mRNA_S-dermatodea_contig8718.16865.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8718.16865.1
Unique NamemRNA_S-dermatodea_contig8718.16865.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8718.16865.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8718contigS-dermatodea_contig8718:8337..8735 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size399
Cds size399
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925361.8952515-CDS-S-dermatodea_contig8718:8336..87351622925361.8952515-CDS-S-dermatodea_contig8718:8336..8735Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8718 8337..8735 +
1694079881.6796222-CDS-S-dermatodea_contig8718:8336..87351694079881.6796222-CDS-S-dermatodea_contig8718:8336..8735Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8718 8337..8735 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8718.16865.1prot_S-dermatodea_contig8718.16865.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8718 8337..8735 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8718.16865.1

>prot_S-dermatodea_contig8718.16865.1 ID=prot_S-dermatodea_contig8718.16865.1|Name=mRNA_S-dermatodea_contig8718.16865.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=133bp
MLRSSPSSSPRLSIAVALSSVDIPLSTKASFDLAALVDPPTEPAAFMVCS
RWQCALRWYVQSWLRRNLYPCREAIRSRPNLQQGRAGRSTEVLQLFWCVH
LRGSPVTVCELLWGHRRFYLLSRASAMAVVWER
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mRNA from alignment at S-dermatodea_contig8718:8337..8735+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8718.16865.1 ID=mRNA_S-dermatodea_contig8718.16865.1|Name=mRNA_S-dermatodea_contig8718.16865.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=399bp|location=Sequence derived from alignment at S-dermatodea_contig8718:8337..8735+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTTACGGTCATCACCTTCAAGTTCCCCCCGCCTGTCCATCGCTGTAGC
CCTTTCCAGCGTTGATATTCCGCTGTCGACCAAAGCGTCCTTCGACCTCG
CTGCGCTAGTCGACCCACCCACCGAGCCGGCCGCGTTCATGGTGTGCAGT
CGGTGGCAGTGTGCCTTGCGCTGGTATGTTCAAAGCTGGCTCCGGCGTAA
CTTGTACCCCTGTAGAGAGGCAATAAGGAGCAGGCCGAACCTCCAGCAGG
GGAGAGCAGGACGCAGTACTGAAGTGCTACAACTGTTTTGGTGCGTGCAT
CTGCGCGGGTCGCCTGTGACTGTGTGCGAGCTTCTGTGGGGGCACCGCCG
CTTCTATCTACTCTCGCGCGCAAGCGCTATGGCTGTGGTTTGGGAGCGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig8718:8337..8735+

>mRNA_S-dermatodea_contig8718.16865.1 ID=mRNA_S-dermatodea_contig8718.16865.1|Name=mRNA_S-dermatodea_contig8718.16865.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=798bp|location=Sequence derived from alignment at S-dermatodea_contig8718:8337..8735+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTTACGGTCATCACCTTCAAGTTCCCCCCGCCTGTCCATCGCTGTAGC
CCTTTCCAGCGTTGATATTCCGCTGTCGACCAAAGCGTCCTTCGACCTCG
CTGCGCTAGTCGACCCACCCACCGAGCCGGCCGCGTTCATGGTGTGCAGT
CGGTGGCAGTGTGCCTTGCGCTGGTATGTTCAAAGCTGGCTCCGGCGTAA
CTTGTACCCCTGTAGAGAGGCAATAAGGAGCAGGCCGAACCTCCAGCAGG
GGAGAGCAGGACGCAGTACTGAAGTGCTACAACTGTTTTGGTGCGTGCAT
CTGCGCGGGTCGCCTGTGACTGTGTGCGAGCTTCTGTGGGGGCACCGCCG
CTTCTATCTACTCTCGCGCGCAAGCGCTATGGCTGTGGTTTGGGAGCGGA
TGTTACGGTCATCACCTTCAAGTTCCCCCCGCCTGTCCATCGCTGTAGCC
CTTTCCAGCGTTGATATTCCGCTGTCGACCAAAGCGTCCTTCGACCTCGC
TGCGCTAGTCGACCCACCCACCGAGCCGGCCGCGTTCATGGTGTGCAGTC
GGTGGCAGTGTGCCTTGCGCTGGTATGTTCAAAGCTGGCTCCGGCGTAAC
TTGTACCCCTGTAGAGAGGCAATAAGGAGCAGGCCGAACCTCCAGCAGGG
GAGAGCAGGACGCAGTACTGAAGTGCTACAACTGTTTTGGTGCGTGCATC
TGCGCGGGTCGCCTGTGACTGTGTGCGAGCTTCTGTGGGGGCACCGCCGC
TTCTATCTACTCTCGCGCGCAAGCGCTATGGCTGTGGTTTGGGAGCGG
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