionus... [more]
UPI001069F53B1.890e-2037.19uncharacterized protein LOC114526533 n=1 Tax=Dendr... [more]
A0A3M7T2K9_BRAPC1.810e-1938.84ATP-dependent DNA helicase pif1 n=1 Tax=Brachionus... [more]
A0A397J1K6_9GLOM2.100e-1638.84Helitron_like_N domain-containing protein n=1 Tax=... [more]
A0A2Z6QFX4_9GLOM1.690e-1434.96ATP-dependent DNA helicase n=2 Tax=Rhizophagus cla... [more]
A0A2Z6QJZ3_9GLOM7.760e-1438.18ATP-dependent DNA helicase n=1 Tax=Rhizophagus cla... [more]
A0A2Z6QDE6_9GLOM3.500e-1337.50Helitron_like_N domain-containing protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8761contigS-dermatodea_contig8761:451..988 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score82.8
Seed ortholog evalue1.2e-13
Seed eggNOG ortholog5507.FOXG_17101P0
KEGG koko:K15255
EggNOG free text desc.Conserved hypothetical protein
EggNOG OGs1FXW4@110618,21AWX@147550,39RYU@33154,3P64X@4751,3QU0F@4890,3TKC2@5125,COG0507@1,KOG0987@2759
EC3.6.4.12
COG Functional cat.D
Best tax levelNectriaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03029,ko03032
Hectar predicted targeting categoryother localisation
Exons2
Model size367
Cds size363
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8761.16913.1prot_S-dermatodea_contig8761.16913.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8761 451..984 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925365.4602602-CDS-S-dermatodea_contig8761:450..6551622925365.4602602-CDS-S-dermatodea_contig8761:450..655Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8761 451..655 -
1694079884.082877-CDS-S-dermatodea_contig8761:450..6551694079884.082877-CDS-S-dermatodea_contig8761:450..655Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8761 451..655 -
1622925365.4699094-CDS-S-dermatodea_contig8761:826..9841622925365.4699094-CDS-S-dermatodea_contig8761:826..984Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8761 827..984 -
1694079884.0940845-CDS-S-dermatodea_contig8761:826..9841694079884.0940845-CDS-S-dermatodea_contig8761:826..984Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8761 827..984 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925365.481369-UTR-S-dermatodea_contig8761:984..9881622925365.481369-UTR-S-dermatodea_contig8761:984..988Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8761 985..988 -
1694079884.1038377-UTR-S-dermatodea_contig8761:984..9881694079884.1038377-UTR-S-dermatodea_contig8761:984..988Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8761 985..988 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8761.16913.1

>prot_S-dermatodea_contig8761.16913.1 ID=prot_S-dermatodea_contig8761.16913.1|Name=mRNA_S-dermatodea_contig8761.16913.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=121bp
MSRMNRYVANVPGTDAFWLTARKKLEDAYAQLDSLTTFDTYSMADLHWRD
LHRLMPGFDAENPPDRRERTRSLIANPALANWWFNERLKLWQKFFLGPRM
ANRIWSWARIEWQSRGSAHCH
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mRNA from alignment at S-dermatodea_contig8761:451..988-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8761.16913.1 ID=mRNA_S-dermatodea_contig8761.16913.1|Name=mRNA_S-dermatodea_contig8761.16913.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=538bp|location=Sequence derived from alignment at S-dermatodea_contig8761:451..988- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGTGATGTCGAGGATGAATCGGTACGTCGCCAACGTCCCCGGGACCGACG CCTTTTGGTTAACTGCACGCAAGAAGCTCGAAGACGCGTATGCACAGCTA GACAGCCTGACGACGTTCGACACGTATAGCATGGCGGACCTCCACTGGAG AGACCTCCACCGGTAAGCTTATTTGTTGTTCATAATAATACCTTCTTTGC TGCGTGGCACCACTGTTTATCGTTCGCAAGGCTGTCTTCGAAATGTAACC GAGCTCAAGTAATGCGTCGCATGACCACCCTTTTACGAACCATATCCGCT ACCCTACTGCATCATCGGGCGGCCATCGTATAGGTTGATGCCGGGTTTTG ACGCAGAGAACCCGCCTGATCGCCGGGAGCGGACGCGTTCCCTCATCGCT AACCCGGCCCTCGCGAACTGGTGGTTCAACGAACGCTTAAAGCTCTGGCA GAAGTTCTTCTTGGGCCCACGGATGGCGAACAGGATTTGGAGCTGGGCCC GGATCGAATGGCAGAGCAGGGGTAGCGCTCACTGCCAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig8761:451..988-

>mRNA_S-dermatodea_contig8761.16913.1 ID=mRNA_S-dermatodea_contig8761.16913.1|Name=mRNA_S-dermatodea_contig8761.16913.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=726bp|location=Sequence derived from alignment at S-dermatodea_contig8761:451..988- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTCGAGGATGAATCGGTACGTCGCCAACGTCCCCGGGACCGACGCCTT
TTGGTTAACTGCACGCAAGAAGCTCGAAGACGCGTATGCACAGCTAGACA
GCCTGACGACGTTCGACACGTATAGCATGGCGGACCTCCACTGGAGAGAC
CTCCACCGATGTCGAGGATGAATCGGTACGTCGCCAACGTCCCCGGGACC
GACGCCTTTTGGTTAACTGCACGCAAGAAGCTCGAAGACGCGTATGCACA
GCTAGACAGCCTGACGACGTTCGACACGTATAGCATGGCGGACCTCCACT
GGAGAGACCTCCACCGGTTGATGCCGGGTTTTGACGCAGAGAACCCGCCT
GATCGCCGGGAGCGGACGCGTTCCCTCATCGCTAACCCGGCCCTCGCGAA
CTGGTGGTTCAACGAACGCTTAAAGCTCTGGCAGAAGTTCTTCTTGGGCC
CACGGATGGCGAACAGGATTTGGAGCTGGGCCCGGATCGAATGGCAGAGC
AGGGGTAGCGCTCACTGCCACGTTGATGCCGGGTTTTGACGCAGAGAACC
CGCCTGATCGCCGGGAGCGGACGCGTTCCCTCATCGCTAACCCGGCCCTC
GCGAACTGGTGGTTCAACGAACGCTTAAAGCTCTGGCAGAAGTTCTTCTT
GGGCCCACGGATGGCGAACAGGATTTGGAGCTGGGCCCGGATCGAATGGC
AGAGCAGGGGTAGCGCTCACTGCCAC
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