mRNA_S-dermatodea_contig87287.16872.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig87287.16872.1
Unique NamemRNA_S-dermatodea_contig87287.16872.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig87287.16872.1 vs. uniprot
Match: A0A6H5JK47_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK47_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 8.540e-13
Identity = 42/87 (48.28%), Postives = 52/87 (59.77%), Query Frame = -1 
Query:   61 LTLSAEPRLVEVNLVRRGGSRALAGHSLVDMVSPNNEFAEHEQFVSGGRQVIPLSGTRALALGDIIGIAAAPLLRVALETIHHEISP 321
            ++L  EP LVEVNLVR  G  AL G  LV         +  + FVS G Q IPL+G   L  GD+IG++AAPLLRV +ET+    SP
Sbjct:  548 ISLGPEPALVEVNLVRSSGLPALIGEYLVSFRPEVGTLSSPDAFVSHGLQKIPLAGCAELEPGDVIGVSAAPLLRVPVETLKAASSP 634
[Close]
BLAST of mRNA_S-dermatodea_contig87287.16872.1 vs. uniprot
Match: A0A6H5L323_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L323_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 4.010e-12
Identity = 41/87 (47.13%), Postives = 51/87 (58.62%), Query Frame = -1 
Query:   61 LTLSAEPRLVEVNLVRRGGSRALAGHSLVDMVSPNNEFAEHEQFVSGGRQVIPLSGTRALALGDIIGIAAAPLLRVALETIHHEISP 321
            ++L  EP LVEVNLVR  G  AL G  LV         +  + FVS G Q IPL+G   L  GD+IG++AAPLLRV +E +    SP
Sbjct:  501 ISLGPEPALVEVNLVRSSGLPALIGEYLVSFRPEVGTLSSPDAFVSHGLQKIPLAGCAELEPGDVIGVSAAPLLRVPVEALKAASSP 587
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BLAST of mRNA_S-dermatodea_contig87287.16872.1 vs. uniprot
Match: A0A6H5KMH8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMH8_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 7.430e-12
Identity = 39/81 (48.15%), Postives = 50/81 (61.73%), Query Frame = -1 
Query:   79 LTLSAEPRLVEVNLVRRGGSRALAGHSLVDMVSPNNEFAEHEQFVSGGRQVIPLSGTRALALGDIIGIAAAPLLRVALETI 321
            ++L  EP LVEV+LVR  G  AL G  LV         +  + FVS G Q IPL+G   L  GD+IG++AAPLLRV +ET+
Sbjct:  449 ISLGPEPALVEVDLVRSSGMPALIGEYLVSFNPEVGALSSPDAFVSNGLQRIPLAGCAELEPGDVIGVSAAPLLRVPVETL 529
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BLAST of mRNA_S-dermatodea_contig87287.16872.1 vs. uniprot
Match: A0A6H5KPN8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPN8_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 1.370e-11
Identity = 38/81 (46.91%), Postives = 50/81 (61.73%), Query Frame = -1 
Query:   79 LTLSAEPRLVEVNLVRRGGSRALAGHSLVDMVSPNNEFAEHEQFVSGGRQVIPLSGTRALALGDIIGIAAAPLLRVALETI 321
            ++L  EP LVEV+LVR  G  AL G  LV         +  + FVS G Q IPL+G   L  GD+IG++AAPLLRV++E +
Sbjct:  547 ISLGPEPALVEVDLVRSSGMPALIGEYLVSFKPEVGALSSPDAFVSNGLQGIPLAGCAELEPGDVIGVSAAPLLRVSVENL 627
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BLAST of mRNA_S-dermatodea_contig87287.16872.1 vs. uniprot
Match: A0A6H5K6L2_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L2_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 3.510e-11
Identity = 38/76 (50.00%), Postives = 47/76 (61.84%), Query Frame = -1 
Query:   79 EPRLVEVNLVRRGGSRALAGHSLVDMVSPNNEFAEHEQFVSGGRQVIPLSGTRALALGDIIGIAAAPLLRVALETI 306
            EP LVEV+LVR  G  AL G  LV         +  + FVS G Q IPL+G   L  GD+IG++AAPLLRV +ET+
Sbjct:  427 EPALVEVDLVRSSGMPALIGEYLVSFKPEVGALSSPDAFVSNGLQRIPLAGCAELEPGDVIGVSAAPLLRVPVETL 502
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BLAST of mRNA_S-dermatodea_contig87287.16872.1 vs. uniprot
Match: A0A6H5JVW3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVW3_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 4.830e-11
Identity = 38/80 (47.50%), Postives = 48/80 (60.00%), Query Frame = -1 
Query:   79 TLSAEPRLVEVNLVRRGGSRALAGHSLVDMVSPNNEFAEHEQFVSGGRQVIPLSGTRALALGDIIGIAAAPLLRVALETI 318
            +L  EP LVEV+LVR  G  AL G  LV         +  + FVS G Q IPL+G   L  GD+IG++AAPL RV +ET+
Sbjct:  501 SLGPEPALVEVDLVRSSGMPALIGEYLVSFKPEVGALSSPDAFVSNGLQRIPLAGCAELEPGDVIGVSAAPLTRVPVETL 580
[Close]
BLAST of mRNA_S-dermatodea_contig87287.16872.1 vs. uniprot
Match: A0A6H5L559_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L559_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 1.990e-9
Identity = 36/81 (44.44%), Postives = 48/81 (59.26%), Query Frame = -1 
Query:   79 LTLSAEPRLVEVNLVRRGGSRALAGHSLVDMVSPNNEFAEHEQFVSGGRQVIPLSGTRALALGDIIGIAAAPLLRVALETI 321
            ++L  EP LVE++LVR  G  AL G  LV         +  + FVS G Q IPL+    L  GD+IG++AAP LRV +ET+
Sbjct:  432 ISLGPEPALVEMDLVRSSGMPALIGEYLVSFKPEVGALSSPDAFVSNGLQRIPLAVCAELEPGDVIGVSAAPPLRVPVETL 512
[Close]
BLAST of mRNA_S-dermatodea_contig87287.16872.1 vs. uniprot
Match: A0A6H5KUR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUR5_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 2.870e-5
Identity = 28/60 (46.67%), Postives = 36/60 (60.00%), Query Frame = -1 
Query:   79 ALAGHSLVDMVSPNNEFAEHEQFVSGGRQVIPLSGTRALALGDIIGIAAAPLLRVALETI 258
            AL G  LV         +  + FVS G Q IPL+G   L  GD+IG++AAPLLRV +ET+
Sbjct:    3 ALIGEYLVSFKPEVGALSSPDAFVSNGLQRIPLAGCAELEPGDVIGVSAAPLLRVPVETL 62
[Close]
BLAST of mRNA_S-dermatodea_contig87287.16872.1 vs. uniprot
Match: A0A6H5JI47_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI47_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 2.980e-5
Identity = 28/60 (46.67%), Postives = 36/60 (60.00%), Query Frame = -1 
Query:   79 ALAGHSLVDMVSPNNEFAEHEQFVSGGRQVIPLSGTRALALGDIIGIAAAPLLRVALETI 258
            AL G  LV         +  + FVS G Q IPL+G   L  GD+IG++AAPLLRV +ET+
Sbjct:    3 ALIGEYLVSFKPEVGALSSPDAFVSNGLQRIPLAGCAELEPGDVIGVSAAPLLRVPVETL 62
[Close]
BLAST of mRNA_S-dermatodea_contig87287.16872.1 vs. uniprot
Match: A0A6H5LBU1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBU1_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 3.040e-5
Identity = 28/60 (46.67%), Postives = 36/60 (60.00%), Query Frame = -1 
Query:   79 ALAGHSLVDMVSPNNEFAEHEQFVSGGRQVIPLSGTRALALGDIIGIAAAPLLRVALETI 258
            AL G  LV         +  + FVS G Q IPL+G   L  GD+IG++AAPLLRV +ET+
Sbjct:    3 ALIGEYLVSFKPEVGALSSPDAFVSNGLQRIPLAGCAELEPGDVIGVSAAPLLRVPVETL 62
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig87287.16872.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5JK47_9PHAE8.540e-1348.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L323_9PHAE4.010e-1247.13Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KMH8_9PHAE7.430e-1248.15Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KPN8_9PHAE1.370e-1146.91Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K6L2_9PHAE3.510e-1150.00Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5JVW3_9PHAE4.830e-1147.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L559_9PHAE1.990e-944.44Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KUR5_9PHAE2.870e-546.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JI47_9PHAE2.980e-546.67Reverse transcriptase domain-containing protein n=... [more]
A0A6H5LBU1_9PHAE3.040e-546.67Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig87287contigS-dermatodea_contig87287:286..616 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size331
Cds size330
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925362.2589192-CDS-S-dermatodea_contig87287:285..6151622925362.2589192-CDS-S-dermatodea_contig87287:285..615Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig87287 286..615 +
1694079881.8612053-CDS-S-dermatodea_contig87287:285..6151694079881.8612053-CDS-S-dermatodea_contig87287:285..615Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig87287 286..615 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig87287.16872.1prot_S-dermatodea_contig87287.16872.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig87287 286..615 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig87287.16872.1

>prot_S-dermatodea_contig87287.16872.1 ID=prot_S-dermatodea_contig87287.16872.1|Name=mRNA_S-dermatodea_contig87287.16872.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=110bp
GRRLCTVRRAGDGMNSRIGGGRNFMMNRLESNTEQWGGGDSNYITEGKRT
RTGQGDNLPSSGDKLFMFGEFIIRRNHIYEGMSREGAGATAPDQVHLDQS
RLGRQGQTVR
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mRNA from alignment at S-dermatodea_contig87287:286..616+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig87287.16872.1 ID=mRNA_S-dermatodea_contig87287.16872.1|Name=mRNA_S-dermatodea_contig87287.16872.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=331bp|location=Sequence derived from alignment at S-dermatodea_contig87287:286..616+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCCGGCGGCTGTGCACCGTGAGGCGCGCCGGCGACGGCATGAACAGTCG
CATCGGCGGGGGGAGAAATTTCATGATGAATCGTCTCGAGAGCAACACGG
AGCAGTGGGGCGGCGGCGATTCCAATTATATCACCGAGGGCAAGCGCACG
CGTACCGGACAGGGGGATAACTTGCCTTCCTCCGGAGACAAATTGTTCAT
GTTCGGCGAATTCATTATTCGGCGAAACCATATCTACGAGGGAATGTCCC
GCGAGGGCGCGGGAGCCACCGCGCCGGACCAGGTTCACCTCGACCAGTCG
AGGCTCGGCAGACAGGGTCAAACAGTCAGGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig87287:286..616+

>mRNA_S-dermatodea_contig87287.16872.1 ID=mRNA_S-dermatodea_contig87287.16872.1|Name=mRNA_S-dermatodea_contig87287.16872.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=660bp|location=Sequence derived from alignment at S-dermatodea_contig87287:286..616+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCCGGCGGCTGTGCACCGTGAGGCGCGCCGGCGACGGCATGAACAGTCG
CATCGGCGGGGGGAGAAATTTCATGATGAATCGTCTCGAGAGCAACACGG
AGCAGTGGGGCGGCGGCGATTCCAATTATATCACCGAGGGCAAGCGCACG
CGTACCGGACAGGGGGATAACTTGCCTTCCTCCGGAGACAAATTGTTCAT
GTTCGGCGAATTCATTATTCGGCGAAACCATATCTACGAGGGAATGTCCC
GCGAGGGCGCGGGAGCCACCGCGCCGGACCAGGTTCACCTCGACCAGTCG
AGGCTCGGCAGACAGGGTCAAACAGTCAGGGGCCGGCGGCTGTGCACCGT
GAGGCGCGCCGGCGACGGCATGAACAGTCGCATCGGCGGGGGGAGAAATT
TCATGATGAATCGTCTCGAGAGCAACACGGAGCAGTGGGGCGGCGGCGAT
TCCAATTATATCACCGAGGGCAAGCGCACGCGTACCGGACAGGGGGATAA
CTTGCCTTCCTCCGGAGACAAATTGTTCATGTTCGGCGAATTCATTATTC
GGCGAAACCATATCTACGAGGGAATGTCCCGCGAGGGCGCGGGAGCCACC
GCGCCGGACCAGGTTCACCTCGACCAGTCGAGGCTCGGCAGACAGGGTCA
AACAGTCAGG
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