mRNA_S-dermatodea_contig8743.16889.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8743.16889.1
Unique NamemRNA_S-dermatodea_contig8743.16889.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8743.16889.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8743contigS-dermatodea_contig8743:3129..4590 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size504
Cds size486
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8743.16889.1prot_S-dermatodea_contig8743.16889.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8743 3145..4590 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925363.4976716-UTR-S-dermatodea_contig8743:3128..31441622925363.4976716-UTR-S-dermatodea_contig8743:3128..3144Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8743 3129..3144 +
1694079882.7675757-UTR-S-dermatodea_contig8743:3128..31441694079882.7675757-UTR-S-dermatodea_contig8743:3128..3144Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8743 3129..3144 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925363.5133367-CDS-S-dermatodea_contig8743:3144..35551622925363.5133367-CDS-S-dermatodea_contig8743:3144..3555Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8743 3145..3555 +
1694079882.7776728-CDS-S-dermatodea_contig8743:3144..35551694079882.7776728-CDS-S-dermatodea_contig8743:3144..3555Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8743 3145..3555 +
1622925363.5253885-CDS-S-dermatodea_contig8743:4515..45901622925363.5253885-CDS-S-dermatodea_contig8743:4515..4590Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8743 4516..4590 +
1694079882.7948022-CDS-S-dermatodea_contig8743:4515..45901694079882.7948022-CDS-S-dermatodea_contig8743:4515..4590Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8743 4516..4590 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8743.16889.1

>prot_S-dermatodea_contig8743.16889.1 ID=prot_S-dermatodea_contig8743.16889.1|Name=mRNA_S-dermatodea_contig8743.16889.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=162bp
MPAARARWLLASRCIAAALLLESASSFQQRVCVVRDDTTHRNAAQPNVAH
ARAALASRQQPFVAPGGAVLRCGSTSWFPVPAVGHRPVRRARLPHLVALS
AAPPATEDLEVEAEGVQQLPAAAAVGVVIEAKAAEGQTSAPGTAKPPHHG
GDFLFEQKLESV
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mRNA from alignment at S-dermatodea_contig8743:3129..4590+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8743.16889.1 ID=mRNA_S-dermatodea_contig8743.16889.1|Name=mRNA_S-dermatodea_contig8743.16889.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1462bp|location=Sequence derived from alignment at S-dermatodea_contig8743:3129..4590+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCCTGCTCGAACACCGATGCCCGCCGCGAGAGCGAGGTGGCTGCTGGCCT
CCCGATGCATCGCCGCGGCTCTCCTCCTAGAGTCGGCTTCCTCTTTCCAG
CAGAGGGTGTGCGTTGTTCGCGATGACACGACTCATCGCAACGCGGCGCA
ACCAAACGTGGCACATGCACGGGCAGCACTTGCATCACGACAGCAGCCCT
TCGTAGCCCCTGGCGGCGCTGTCCTCCGCTGCGGCAGCACCTCGTGGTTT
CCTGTTCCGGCTGTGGGACACCGGCCGGTGCGACGGGCAAGGCTGCCGCA
CCTCGTTGCTCTGTCGGCAGCACCACCGGCGACCGAAGACTTGGAGGTGG
AGGCGGAAGGGGTCCAGCAGTTGCCAGCGGCGGCGGCGGTTGGTGTTGTT
ATTGAGGCGAAGGCAGCAGAGGGGCAGGTACAGTGCGGGTGCATGTACGA
GTATCGCGCTTGGAAGGCATGCTTAGGAGGTAGAGGTGGAGGTTGTAAGT
GGAATCGTGCCTGTAGGAGAGGCGTGTGGGTGGGAAGGCCTTGGCTCTTA
TTGTTGCAGCGGCAGACTCGGGAGTAGGAGTACGAGTAATTGTGTACAGC
CGAGAGCATGATGATGAACATGCGTTCTGAGGCACAACCTGGGGTGCAGC
TTCGAAGCACATGACAGCGGAGCTACAGCAGTATCAAACATGGGGCAACG
TCGTACTGTACTACAAGTACATTGTGCATGTGTAGACTGCTGAAGTAGCT
ACGTAACCCCGACTGGCTGCAGCACAAGCACCGGCCAGGTTTTGGCAATT
TGGTGGAAATAGTGATGATCTGGTACATATCGCTGCCACAGCTCTGCTTG
TATACATCAGCCAAGACAACAGCGTAGCAGGTTACAGAGTACCAGCTGGT
GACTGTAGACAGCTGCATTCTGTTACAAGTACAGAGCTTGTGTCACAGCA
GCATTCTGTTTACAATAGAGCTTGCATGGTATGTAGACAGCAGTAGTAGC
GTTCTGTGCTCACAACAGTAGTGCAGTCTTGTACTTATAGTTCCTGTTCC
CTTGACACTTGACACGAGCTGCTTGACACCTGCTGCAGTCCTTTCTGTTC
CGCTCAGGTGGAAAAAACGTGTGTACGATACTACAGTACTCTGTATGCAT
AATATATGAGACAAACATTCCGTACAAGTACTTACTTCGTTCTGTATCGC
CGCCAATCACACGTGGCAAGCTAACACGCGCACGCACCAGCACAGGCAGC
GTGCACCTCCTCCGCTCTTCTGCTCCTCTACGGCTACCATACGACATACA
TCACCACCGCCAGACGTGCCACAACCTTTTATCACCTCTCTCTGGAACAT
ATTTTCCGACCCCTTTATTCCTCGTCGCGCTGATCAGACCTCCGCTCCCG
GCACCGCCAAGCCGCCCCACCACGGCGGAGACTTTCTGTTCGAGCAGAAG
CTCGAGTCCGTC
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Coding sequence (CDS) from alignment at S-dermatodea_contig8743:3129..4590+

>mRNA_S-dermatodea_contig8743.16889.1 ID=mRNA_S-dermatodea_contig8743.16889.1|Name=mRNA_S-dermatodea_contig8743.16889.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=972bp|location=Sequence derived from alignment at S-dermatodea_contig8743:3129..4590+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCCCGCCGCGAGAGCGAGGTGGCTGCTGGCCTCCCGATGCATCGCCGC
GGCTCTCCTCCTAGAGTCGGCTTCCTCTTTCCAGCAGAGGGTGTGCGTTG
TTCGCGATGACACGACTCATCGCAACGCGGCGCAACCAAACGTGGCACAT
GCACGGGCAGCACTTGCATCACGACAGCAGCCCTTCGTAGCCCCTGGCGG
CGCTGTCCTCCGCTGCGGCAGCACCTCGTGGTTTCCTGTTCCGGCTGTGG
GACACCGGCCGGTGCGACGGGCAAGGCTGCCGCACCTCGTTGCTCTGTCG
GCAGCACCACCGGCGACCGAAGACTTGGAGGTGGAGGCGGAAGGGGTCCA
GCAGTTGCCAGCGGCGGCGGCGGTTGGTGTTGTTATTGAGGCGAAGGCAG
CAGAGGGGCAGATGCCCGCCGCGAGAGCGAGGTGGCTGCTGGCCTCCCGA
TGCATCGCCGCGGCTCTCCTCCTAGAGTCGGCTTCCTCTTTCCAGCAGAG
GGTGTGCGTTGTTCGCGATGACACGACTCATCGCAACGCGGCGCAACCAA
ACGTGGCACATGCACGGGCAGCACTTGCATCACGACAGCAGCCCTTCGTA
GCCCCTGGCGGCGCTGTCCTCCGCTGCGGCAGCACCTCGTGGTTTCCTGT
TCCGGCTGTGGGACACCGGCCGGTGCGACGGGCAAGGCTGCCGCACCTCG
TTGCTCTGTCGGCAGCACCACCGGCGACCGAAGACTTGGAGGTGGAGGCG
GAAGGGGTCCAGCAGTTGCCAGCGGCGGCGGCGGTTGGTGTTGTTATTGA
GGCGAAGGCAGCAGAGGGGCAGACCTCCGCTCCCGGCACCGCCAAGCCGC
CCCACCACGGCGGAGACTTTCTGTTCGAGCAGAAGCTCGAGTCCGTCACC
TCCGCTCCCGGCACCGCCAAGCCGCCCCACCACGGCGGAGACTTTCTGTT
CGAGCAGAAGCTCGAGTCCGTC
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