mRNA_S-dermatodea_contig8756.16901.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8756.16901.1
Unique NamemRNA_S-dermatodea_contig8756.16901.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8756.16901.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8756contigS-dermatodea_contig8756:72..604 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size533
Cds size315
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8756.16901.1prot_S-dermatodea_contig8756.16901.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8756 172..486 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925364.513451-UTR-S-dermatodea_contig8756:71..1711622925364.513451-UTR-S-dermatodea_contig8756:71..171Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8756 72..171 +
1694079883.468583-UTR-S-dermatodea_contig8756:71..1711694079883.468583-UTR-S-dermatodea_contig8756:71..171Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8756 72..171 +
1622925364.5372424-UTR-S-dermatodea_contig8756:486..6041622925364.5372424-UTR-S-dermatodea_contig8756:486..604Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8756 487..604 +
1694079883.4850917-UTR-S-dermatodea_contig8756:486..6041694079883.4850917-UTR-S-dermatodea_contig8756:486..604Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8756 487..604 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925364.5252905-CDS-S-dermatodea_contig8756:171..4861622925364.5252905-CDS-S-dermatodea_contig8756:171..486Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8756 172..486 +
1694079883.4769483-CDS-S-dermatodea_contig8756:171..4861694079883.4769483-CDS-S-dermatodea_contig8756:171..486Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8756 172..486 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8756.16901.1

>prot_S-dermatodea_contig8756.16901.1 ID=prot_S-dermatodea_contig8756.16901.1|Name=mRNA_S-dermatodea_contig8756.16901.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=105bp
MAVGKRHPVASHRNTRNDDSRGKKERRVYLLACCWRWRNVANGRLVEARP
VVQGTSNSDIFGLSDYVFHRRNHASAVTMHACPLLVQYVYTRSDVFIANA
HVYF*
back to top

mRNA from alignment at S-dermatodea_contig8756:72..604+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8756.16901.1 ID=mRNA_S-dermatodea_contig8756.16901.1|Name=mRNA_S-dermatodea_contig8756.16901.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=533bp|location=Sequence derived from alignment at S-dermatodea_contig8756:72..604+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ACCCTTTCAGCGAATGATTCCGTTTTTCGGGGCCATCTGCCCGTGCCGAA
AGTTATGGCGAACCTATGTCCAAGTGCGGCTACTCTTCGCTTATATATAA
ATGGCAGTGGGAAAGCGGCACCCTGTAGCCTCTCACCGCAACACTCGTAA
TGATGATTCGAGGGGAAAAAAGGAACGCAGGGTCTACCTTTTGGCTTGCT
GCTGGCGCTGGCGTAACGTCGCAAACGGTCGCCTCGTCGAAGCGCGCCCG
GTTGTGCAAGGCACATCCAACAGCGACATATTTGGGCTTAGCGACTACGT
TTTTCACAGAAGAAACCACGCGAGCGCCGTCACCATGCATGCATGCCCAC
TACTTGTACAGTATGTATACACCCGGAGCGATGTTTTCATTGCAAACGCA
CACGTTTACTTTTGACCTACAAATACAAATCACACCACACCGCGCAAAAT
AAAACATCATTCCAGCACTTACCCCGCAAAACCAAAAAAATAATGATACG
CAAACCCTCAGCCAGTTTACAGTAAAGCGGCGA
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig8756:72..604+

>mRNA_S-dermatodea_contig8756.16901.1 ID=mRNA_S-dermatodea_contig8756.16901.1|Name=mRNA_S-dermatodea_contig8756.16901.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=630bp|location=Sequence derived from alignment at S-dermatodea_contig8756:72..604+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCAGTGGGAAAGCGGCACCCTGTAGCCTCTCACCGCAACACTCGTAA
TGATGATTCGAGGGGAAAAAAGGAACGCAGGGTCTACCTTTTGGCTTGCT
GCTGGCGCTGGCGTAACGTCGCAAACGGTCGCCTCGTCGAAGCGCGCCCG
GTTGTGCAAGGCACATCCAACAGCGACATATTTGGGCTTAGCGACTACGT
TTTTCACAGAAGAAACCACGCGAGCGCCGTCACCATGCATGCATGCCCAC
TACTTGTACAGTATGTATACACCCGGAGCGATGTTTTCATTGCAAACGCA
CACGTTTACTTTTGAATGGCAGTGGGAAAGCGGCACCCTGTAGCCTCTCA
CCGCAACACTCGTAATGATGATTCGAGGGGAAAAAAGGAACGCAGGGTCT
ACCTTTTGGCTTGCTGCTGGCGCTGGCGTAACGTCGCAAACGGTCGCCTC
GTCGAAGCGCGCCCGGTTGTGCAAGGCACATCCAACAGCGACATATTTGG
GCTTAGCGACTACGTTTTTCACAGAAGAAACCACGCGAGCGCCGTCACCA
TGCATGCATGCCCACTACTTGTACAGTATGTATACACCCGGAGCGATGTT
TTCATTGCAAACGCACACGTTTACTTTTGA
back to top