mRNA_S-dermatodea_contig875.16895.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig875.16895.1
Unique NamemRNA_S-dermatodea_contig875.16895.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig875.16895.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig875contigS-dermatodea_contig875:21916..22304 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size389
Cds size369
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925363.7218912-UTR-S-dermatodea_contig875:21915..219351622925363.7218912-UTR-S-dermatodea_contig875:21915..21935Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig875 21916..21935 +
1694079882.9105182-UTR-S-dermatodea_contig875:21915..219351694079882.9105182-UTR-S-dermatodea_contig875:21915..21935Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig875 21916..21935 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925363.7324586-CDS-S-dermatodea_contig875:21935..223041622925363.7324586-CDS-S-dermatodea_contig875:21935..22304Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig875 21936..22304 +
1694079882.9220536-CDS-S-dermatodea_contig875:21935..223041694079882.9220536-CDS-S-dermatodea_contig875:21935..22304Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig875 21936..22304 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig875.16895.1prot_S-dermatodea_contig875.16895.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig875 21936..22304 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig875.16895.1

>prot_S-dermatodea_contig875.16895.1 ID=prot_S-dermatodea_contig875.16895.1|Name=mRNA_S-dermatodea_contig875.16895.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=123bp
MVTPHILPRISLELAALSAALSPISTASWRRDKGRQSALPRCLGSLLIAY
KLPPHWCDRRVPCTACREPIIERSLGVPPRIPPGISVADYRWEVTDDVSI
VEQLDLPVSPSNCLHNSLYIVN*
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mRNA from alignment at S-dermatodea_contig875:21916..22304+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig875.16895.1 ID=mRNA_S-dermatodea_contig875.16895.1|Name=mRNA_S-dermatodea_contig875.16895.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=389bp|location=Sequence derived from alignment at S-dermatodea_contig875:21916..22304+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGGCCACAGTCTGTTTGGGTATGGTTACACCCCATATTCTACCTCGCATC
TCTCTGGAGCTTGCAGCGCTTTCCGCCGCTCTTTCGCCGATTTCTACTGC
TTCTTGGCGTCGAGATAAGGGTAGACAGTCTGCCTTGCCTCGATGCCTTG
GCTCTCTTCTTATTGCCTATAAATTACCACCGCATTGGTGTGATCGGCGT
GTCCCATGCACCGCCTGCCGTGAGCCGATTATCGAACGCTCCCTCGGCGT
ACCGCCACGCATACCGCCGGGGATTTCGGTTGCGGATTACAGATGGGAGG
TGACGGACGACGTCTCCATTGTGGAACAGCTCGATTTACCGGTGAGTCCG
TCCAACTGTCTCCACAACTCACTGTATATCGTCAACTAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig875:21916..22304+

>mRNA_S-dermatodea_contig875.16895.1 ID=mRNA_S-dermatodea_contig875.16895.1|Name=mRNA_S-dermatodea_contig875.16895.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=738bp|location=Sequence derived from alignment at S-dermatodea_contig875:21916..22304+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGTTACACCCCATATTCTACCTCGCATCTCTCTGGAGCTTGCAGCGCT
TTCCGCCGCTCTTTCGCCGATTTCTACTGCTTCTTGGCGTCGAGATAAGG
GTAGACAGTCTGCCTTGCCTCGATGCCTTGGCTCTCTTCTTATTGCCTAT
AAATTACCACCGCATTGGTGTGATCGGCGTGTCCCATGCACCGCCTGCCG
TGAGCCGATTATCGAACGCTCCCTCGGCGTACCGCCACGCATACCGCCGG
GGATTTCGGTTGCGGATTACAGATGGGAGGTGACGGACGACGTCTCCATT
GTGGAACAGCTCGATTTACCGGTGAGTCCGTCCAACTGTCTCCACAACTC
ACTGTATATCGTCAACTAGATGGTTACACCCCATATTCTACCTCGCATCT
CTCTGGAGCTTGCAGCGCTTTCCGCCGCTCTTTCGCCGATTTCTACTGCT
TCTTGGCGTCGAGATAAGGGTAGACAGTCTGCCTTGCCTCGATGCCTTGG
CTCTCTTCTTATTGCCTATAAATTACCACCGCATTGGTGTGATCGGCGTG
TCCCATGCACCGCCTGCCGTGAGCCGATTATCGAACGCTCCCTCGGCGTA
CCGCCACGCATACCGCCGGGGATTTCGGTTGCGGATTACAGATGGGAGGT
GACGGACGACGTCTCCATTGTGGAACAGCTCGATTTACCGGTGAGTCCGT
CCAACTGTCTCCACAACTCACTGTATATCGTCAACTAG
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