mRNA_S-dermatodea_contig87580.16905.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig87580.16905.1
Unique NamemRNA_S-dermatodea_contig87580.16905.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig87580.16905.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig87580contigS-dermatodea_contig87580:2..654 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size653
Cds size651
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925364.8147914-CDS-S-dermatodea_contig87580:1..6521622925364.8147914-CDS-S-dermatodea_contig87580:1..652Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig87580 2..652 +
1694079883.665137-CDS-S-dermatodea_contig87580:1..6521694079883.665137-CDS-S-dermatodea_contig87580:1..652Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig87580 2..652 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig87580.16905.1prot_S-dermatodea_contig87580.16905.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig87580 2..652 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig87580.16905.1

>prot_S-dermatodea_contig87580.16905.1 ID=prot_S-dermatodea_contig87580.16905.1|Name=mRNA_S-dermatodea_contig87580.16905.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=217bp
AGSDAVGTRRSSAVAARAPEAIERDTRELGPSESVDTRAREEKKSRHKRE
LRCWEHPAAGIFFILRGGWFFYEVITENAVRAATRLIAFPNAEMLNMFVS
LQAIDVDKCAPPVPIGSAPVTMMTAAEDHFETFVDILAEVILLGLEEVES
ECVARAKRLIADFRLLAKEVSLYMRFWRIELKEYFDEARKMLLEAMNEGC
SDFFAEAASIGMREQRR
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mRNA from alignment at S-dermatodea_contig87580:2..654+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig87580.16905.1 ID=mRNA_S-dermatodea_contig87580.16905.1|Name=mRNA_S-dermatodea_contig87580.16905.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=653bp|location=Sequence derived from alignment at S-dermatodea_contig87580:2..654+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCAGGTTCTGATGCGGTAGGCACGAGGCGCAGTAGTGCGGTAGCGGCGAG
AGCGCCCGAGGCGATTGAGCGAGACACGCGCGAGTTAGGCCCGAGCGAGT
CGGTAGACACGAGGGCTCGGGAGGAGAAAAAAAGTAGACACAAGCGCGAA
CTGCGCTGCTGGGAACACCCAGCGGCCGGCATTTTTTTCATTCTGCGTGG
AGGTTGGTTTTTTTACGAAGTCATCACTGAAAACGCGGTGCGCGCGGCGA
CCAGGTTGATCGCTTTCCCGAATGCCGAAATGCTCAACATGTTTGTATCT
CTACAAGCGATCGATGTAGATAAATGCGCCCCCCCCGTCCCCATCGGGTC
GGCACCCGTTACCATGATGACGGCCGCCGAAGACCACTTCGAGACTTTCG
TGGATATTCTTGCAGAGGTCATTTTGCTGGGGCTGGAGGAGGTGGAGTCG
GAGTGTGTTGCCCGCGCAAAGAGACTGATCGCGGATTTTCGTTTGCTTGC
AAAGGAAGTGTCGCTGTACATGCGTTTTTGGCGTATCGAGCTCAAAGAGT
ACTTTGACGAAGCGCGAAAAATGCTGCTCGAAGCCATGAATGAGGGATGC
AGCGATTTTTTTGCCGAGGCCGCGAGCATAGGCATGCGCGAGCAGCGTAG
ATC
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Coding sequence (CDS) from alignment at S-dermatodea_contig87580:2..654+

>mRNA_S-dermatodea_contig87580.16905.1 ID=mRNA_S-dermatodea_contig87580.16905.1|Name=mRNA_S-dermatodea_contig87580.16905.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1302bp|location=Sequence derived from alignment at S-dermatodea_contig87580:2..654+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCAGGTTCTGATGCGGTAGGCACGAGGCGCAGTAGTGCGGTAGCGGCGAG
AGCGCCCGAGGCGATTGAGCGAGACACGCGCGAGTTAGGCCCGAGCGAGT
CGGTAGACACGAGGGCTCGGGAGGAGAAAAAAAGTAGACACAAGCGCGAA
CTGCGCTGCTGGGAACACCCAGCGGCCGGCATTTTTTTCATTCTGCGTGG
AGGTTGGTTTTTTTACGAAGTCATCACTGAAAACGCGGTGCGCGCGGCGA
CCAGGTTGATCGCTTTCCCGAATGCCGAAATGCTCAACATGTTTGTATCT
CTACAAGCGATCGATGTAGATAAATGCGCCCCCCCCGTCCCCATCGGGTC
GGCACCCGTTACCATGATGACGGCCGCCGAAGACCACTTCGAGACTTTCG
TGGATATTCTTGCAGAGGTCATTTTGCTGGGGCTGGAGGAGGTGGAGTCG
GAGTGTGTTGCCCGCGCAAAGAGACTGATCGCGGATTTTCGTTTGCTTGC
AAAGGAAGTGTCGCTGTACATGCGTTTTTGGCGTATCGAGCTCAAAGAGT
ACTTTGACGAAGCGCGAAAAATGCTGCTCGAAGCCATGAATGAGGGATGC
AGCGATTTTTTTGCCGAGGCCGCGAGCATAGGCATGCGCGAGCAGCGTAG
AGCAGGTTCTGATGCGGTAGGCACGAGGCGCAGTAGTGCGGTAGCGGCGA
GAGCGCCCGAGGCGATTGAGCGAGACACGCGCGAGTTAGGCCCGAGCGAG
TCGGTAGACACGAGGGCTCGGGAGGAGAAAAAAAGTAGACACAAGCGCGA
ACTGCGCTGCTGGGAACACCCAGCGGCCGGCATTTTTTTCATTCTGCGTG
GAGGTTGGTTTTTTTACGAAGTCATCACTGAAAACGCGGTGCGCGCGGCG
ACCAGGTTGATCGCTTTCCCGAATGCCGAAATGCTCAACATGTTTGTATC
TCTACAAGCGATCGATGTAGATAAATGCGCCCCCCCCGTCCCCATCGGGT
CGGCACCCGTTACCATGATGACGGCCGCCGAAGACCACTTCGAGACTTTC
GTGGATATTCTTGCAGAGGTCATTTTGCTGGGGCTGGAGGAGGTGGAGTC
GGAGTGTGTTGCCCGCGCAAAGAGACTGATCGCGGATTTTCGTTTGCTTG
CAAAGGAAGTGTCGCTGTACATGCGTTTTTGGCGTATCGAGCTCAAAGAG
TACTTTGACGAAGCGCGAAAAATGCTGCTCGAAGCCATGAATGAGGGATG
CAGCGATTTTTTTGCCGAGGCCGCGAGCATAGGCATGCGCGAGCAGCGTA
GA
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