mRNA_S-dermatodea_contig8735.16877.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8735.16877.1
Unique NamemRNA_S-dermatodea_contig8735.16877.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig8735.16877.1 vs. uniprot
Match: D8LKX0_ECTSI (GpcrRhopsn4 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKX0_ECTSI)

HSP 1 Score: 324 bits (831), Expect = 2.550e-102
Identity = 161/183 (87.98%), Postives = 175/183 (95.63%), Query Frame = 3
Query:    3 EVLHWGGQLVVSYVLVGLAYGWTLSSRAVQKYVPDDKNIVYLMAGSLGFVHLMFVILGRLSDDHHAKSHALDSAPAYFLVLVRLVLLAIFLLGAVKTFEAEASAQRRGFIARLVVLGTLWFAAMPVLVLVAMICAEYIQEPVVSVGGLLTQSLGLAVLSWLFLTRNEYYKMSSLAHTGMLPTN 551
            EVLHWGGQL+VSYVLVGLAYGWTLSSRAVQKYVPDDK+IVYL+AG LGF+HLMFVILGR+SDDHHAKSH+LDSAPAYFLVLVRL LL +FLLGA+KTFEAE ++ RRGFI RLVVLG+LWFAAMPVLVLVAMICAEY+QEPVV+VG LL QSLGL+VLSWLFLTRNEYYKMSSLAHTGMLPTN
Sbjct:  244 EVLHWGGQLLVSYVLVGLAYGWTLSSRAVQKYVPDDKSIVYLLAGCLGFLHLMFVILGRMSDDHHAKSHSLDSAPAYFLVLVRLALLGVFLLGALKTFEAEQNSVRRGFIGRLVVLGSLWFAAMPVLVLVAMICAEYVQEPVVAVGSLLAQSLGLSVLSWLFLTRNEYYKMSSLAHTGMLPTN 426          
BLAST of mRNA_S-dermatodea_contig8735.16877.1 vs. uniprot
Match: A0A7S4CD68_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4CD68_9EUGL)

HSP 1 Score: 109 bits (272), Expect = 7.100e-22
Identity = 68/196 (34.69%), Postives = 105/196 (53.57%), Query Frame = 3
Query:    3 EVLHWGGQLVVSYVLVGLAYGWTLSSR------AVQKYV----------PDDKNIVYLMAGSLGFVHLMFVILGRLSDDHHAKSHALDSAPAYFLVLVRLVLLAIFLLGAVKTFEAEASAQRRGFIARLVVLGTLWFAAMPVLVLVAMICAEYIQEPVVSVGGLLTQSLGLAVLSWLFLTRNEYYKMSSLAHTGML 542
            ++L    +L++S+VL+ +A+GWTL++       A Q  +          P D    +L+  S+ FV ++  ILGR  +D   + H  + AP Y L+ +R+ L   F LG + T      A   GF+ RL +LGT WF A PVLV+       Y +  VV+ G +  QS  L +  ++FL+R+EYYK+SSL+  G L
Sbjct:  248 DLLQGISELIISFVLICMAFGWTLTAPVSLIAGARQSGIMGGLAEIFGRPADLG-AFLVFASILFVQVILQILGRQYEDDFTQFHDYEHAPGYTLMAMRVFLCLAFWLGTMTTIRGSRDANVAGFLGRLTLLGTTWFLAFPVLVVCTAFLPPYNRHSVVTSGAITMQSFALCLFLYMFLSRSEYYKISSLSKMGTL 442          
BLAST of mRNA_S-dermatodea_contig8735.16877.1 vs. uniprot
Match: S5CS41_EUGGR (G-protein-coupled-receptor n=1 Tax=Euglena gracilis TaxID=3039 RepID=S5CS41_EUGGR)

HSP 1 Score: 96.3 bits (238), Expect = 1.620e-17
Identity = 61/192 (31.77%), Postives = 97/192 (50.52%), Query Frame = 3
Query:    3 EVLHWGGQLVVSYVLVGLAYGWTLSSRA---VQKYVPDDKNIVYLMAGSLGFVHLMFVI---------LGRLSDDHHAKSHALDSAPAYFLVLVRLVLLAIFLLGAVKTFEAEASAQRRGFIARLVVLGTLWFAAMPVLVLVAMICAEYIQEPVVSVGGLLTQSLGLAVLSWLFLTRNEYYKMSSLAHTGML 542
            ++L    +L++S+VL+ +A+GWTLSS          P     ++      G   + F I         LGR  +D   + H  +  P Y L+ +R++    F +G + T  +  +A    F+ RL  +GT WF A P+LV+     A Y +  VV+ G ++ QS  LA+   LFL+ +EYYK+SSL+  G L
Sbjct:  260 DMLQGLSELLISFVLICMAFGWTLSSPMSLITGARSPGGLAAIFSQPADAGAALVFFSIFLLQTVLQYLGRQYEDDFTQFHDYEHNPGYGLLALRVLSCVAFWIGTMGTIRSSRNADVASFLGRLTFIGTAWFLAFPILVISTSFMAPYNRHAVVAGGSIVLQSAALALFLKLFLSHSEYYKISSLSKMGTL 451          
BLAST of mRNA_S-dermatodea_contig8735.16877.1 vs. uniprot
Match: A0A7R9SVE3_9CHLO (Hypothetical protein n=1 Tax=Polyblepharides amylifera TaxID=1486889 RepID=A0A7R9SVE3_9CHLO)

HSP 1 Score: 87.0 bits (214), Expect = 1.180e-14
Identity = 60/202 (29.70%), Postives = 105/202 (51.98%), Query Frame = 3
Query:   24 QLVVSYVLVGLAYGWTLSSRAVQKYVP----------DDKNIVYLMA--GSLGFVHLMFVILGRLSDDHHAKSHALDSAPAYFLVLVRLVLLAIFLLGAVKTFEAE----------------ASAQRRGFIARLVVLGTLWFAAMPVLVLVAMICAE-YIQEPVVSVGGLLTQSLGLAVLSWLFLTRNEYYKMSSLAHTGML 542
            +L++ ++L+ LA+GWTL  +  +  VP             + +  MA  G++    ++  +LGR  +D   + H  +  P Y L+ +R+ L A+FL+G + T +                  A+     F+ +L+V+G++WF A PVLV+ A    E Y + PVV+ G ++ QS+ L  +S LFL  + Y K+S+LA+ G +
Sbjct:  199 ELLIEFLLITLAFGWTLMPKG-EASVPLLGRFGLAMSSGSSWIIRMAFFGAIAMSQVVLAMLGRRYEDDFNQFHDFEHPPGYCLMALRVTLCALFLIGGLNTLKRSSGGNVASAGSGSTTPGAAVAVSSFMWKLLVMGSVWFLAFPVLVVCASPFFEPYNRHPVVTGGSIILQSVALGSISTLFLQNSSYLKLSTLANMGTI 399          
BLAST of mRNA_S-dermatodea_contig8735.16877.1 vs. uniprot
Match: A0A813FXL4_POLGL (Hypothetical protein (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813FXL4_POLGL)

HSP 1 Score: 80.9 bits (198), Expect = 3.470e-12
Identity = 53/179 (29.61%), Postives = 97/179 (54.19%), Query Frame = 3
Query:    3 EVLHWGGQLVVSYVLVGLAYGWTLSSRAVQKYVPDDKNIVYLMAGSLGFVHLMFVILGRLSDDHHAKSHALDSAPAYFLVLVRLVLLAIFLLGAVKTFEAEASAQRRGFIARLVVLGTLWFAAMPVLVLVAMICAEYIQEPVVSVGGLLTQSLGLAVLSWLFLTRNEYYKMSSLAHTGM 539
            E+L    Q+  + +L+ +  G+TL    +      + +++  M   +G +H+M V  G++ DD   K H  +    + L+ +RL+L   FL  AV+    +  ++ R F+ +  + G+++F A P + L A + A Y+Q  V+SVG +L Q      L+ LFLTR EY+K+S+L+ + +
Sbjct:  922 EILFMLSQVTQTSLLILIGLGYTLLQSRI-----GELDLMIPMCFMVGVIHIMLVGFGKIKDDAAYKFHENEGPVGWILLTMRLLLYGWFL-WAVQASARDGGSKVRNFLDQFRIAGSIYFLAYPTIFLAAKMFAPYLQHGVMSVGLMLMQGGSNLWLASLFLTRGEYFKVSTLSSSDL 1094          
BLAST of mRNA_S-dermatodea_contig8735.16877.1 vs. uniprot
Match: A0A0V0QHZ3_PSEPJ (GpcrRhopsn4 domain-containing protein n=1 Tax=Pseudocohnilembus persalinus TaxID=266149 RepID=A0A0V0QHZ3_PSEPJ)

HSP 1 Score: 77.8 bits (190), Expect = 1.140e-11
Identity = 47/175 (26.86%), Postives = 98/175 (56.00%), Query Frame = 3
Query:   30 VVSYVLVGLAYGWTLSSRAVQKYVPDDKNIVYLMAGSLGFVHLMFVILGRLSDDHHAKSHALDSAPAYFLVLVRLVLLAIFLLGAVKTFEAEASAQRRGFIARLVVLGTLWFAAMPVLVLVAMICAEYIQEPVVSVGGLLTQSLGLAVLSWLFLTRNEYYKMSSLAHTGMLPTNR 554
            ++S  L+ +++GWT++   +     D  +++  +A  +G + LM + LG+L+D+  +K H  D    Y ++++++ L   F  G +   + +AS + + FI +L   G+L+F A+P+L++++   A Y +  ++++G LL Q+    VL +L  ++   Y   S+   G+LP  R
Sbjct:  235 LLSVFLLLVSWGWTINYMEL-----DSFDVIVPLAILMGIIDLMIMGLGKLTDNSDSKYHLYDGWVGYVILVIQIGLFIYFQFG-LNNIKQKASIKLKSFIQQLSFFGSLYFLAIPILLVISWFFAFYDRNIIITLGTLLIQAAAFIVLIYLNTSQKSAYYKVSMKSQGILPGGR 403          
BLAST of mRNA_S-dermatodea_contig8735.16877.1 vs. uniprot
Match: A0A7S1A1W1_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1A1W1_NOCSC)

HSP 1 Score: 69.3 bits (168), Expect = 6.710e-9
Identity = 49/179 (27.37%), Postives = 96/179 (53.63%), Query Frame = 3
Query:    3 EVLHWGGQLVVSYVLVGLAYGWTLSSRAVQKYVPDDKNIVYLMAGSLGFVHLMFVILGRLSDDHHAKSHALDSAPAYFLVLVRLVLLAIFLLGAVKTFEAEASAQRRGFIARLVVLGTLWFAAMPVLVLVAMICAEYIQEPVVSVGGLLTQSLGLAVLSWLFLTRNEYYKMSSLAHTGM 539
            E+L+   Q++ + +L+ ++ G+TLS   +      + +++  +   +G +HLM V  G+L D+   + H  +    +  +++RL LL I+   AV     E   + R F+ +  + G+++F   P + L A   + + Q  +++VG L+T       L+ LFLTR EY+K+SSL+ + +
Sbjct:  238 EMLYVISQVIQTSILLLISLGYTLSQSKI-----GELDLMIPVCFMIGVLHLMLVGFGKLKDEGSYRYHENEGIMGWLQLVLRL-LLYIWFSWAVGETSKEGGMKLRDFLVKFRIAGSVYFLITPTMFLFARQFSPHTQFFLMAVGTLVTNLASDVWLATLFLTRGEYFKVSSLSSSDL 410          
BLAST of mRNA_S-dermatodea_contig8735.16877.1 vs. uniprot
Match: A0A7S3SL10_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3SL10_9SPIT)

HSP 1 Score: 63.2 bits (152), Expect = 9.770e-9
Identity = 34/83 (40.96%), Postives = 52/83 (62.65%), Query Frame = 3
Query:  288 KTFEAEASAQRRGFIARLVVLGTLWFAAMPVLVLVAMICAEYIQEPVVSVGGLLTQSLGLAVLSWLFLTRNEYYKMSSLAHTG 536
            ++   E   +   F+ RL V G  WF  +P+LVL+A +   Y +  +V+ G +L Q+  LA+LS LFL+ +E+YK+SSLAH G
Sbjct:   13 RSLRLERQPEIASFLRRLFVYGGSWFLCLPLLVLLAAVLPPYRRHQLVAGGSILLQTAALALLSRLFLSSSEFYKISSLAHLG 95          
BLAST of mRNA_S-dermatodea_contig8735.16877.1 vs. uniprot
Match: A0A7S1RV62_ALECA (Hypothetical protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1RV62_ALECA)

HSP 1 Score: 68.6 bits (166), Expect = 1.240e-8
Identity = 49/176 (27.84%), Postives = 93/176 (52.84%), Query Frame = 3
Query:    3 EVLHWGGQLVVSYVLVGLAYGWTLSSRAVQKYVPDDKNIVYLMAGSLGFVHLMFVILGRLSDDHHAKSHALDSAPAYFLVLVRLVLLAIFLLGAVKTFEAEASAQRRGFI-ARLVVLGTLWFAAMPVLVLVAMICAEYIQEPVVSVGGLLTQSLGLAVLSWLFLTRNEYYKMSSLA 527
            E+     Q++ + +L+ +A G+TL    +      + +++  +   +  +H+M V  G+L DD     H  +    + L+++RL LL ++ L AV++  +E   + R F+  +   +G+L+F + P + LV    A Y+Q  V++VG    Q+     L   FLTR EY+K+S+L+
Sbjct:  265 EIFFILSQVIQTSLLILIALGYTLLQSCI-----GELDLMIPVCFMVAVIHVMLVGFGKLKDDSAYAFHENEGILGWILLVLRL-LLYVWFLWAVQSSASEGGTRLRSFLLGQFRAVGSLYFLSYPAIFLVTKCFAPYLQHGVMTVGLEAMQAASSVWLCMNFLTRGEYFKVSTLS 434          
BLAST of mRNA_S-dermatodea_contig8735.16877.1 vs. uniprot
Match: A0A7J6NEV4_PEROL (AAA domain-containing protein n=5 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6NEV4_PEROL)

HSP 1 Score: 67.4 bits (163), Expect = 5.070e-8
Identity = 50/184 (27.17%), Postives = 99/184 (53.80%), Query Frame = 3
Query:    3 EVLHWGGQLVVSYVLVGLAYGWTLSSRAVQKYVPDDKNIVYLMAGSLGFVHLMFVILGRLSDDHHAKSHALDSAPAYFLVLVRLVLLAIFLLGAVKTFEAEASAQRRGFIARLVVLGTLWFAAMPVLVLVAMICAEYIQEPVVSVGGLLTQSLGLAVLSWL---FLTRNEYYKMSSLAHTGMLP 545
            ++L  G +++V+ +L+ +A G+TL    +      D +IV  +   +  +H++ V  G++ DD   K +  +    Y L ++RL LLA FL  A+     +AS + + F+ +   +G L+F + P+L++   +   + +  V+ +G     ++ L V  WL   FLTR +Y+++S+L ++  LP
Sbjct:  196 QMLSVGDEVIVTSLLILIASGYTLLQSDL-----GDLDIVIPIVFMVAIIHILIVGFGKVKDDASYKFYENEGVAGYLLSVMRLCLLAWFL-WAINRTGKQASPKLKYFLNKFSAVGILYFLSYPMLIISTDLWPPHYRYKVMLIGDF---AVKLGVFMWLTTLFLTRGDYFQVSTL-NSSFLP 369          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8735.16877.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D8LKX0_ECTSI2.550e-10287.98GpcrRhopsn4 domain-containing protein n=2 Tax=Ecto... [more]
A0A7S4CD68_9EUGL7.100e-2234.69Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
S5CS41_EUGGR1.620e-1731.77G-protein-coupled-receptor n=1 Tax=Euglena gracili... [more]
A0A7R9SVE3_9CHLO1.180e-1429.70Hypothetical protein n=1 Tax=Polyblepharides amyli... [more]
A0A813FXL4_POLGL3.470e-1229.61Hypothetical protein (Fragment) n=1 Tax=Polarella ... [more]
A0A0V0QHZ3_PSEPJ1.140e-1126.86GpcrRhopsn4 domain-containing protein n=1 Tax=Pseu... [more]
A0A7S1A1W1_NOCSC6.710e-927.37Hypothetical protein n=1 Tax=Noctiluca scintillans... [more]
A0A7S3SL10_9SPIT9.770e-940.96Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
A0A7S1RV62_ALECA1.240e-827.84Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A7J6NEV4_PEROL5.070e-827.17AAA domain-containing protein n=5 Tax=Perkinsus ol... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8735contigS-dermatodea_contig8735:3891..7272 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score241.1
Seed ortholog evalue3.2e-61
Seed eggNOG ortholog2880.D8LKX0
Preferred nameGPR180
EggNOG free text desc.response to pheromone
EggNOG OGsKOG4290@1,KOG4290@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Exons4
Model size1673
Cds size435
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8735.16877.1prot_S-dermatodea_contig8735.16877.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8735 4356..6162 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925362.7130933-UTR-S-dermatodea_contig8735:3890..40031622925362.7130933-UTR-S-dermatodea_contig8735:3890..4003Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8735 3891..4003 +
1694079882.1955996-UTR-S-dermatodea_contig8735:3890..40031694079882.1955996-UTR-S-dermatodea_contig8735:3890..4003Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8735 3891..4003 +
1622925362.7246456-UTR-S-dermatodea_contig8735:4340..43551622925362.7246456-UTR-S-dermatodea_contig8735:4340..4355Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8735 4341..4355 +
1694079882.2091541-UTR-S-dermatodea_contig8735:4340..43551694079882.2091541-UTR-S-dermatodea_contig8735:4340..4355Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8735 4341..4355 +
1622925362.7709935-UTR-S-dermatodea_contig8735:6162..72721622925362.7709935-UTR-S-dermatodea_contig8735:6162..7272Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8735 6163..7272 +
1694079882.2706933-UTR-S-dermatodea_contig8735:6162..72721694079882.2706933-UTR-S-dermatodea_contig8735:6162..7272Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8735 6163..7272 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925362.7354736-CDS-S-dermatodea_contig8735:4355..44051622925362.7354736-CDS-S-dermatodea_contig8735:4355..4405Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8735 4356..4405 +
1694079882.225457-CDS-S-dermatodea_contig8735:4355..44051694079882.225457-CDS-S-dermatodea_contig8735:4355..4405Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8735 4356..4405 +
1622925362.7471523-CDS-S-dermatodea_contig8735:5240..54871622925362.7471523-CDS-S-dermatodea_contig8735:5240..5487Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8735 5241..5487 +
1694079882.2390897-CDS-S-dermatodea_contig8735:5240..54871694079882.2390897-CDS-S-dermatodea_contig8735:5240..5487Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8735 5241..5487 +
1622925362.7603984-CDS-S-dermatodea_contig8735:6024..61621622925362.7603984-CDS-S-dermatodea_contig8735:6024..6162Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8735 6025..6162 +
1694079882.2541747-CDS-S-dermatodea_contig8735:6024..61621694079882.2541747-CDS-S-dermatodea_contig8735:6024..6162Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8735 6025..6162 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8735.16877.1

>prot_S-dermatodea_contig8735.16877.1 ID=prot_S-dermatodea_contig8735.16877.1|Name=mRNA_S-dermatodea_contig8735.16877.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=145bp
MAGSLGFVHLMFVILGRLSDDHHAKSHALDSAPAYFLVLVRLVLLAIFLL
GAVKTFEAEASAQRRGFIARLVVLGTLWFAAMPVLVLVAMICAEYIQEPV
VSVGGLLTQSLGLAVLSWLFLTRNEYYKMSSLAHTGMLPTNRND*
back to top

mRNA from alignment at S-dermatodea_contig8735:3891..7272+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8735.16877.1 ID=mRNA_S-dermatodea_contig8735.16877.1|Name=mRNA_S-dermatodea_contig8735.16877.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3382bp|location=Sequence derived from alignment at S-dermatodea_contig8735:3891..7272+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGGAGGTACTGCACTGGGGGGGGCAGCTGGTGGTGTCCTACGTGCTAGTG GGACTGGCGTACGGGTGGACACTCTCCTCGAGGGCCGTACAAAAGTATGT GCCGGACGATAAGGTGCGTGGTAGCGCTTGTCGCAGTTGCGACGTATTTT CGTGGCGGGGGATGCGTGGTTAGTGCACGCGGCGTCCTTACAAACTTGAT TGCACATATCACATTTGAAAGTAGCCATACCAGGTTTCTCTTTGATGTCG ACATGATGTGTTGGCATCGACGCGGCCGGTTTCCCTTGCTACACGCCGCT TTCATCGGTGAGGACGGCTATCCAGACCGCTAAACGGTTGTACGCAGGAT CATCATCTTTGCACTAGAGTCCCATGGCGCCAGCGCTGCGCCGGCTTATT CGGTCCGTTCATTGCCGCTCGGCCCTACCCACCCTCTGTCGCTGATCCAG AACATCGTGTACCTGATGGCCGGGTCCTTAGGCTTCGTCCACCTCATGTT TGTTATTCTCGGAAGGTGCGTGCTGTCTGCGTTTTCTCGTGGCACTCCCG CGAGAAGGTCGCGCCATCACTCGCCCTTCTAGCGTGGTGTTTCGGTGGTA GTGTTCACCCACAGGGTTCACTCGGCCTAGGACTAACCTAACGCCCAGCG GTGGTTTACTTCGTTTCCAACGCCCGTGGTGCACGACCCGTACAGTAGTA TGATACCTCGTTTTGTACTGGTGCATTATTATGAGAAGCGATCGCGCGTG TACGATCGTATCGTTGAACTTAGCGCCGTCTGATTTTATATCGTTTGATA TTTTTGTCGTTGGATACCGTATGATATGTATCGTGGTGATCACATCGTTG GCAATGCCTACCGGACGATGGCTGCGCCGTTTTCGAGGTCACGTGTACGA TCTTGATGTAATACTGTAGTATTGACTCTTTGCGTGTCTGACCACAAGTC GGGTCGGATTAAGCCGATCGGCGATACGTGTGCAAATCGATCAAATCAAA TATCAGAGGTACATATTAATCAGGAGCAAATGTACCAAACACAGTATACC CAGCACAAAATAACAGAGACAACCTGGCCTGGCCTTTTACAACATGTGCG ATCCATTTTTCGGCCTGAAATGTGAACTAAAAAAGCAAAACAATATTTAC AAGTTGTTCGGGCCAAAAAAAACAAAAAAACGAATACTTGTAAGCAATTT TGAAAAACAAAATGGTCCTGATTGTCGTGTACCTCCCTCCGTACTATTCC CGCGTTACGTGCGCGATTGGAGCCCCCCCTTCTTGGCAGCTGCTCTCGTG CCGACATGGTGCCCCCATTCCCTCTACCGTGCCCCCTACCGTGCCCACAG GTTAAGCGATGACCACCACGCGAAGTCGCACGCGCTGGACTCCGCCCCGG CGTATTTTTTGGTCCTCGTCCGCCTGGTGTTGCTTGCCATTTTCCTGCTC GGTGCCGTGAAGACCTTCGAAGCGGAAGCAAGCGCTCAGAGGAGAGGCTT CATTGCCCGCCTCGTCGTACTGGGCACGTTGTGGTTCGCCGCCATGCCCG TGTTGGTCCTGGTCGCGATGATATGCGCCGAGTACATCCAGGAGCCGGTG AGTTGGCAACGGTCGTGGTGGGATTCGGGATGTCCACCGCCGACGGACGT CTCGGGCGCGTTCAGAAATGTTCGAGTTGACCCCTACTAAGCACGCAACC TCTGTTACGTGGTCGGGATTTTCTTCGTATCAATAGTCGATTTCAGACTT ACATTGGGTGGGCGGGGTCCCCGTGTTTGTGGGGAGTGCTGGCTTAACCA GCTGAACATACACACTGCAATGCCGCAAGACTATTAATAGACAGGAGAAG GAAAGGTGTATGGTGTATGGTGTGGGACAAGGCTCGGTCGTGGGAGAGGA AGCGGCTAAAGGTGGCCTTGGTTTTAGTATGATATAGTTTTACGATAGGG ATTTTCCCCTGCGTCCCTTTTACCACCTGCATCTGCTCGTTCGTTTTCCG TGTGAGCGATAATTGATATTTCCACCTTGGTGACCGCGGCCTGAGTTATA AGGTCAGCTAACGTGGAACTATATAGCGTTCTCTCATGCCAGCTTTTTTT GCTTCTACGCCGCCCGCCGACTGTGGTGATGCAGGTGGTTTCGGTGGGAG GGCTGCTCACCCAGTCGCTCGGTCTCGCAGTGCTCTCATGGCTCTTCCTC ACGCGCAATGAGTACTACAAGATGAGCAGCCTTGCGCACACAGGCATGCT GCCCACCAACAGGAACGATTGAGGGGAGCTGACCACCCTCGGGTTCATGT CTCCCTTGTTTTCAGTAGGCCAGTATTGGCTGTTGTCCGCCTTGAGAAGT TGCAATACTTGCGTGTGCTATGTAAAAGTGTCCTGTGGGTTCGTGATTGG TGAAATAAAACTTGTCTTTTGAAAGGTGAGCAAATATTGTTATTTCTGCG CTTGATGGGGGCATGCTGCAACGAACTAGCCTGAGTTAAACACGAGTGAC GCCAGAAAACGAGCTAAAATAGTGGCAAATGTACCGCTTTTCTTGGACAG TCCGCAAAACCGTGTTTTTATGGAGTATTCATAGCGTCAATCGTTGCCGT CTTCAGCAGTGCGTGTCGCGGGCTATCCGATTCATGATTGGTTTTTACGG GCGGGCAGGGTTTTGCGGTGTAAAACGGGGCGCTTGACTCTGTGCTCGAG GAGATACTGAGGTATTGCCGTTGAAGTTTATTAGTAGTTGTGTGCGTTGT GCCAGGCCGTCCCATGGGTAGCTACAGGCATCCTGAGGGAGAGAAGCCTT TCGCTTGTCGTACAAAATCAGGGCACTGCGTCGATTGTTGTGGAGGGCGG CATTATCCCAAGGCGTCAAGTGTACGTAACATGTGCCGTACCTCGAAGTA GATATATGAAGCCCCCTTTTATATCCCAGGTATCATAGCATAAATCAGTG AGAGGGTGTGGATCTGGAGTGTCTGCGACAGGAGCGTTGCGAGCACCGTG TGTGTAAAACTGTTGGAATAACTTTGGCAGAACCAAAAGCGACTATTATA TACTGGTACAGTATACCTAACAGAGATCAGATGGTCGCGGTGAAGGAGCC AAGGCCGCGATCGGTACATCGGTACGGGTGAACGATATGCTGTCTCGTTG CCTGAACGCACGAGACGCGTCTCGATTCGTCGTGGCCGCGTAGATCTCTG CGATACGTTTATCAGCCGGATTTTTTTTAAATAGTGTAAAGCTATACCAA TTCTGCGAAATTTGAAGTCATCATGCCTTTAGTGTTGACTTTGCACCTCC CGATAGGGACGCATGCTGATATTTACCCACACTCTTCGCCCGCTGAAAAG TAACTAATACAAGTATACAAGTAGCGTTCCCT
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig8735:3891..7272+

>mRNA_S-dermatodea_contig8735.16877.1 ID=mRNA_S-dermatodea_contig8735.16877.1|Name=mRNA_S-dermatodea_contig8735.16877.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=870bp|location=Sequence derived from alignment at S-dermatodea_contig8735:3891..7272+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCCGGGTCCTTAGGCTTCGTCCACCTCATGTTTGTTATTCTCGGAAG
ATGGCCGGGTCCTTAGGCTTCGTCCACCTCATGTTTGTTATTCTCGGAAG
GTTAAGCGATGACCACCACGCGAAGTCGCACGCGCTGGACTCCGCCCCGG
CGTATTTTTTGGTCCTCGTCCGCCTGGTGTTGCTTGCCATTTTCCTGCTC
GGTGCCGTGAAGACCTTCGAAGCGGAAGCAAGCGCTCAGAGGAGAGGCTT
CATTGCCCGCCTCGTCGTACTGGGCACGTTGTGGTTCGCCGCCATGCCCG
TGTTGGTCCTGGTCGCGATGATATGCGCCGAGTACATCCAGGAGCCGGTT
AAGCGATGACCACCACGCGAAGTCGCACGCGCTGGACTCCGCCCCGGCGT
ATTTTTTGGTCCTCGTCCGCCTGGTGTTGCTTGCCATTTTCCTGCTCGGT
GCCGTGAAGACCTTCGAAGCGGAAGCAAGCGCTCAGAGGAGAGGCTTCAT
TGCCCGCCTCGTCGTACTGGGCACGTTGTGGTTCGCCGCCATGCCCGTGT
TGGTCCTGGTCGCGATGATATGCGCCGAGTACATCCAGGAGCCGGTGGTT
TCGGTGGGAGGGCTGCTCACCCAGTCGCTCGGTCTCGCAGTGCTCTCATG
GCTCTTCCTCACGCGCAATGAGTACTACAAGATGAGCAGCCTTGCGCACA
CAGGCATGCTGCCCACCAACAGGAACGATTGAGTGGTTTCGGTGGGAGGG
CTGCTCACCCAGTCGCTCGGTCTCGCAGTGCTCTCATGGCTCTTCCTCAC
GCGCAATGAGTACTACAAGATGAGCAGCCTTGCGCACACAGGCATGCTGC
CCACCAACAGGAACGATTGA
back to top