mRNA_S-dermatodea_contig8738.16883.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8738.16883.1
Unique NamemRNA_S-dermatodea_contig8738.16883.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8738.16883.1 vs. uniprot
Match: A0A454XPC7_OSTTA (Uncharacterized protein n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A454XPC7_OSTTA)

HSP 1 Score: 86.3 bits (212), Expect = 7.760e-15
Identity = 53/130 (40.77%), Postives = 70/130 (53.85%), Query Frame = 3 
Query:   93 LSVSPHVDETLGITSTDSFLAHVVNVLYVSVPRNMSGGRLEMYGYTWLRATLFPYLLSLLSTQQLDSLLPPDVSVEPVENLLVSFRGDAIHRVEGFQAGGGGIEESSVEGRARSRGDRHRVSVVLEQYSV 482
            ++V  H+D+T+GI S   F+AH V+VLYVSVP +M GG+LE          LFPY             + P  +VEP ENL+ +FRGDA HRV  +                R+R  R RVS+VLEQY +
Sbjct:  193 MAVGLHLDDTVGIFSKHEFVAHQVSVLYVSVPEDMEGGQLE----------LFPY-----GNGSTPENVEPTEAVEPKENLMATFRGDAFHRVRAY----------------RTRSKRERVSLVLEQYHI 291
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BLAST of mRNA_S-dermatodea_contig8738.16883.1 vs. uniprot
Match: A0A5J4YPS6_PORPP (Uncharacterized protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YPS6_PORPP)

HSP 1 Score: 84.7 bits (208), Expect = 2.290e-14
Identity = 59/142 (41.55%), Postives = 75/142 (52.82%), Query Frame = 3 
Query:   93 LSVSPHVDETLGI-TSTDSFLAHVVNVLYVSVPRNMSGGRLEMYGYTWLRATLFPYLLSLLSTQQLDSLLPPDVSVEPVENLLVSFRGDAIHRVEGFQAGGGGIEESSVEGRARSRGDRHRVSVVLEQYSVPLLSYGLTTDY 515
            +SV  HVD T+GI      FLAHVV+VLYVS+PR+M GG L ++ Y    + + P + S             D  + P EN  VSFRGDA H V GFQ     I E         + DR R+S+V+EQY +P L Y  T  Y
Sbjct:  177 VSVGIHVDNTVGIHVPVLRFLAHVVDVLYVSIPRDMQGGSLVIWNYGSGPSIVAPTIDS------------ADREIVPRENHRVSFRGDAFHTVRGFQ-----IPEDVP------KQDRLRISLVIEQYKIPSLFYRRTDTY 295
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BLAST of mRNA_S-dermatodea_contig8738.16883.1 vs. uniprot
Match: A0A7S2GZD6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GZD6_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 2.210e-8
Identity = 56/177 (31.64%), Postives = 72/177 (40.68%), Query Frame = 3 
Query:   81 GPLPLSVSPHVDETLGI---TSTDSFLAHVVNVLYVSVPRNMSGGRLEMYGYTWLRATLFPYLLSLLSTQQ------------------------LDSLLPPDVSVEPVENLLVSFRGDAIHRVEGFQAGGGGIEESSVEGRARSRGDRHRVSVVLEQYSVPLLSYGLTTDYDLSAG 530
            GP    V  HVD+++ I   T      AH V+V Y S+P +M GG LE+  Y   R      L    ST                            SLL     V P E  LV+FRGDA HRV   ++               S  D  R+S+VLEQY +  + YG T  Y+ +AG
Sbjct:  106 GPNSSGVGWHVDQSVAIIPDTWAPMHTAHTVSVWYASIPSDMDGGELEIVAYDGGRDGKIKQLGPFNSTPNEGEEISDGCHGLLKRNKPVGLTPNSSSLLTTRARVIPREGALVTFRGDAFHRVLPLRS---------------SHVDTSRISIVLEQYRIDPMHYGKTLPYEFTAG 267
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BLAST of mRNA_S-dermatodea_contig8738.16883.1 vs. uniprot
Match: A0A8J9RLE1_9CHLO (Uncharacterized protein n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RLE1_9CHLO)

HSP 1 Score: 57.0 bits (136), Expect = 3.290e-5
Identity = 52/169 (30.77%), Postives = 79/169 (46.75%), Query Frame = 3 
Query:   12 MPGEDAAAVAGTFDGGRGGEKAEGPLPLSVSPHVDETLGITSTD----SFLAHVVNVLYVSVPRNMSGGRLEMYGYTWLRATLFPYLLSLLSTQQLDSLLPPDVSVEPVENLLVSFRGDAIHRVEGFQAGGGGIEESSVEGRARSRGDRHRVSVVLEQYSVP-LLSYGL 503
            +P  +A ++   F   RG  +A    P    PH+D  L I+       +  ++  +VLY+SVP++M GG L ++    L  TL                  P   + P++NLLVSFRGDA HRV+ F +                  +  RVS+ LEQY +P LL++G+
Sbjct:  154 LPRANAWSLNVVFSQPRGVRRAGHSGPQD--PHIDN-LRISGPAGRACTVASYQTSVLYLSVPQDMDGGNLTIWEQQGLGGTLGE----------------PKDFIHPMDNLLVSFRGDAPHRVDEFHS------------------EAMRVSLTLEQYIIPDLLAWGV 285
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8738.16883.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A454XPC7_OSTTA7.760e-1540.77Uncharacterized protein n=2 Tax=Ostreococcus tauri... [more]
A0A5J4YPS6_PORPP2.290e-1441.55Uncharacterized protein n=1 Tax=Porphyridium purpu... [more]
A0A7S2GZD6_9STRA2.210e-831.64Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A8J9RLE1_9CHLO3.290e-530.77Uncharacterized protein n=1 Tax=Coccomyxa sp. Obi ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8738contigS-dermatodea_contig8738:3142..7081 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.8
Seed ortholog evalue5.8e-15
Seed eggNOG ortholog70448.A0A096P8I2
EggNOG OGs2D3F1@1,2SRBK@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size1687
Cds size561
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8738.16883.1prot_S-dermatodea_contig8738.16883.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8738 4257..7070 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925363.0317419-UTR-S-dermatodea_contig8738:3141..42561622925363.0317419-UTR-S-dermatodea_contig8738:3141..4256Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8738 3142..4256 -
1694079882.4090312-UTR-S-dermatodea_contig8738:3141..42561694079882.4090312-UTR-S-dermatodea_contig8738:3141..4256Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8738 3142..4256 -
1622925363.071763-UTR-S-dermatodea_contig8738:7070..70811622925363.071763-UTR-S-dermatodea_contig8738:7070..7081Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8738 7071..7081 -
1694079882.4508164-UTR-S-dermatodea_contig8738:7070..70811694079882.4508164-UTR-S-dermatodea_contig8738:7070..7081Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8738 7071..7081 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925363.0454283-CDS-S-dermatodea_contig8738:4256..46671622925363.0454283-CDS-S-dermatodea_contig8738:4256..4667Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8738 4257..4667 -
1694079882.426597-CDS-S-dermatodea_contig8738:4256..46671694079882.426597-CDS-S-dermatodea_contig8738:4256..4667Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8738 4257..4667 -
1622925363.0574574-CDS-S-dermatodea_contig8738:6920..70701622925363.0574574-CDS-S-dermatodea_contig8738:6920..7070Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8738 6921..7070 -
1694079882.4373326-CDS-S-dermatodea_contig8738:6920..70701694079882.4373326-CDS-S-dermatodea_contig8738:6920..7070Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8738 6921..7070 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8738.16883.1

>prot_S-dermatodea_contig8738.16883.1 ID=prot_S-dermatodea_contig8738.16883.1|Name=mRNA_S-dermatodea_contig8738.16883.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=187bp
MPGEDAAAVAGTFDGGRGGEKAEGPLPLSVSPHVDETLGITSTDSFLAHV
VNVLYVSVPRNMSGGRLEMYGYTWLRATLFPYLLSLLSTQQLDSLLPPDV
SVEPVENLLVSFRGDAIHRVEGFQAGGGGIEESSVEGRARSRGDRHRVSV
VLEQYSVPLLSYGLTTDYDLSAGSLHKKGTKGYGGN*
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mRNA from alignment at S-dermatodea_contig8738:3142..7081-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8738.16883.1 ID=mRNA_S-dermatodea_contig8738.16883.1|Name=mRNA_S-dermatodea_contig8738.16883.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3940bp|location=Sequence derived from alignment at S-dermatodea_contig8738:3142..7081- (Saccorhiza dermatodea SderLu1190fm monoicous)
TGTTGGTCTGTATGCCGGGAGAGGATGCGGCAGCGGTGGCGGGCACTTTC
GACGGGGGGAGAGGGGGGGAGAAGGCCGAGGGACCTCTTCCGCTTTCAGT
TTCGCCGCACGTGGACGAGACGCTGGGCATCACGTCAACGGATTCTTTCT
TGGCGCACGTGGTGAGAGAGAAGATGTAGGGTTTCCATGGTCTAAGAGGC
GGCGATATTTGGGGGCTTGGTTAAATACCCGTACAAAATAATAGGCAGGT
TGTGCCGTGGCGAGAGTCCCCCCCTCTCTGAACATGAAATAGTTGTATCT
TGGCGATGCAGAGCGTGGGCCGAGGGTATGGTTTCCCGTCGTCGAGTCCA
GCTACGCTCTCGCTTATACGTCGATGTCCATAGCCTCTACGTGGCGAGGG
TATTTTATAGCTCGCGGTAAAATCGGACTCAATTTGCACTCGATGACGTT
GAGGAGGGGTGGTGCAAAGGTATTCGCCGGGTGTACAAATAACAAAATAC
GGTTTAGTTTTAGCGTTGACGTGTCTGTTACGTTTTTGTTGTGTACTGGG
AGGTGCCAGCGCTTGATGGCCGTATGGGCACGAAAAACGAGGCTAGCGAC
TGCAATCACCCGAAACGATTGTTCCGCAAACCCTCGAACGAGTGGGACTG
TCAGCCTTCTATAGTGGAAGACATACTAGAGCGGCTTCCCATCTTTAGCA
TGTTGAACACGGTCTAGCAACCTCACATTGTCCAGCCAAACCACCGGTGA
ATGCTTTACCTTGCCGACAGCGAACCGGGTCGGAAAAAAAACTTACGTTA
CCTTTCCAGTGCCGATGGAGAAGACCACGTTGTCGACCGCTTCCCGGTTT
AGGAAATGAATATGGGAACCGAACCAGTTCCGGCGATGGAAACCAAGGTT
TACACCGCCACCGCGAACCGTACTCGATTTTGTTTCGAAAGCAGTCAAGA
AAAGCGCACCTGTTTCGGTCATGATCGAATGTACACATTAAGGAAGGAGA
TATATGCGTGTGGTGGTTGCCGGCAACGCAAGAAGCGCCGAGACTAAAGA
TATTATGCCACAGCCTTACCGAACCGAAGACGGCCCGGATCGAAATTGTT
CCAAGAGGCTCAAGGCATGTCCGGTACGTACGTAAATGGTAGTCCACAGA
AGACTTGACAAATTCACTCGTGTGGATCATAACACCTGGCTGTTGTTTGT
TCGCGGCAGCAAAATCAGTCCCCACGTTGTAGACCGCAAACCGGCTCTGA
AAGCAACAATTAAACCAAACCGAGAAGCAATCCAAATATAGGGGCCGTGA
ACAAATCGGCATTTGGTTTTTGGCTGTCGCGCTGGAGGTAGAAGGCGTTT
TTCCATTTGCTGTGCGCGCGCCTAATTTGACCAGCCCCTCTCAAATACCG
TTCCGAGTCTACCGGGTTCAACTAGTATGTTCCGGGATCGCATGATTAGT
ATTTTTGCTGGCAGGCCGACAACCCCTCCCCCCCTATCTTTGAATTGCTT
CGAGCCGAACAGAACCGAACCGAACAGAACCGAACCGAACCGAACCGAAC
CGAACCGAACCGAACCGAACCGAACCGAACCGAACCGAACGGAACCGAAC
CGAACCGCGAGGCAAACCCAGAGGTAATAAGTTAGTTAGTCACGACGTCA
TCGGAGATAGAGACACAATTAAACCTTGAACTTATTAGCACGATGCCATA
TAGCAGCGACGAAGAAGCGGCAGGAGAACATAAGAGAGCCGCTCTTGTCC
CAGTCCCAGTACAGTCGTTACTCGTAAAGTCAGAACAATACTCTATAGCA
AATCCCCGGACTGCCATCACATCATCAAAGACTGTACCGATACGACCACA
GAATGCGTGGTGGGCGGCAGAGTGGAAATCCACTCAAAGGTGACAGACGA
AACACGCCCGGGGGGGGCGGGAGGGACCTTCAAACAACGGCCGCCTTCAA
CGGTGCATGTTAGTGTAGGACTGCATTGTTAATAATCGTATGCGCTGGAG
ACATTGACGAGTGCCGCCCCGTTCGAAAATGCGTGGTCATGAGAAACTTG
AAAATTGCAGCTGGATGAAAAATCGCGAACCTTTCGGTCAATCAGAGCCA
ACCGCGGACGGGATCTTTGGCCAGCTTCTTCCGGAACAATAGTGGTTTTC
TCGCCTTTGGATATGGATATGCGACAGTAGGTATCATACTTCATCTGAAG
CTCCGATCACGCATAAATAATGTGATTCATTTTAGCTCCCCTCATTGTAT
TCACCCGATCACGCAGTACTATGATTCCTAAACCATTTTCAAGACCAACA
GTGAACCGTCCTATCAAAATGTAATATAAATAGTGGCCAACACCGATCAT
AAACACACGCGCCTGTTGCTTACGCTCTTCTCCCTGACACTGTGTCGTTC
CCGCGCGCTCGAAGGTAAACGTGCTGTATGTATCAGTACCGAGGAATATG
TCCGGGGGCCGGCTAGAGATGTACGGTTACACCTGGCTGCGGGCGACGCT
CTTCCCCTACTTGCTGTCCCTTCTGTCTACGCAGCAGCTCGATAGCCTCC
TCCCTCCAGACGTCTCCGTAGAACCCGTGGAAAACCTCTTGGTATCCTTT
CGTGGGGATGCAATCCATCGGGTGGAGGGTTTCCAGGCTGGGGGTGGGGG
GATTGAAGAGTCCTCCGTGGAGGGCCGCGCGCGGTCGAGGGGTGATCGGC
ATCGCGTGAGCGTGGTGTTGGAGCAGTACAGCGTGCCTCTCTTGTCGTAC
GGCCTCACCACGGATTATGACCTCTCGGCCGGGTCGCTGCATAAGAAGGG
CACCAAGGGTTACGGAGGGAACTGAGGCGTGTGGTTGTTTTGAGTTTTTG
CAGCGTGTGAAGTGCGGCGTATGTATTAGGCGGGCCGTACTGCGGCGGTC
CAACGTATACAAACGATTGGTTCGCAGCGCATGCAGTCTACCCCCCCCAC
GCGTAGTCAACGATCTAACAGCAAAGACATGCACAGCATGAGTGCGTCCC
CGCCACCAACCCACGCCTTGAAAAGGCAGGCCCTCCAAGCGCTTCTCGTT
CGGACAGTTTGTGTTCTTCCCGTGTCTGGGTCCCTCATCCACCAGGGTCT
CGTTGCTCGCAAGAAACACGAACTGCCCCACGGGCAGGAGGAAACGACCG
CCTGTGGCCTGCCCGTAGATCAGGTCGCTTTTCTCACGAACGGCGAGACC
CTGGTGGATGGGAGACGCAGCCACGGTAAGAACACAGCCTGTCCGAACGA
GAAGCGCTTGGAGGGCCTGCAGTGAAGATTGCGGCAAACGGTCCACGGAA
ACATCGGTTGTGTGAGTTCGGCGGACGAGCGCGGAGCATCGTCGAATAAT
TTCCTCCGGCCTTCGTTGGAAGCTCAGAGTCGTGAGCGCCAAGACACACC
CTGACGAATAAGGGTACGCGAAGGATGAGGCACCAAGATGGCCTCCCCCT
TCTTTTTCCGCAGCGGCTGCAACCTTGTGACCCCCTTCCCTGGTTGACCA
CCTCGCCGACGCTTGCTTCGCCGGCATTCTGTTGTTCTTGGTCGTAGTGG
TTCTCGCGAGTACAACCGCTCTGTTTCCTTTGTGTGTTGGTGCGGTTGGG
GGGAGTACTTGGTCGGTAGCCAAAGCATACAAGGTGGGGGCTTGCGCAGC
AACCTGCAAGGTCGTGGTAAATAGTCGCTTTGCTGGAGGATGTTTCACGG
AATGATAGCGAAGATCCTCAAAAGTGCTATTGTATCAGCGGTATGCAGTA
TACTGTATGTAGTAGTAGTTGTACTTCGAGGATTTTTTTTCAATCTTTCT
AAAAGTCTCTCCTTTTTTGGCGTGTGCCTCCAGCCTCCAGTGAGCTCGTC
GGCACTCGCTTTCTGTGTTACAGTGAGCTGGTCGGTGCGAGTAGCCTGGC
GAACGCCTCTCTTGAGTCAATCATATATATTTTGAGCTCT
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Coding sequence (CDS) from alignment at S-dermatodea_contig8738:3142..7081-

>mRNA_S-dermatodea_contig8738.16883.1 ID=mRNA_S-dermatodea_contig8738.16883.1|Name=mRNA_S-dermatodea_contig8738.16883.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1122bp|location=Sequence derived from alignment at S-dermatodea_contig8738:3142..7081- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCCGGGAGAGGATGCGGCAGCGGTGGCGGGCACTTTCGACGGGGGGAG
AGGGGGGGAGAAGGCCGAGGGACCTCTTCCGCTTTCAGTTTCGCCGCACG
TGGACGAGACGCTGGGCATCACGTCAACGGATTCTTTCTTGGCGCACGTG
ATGCCGGGAGAGGATGCGGCAGCGGTGGCGGGCACTTTCGACGGGGGGAG
AGGGGGGGAGAAGGCCGAGGGACCTCTTCCGCTTTCAGTTTCGCCGCACG
TGGACGAGACGCTGGGCATCACGTCAACGGATTCTTTCTTGGCGCACGTG
GTAAACGTGCTGTATGTATCAGTACCGAGGAATATGTCCGGGGGCCGGCT
AGAGATGTACGGTTACACCTGGCTGCGGGCGACGCTCTTCCCCTACTTGC
TGTCCCTTCTGTCTACGCAGCAGCTCGATAGCCTCCTCCCTCCAGACGTC
TCCGTAGAACCCGTGGAAAACCTCTTGGTATCCTTTCGTGGGGATGCAAT
CCATCGGGTGGAGGGTTTCCAGGCTGGGGGTGGGGGGATTGAAGAGTCCT
CCGTGGAGGGCCGCGCGCGGTCGAGGGGTGATCGGCATCGCGTGAGCGTG
GTGTTGGAGCAGTACAGCGTGCCTCTCTTGTCGTACGGCCTCACCACGGA
TTATGACCTCTCGGCCGGGTCGCTGCATAAGAAGGGCACCAAGGGTTACG
GAGGGAACTGAGTAAACGTGCTGTATGTATCAGTACCGAGGAATATGTCC
GGGGGCCGGCTAGAGATGTACGGTTACACCTGGCTGCGGGCGACGCTCTT
CCCCTACTTGCTGTCCCTTCTGTCTACGCAGCAGCTCGATAGCCTCCTCC
CTCCAGACGTCTCCGTAGAACCCGTGGAAAACCTCTTGGTATCCTTTCGT
GGGGATGCAATCCATCGGGTGGAGGGTTTCCAGGCTGGGGGTGGGGGGAT
TGAAGAGTCCTCCGTGGAGGGCCGCGCGCGGTCGAGGGGTGATCGGCATC
GCGTGAGCGTGGTGTTGGAGCAGTACAGCGTGCCTCTCTTGTCGTACGGC
CTCACCACGGATTATGACCTCTCGGCCGGGTCGCTGCATAAGAAGGGCAC
CAAGGGTTACGGAGGGAACTGA
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