mRNA_S-dermatodea_contig8714.16857.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8714.16857.1
Unique NamemRNA_S-dermatodea_contig8714.16857.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8714.16857.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8714contigS-dermatodea_contig8714:2214..3208 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size995
Cds size699
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8714.16857.1prot_S-dermatodea_contig8714.16857.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8714 2239..2937 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925361.5576432-UTR-S-dermatodea_contig8714:2213..22381622925361.5576432-UTR-S-dermatodea_contig8714:2213..2238Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8714 2214..2238 +
1694079881.5290837-UTR-S-dermatodea_contig8714:2213..22381694079881.5290837-UTR-S-dermatodea_contig8714:2213..2238Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8714 2214..2238 +
1622925361.5770109-UTR-S-dermatodea_contig8714:2937..32081622925361.5770109-UTR-S-dermatodea_contig8714:2937..3208Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8714 2938..3208 +
1694079881.552027-UTR-S-dermatodea_contig8714:2937..32081694079881.552027-UTR-S-dermatodea_contig8714:2937..3208Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8714 2938..3208 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925361.5673382-CDS-S-dermatodea_contig8714:2238..29371622925361.5673382-CDS-S-dermatodea_contig8714:2238..2937Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8714 2239..2937 +
1694079881.5411947-CDS-S-dermatodea_contig8714:2238..29371694079881.5411947-CDS-S-dermatodea_contig8714:2238..2937Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8714 2239..2937 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8714.16857.1

>prot_S-dermatodea_contig8714.16857.1 ID=prot_S-dermatodea_contig8714.16857.1|Name=mRNA_S-dermatodea_contig8714.16857.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=233bp
MIALLLLSFIHPLLSQGLVYSLPAIITCSTGVLFKGRTLHEGTAYYNSQT
GISASTLRRTTIGTRPRWNPTIHPGRWNFRIRTETHSHRKKDDKKEAKTT
KIFASHHHLTTFSLFTYITSSFRFFYSLIFFLPGEKKKKVLNSSYFAFSA
VGSSSGREETRNASIGYKLPGSSCNQCASLGAVASASISGVHPPLPSTST
SMGRVRLDNQSILSPSARNLPNQCPNQDRTQQ*
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mRNA from alignment at S-dermatodea_contig8714:2214..3208+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8714.16857.1 ID=mRNA_S-dermatodea_contig8714.16857.1|Name=mRNA_S-dermatodea_contig8714.16857.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=995bp|location=Sequence derived from alignment at S-dermatodea_contig8714:2214..3208+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CTTTGCTCTTGCTTGCCCTTGATTCATGATCGCTCTTCTTCTTCTGTCCT
TCATTCATCCACTTCTTTCTCAAGGTCTCGTTTACTCTCTCCCAGCTATT
ATTACGTGCTCCACAGGAGTCTTATTCAAAGGCCGCACGCTCCACGAGGG
CACCGCGTACTACAACAGCCAAACTGGTATCTCTGCCTCGACTCTGCGCA
GGACAACCATCGGCACCCGCCCGCGCTGGAACCCCACAATCCACCCCGGC
CGCTGGAATTTCCGAATCCGAACTGAGACTCACTCGCATCGAAAAAAGGA
CGACAAAAAGGAGGCAAAAACAACTAAAATTTTTGCATCACATCATCATC
TCACTACTTTCTCTCTTTTCACTTATATTACCTCTTCTTTCCGTTTTTTT
TATTCTCTCATATTTTTTCTTCCCGGCGAGAAAAAAAAAAAGGTGCTCAA
TTCTTCATACTTCGCTTTTTCCGCCGTCGGCTCATCATCAGGGAGAGAAG
AGACAAGAAACGCCTCCATCGGGTACAAACTTCCCGGAAGCAGCTGTAAC
CAATGCGCTTCGCTCGGCGCCGTCGCGAGCGCATCAATCAGCGGGGTTCA
CCCTCCTCTTCCCTCCACGAGCACAAGCATGGGACGCGTCCGCCTCGACA
ATCAATCAATTTTGTCGCCGAGTGCACGCAACCTTCCCAACCAATGCCCG
AACCAAGACAGGACGCAGCAGTAACACACTAAAACTTGTGAAAACACCTT
TGCTCGGGTGCGCTCTCACTTCTTCTGTGTGCTGCTTGCTGTTTACCAGC
GAAAAAAAAGAACGAAAAAAAAACCCCAGCAAAGAGCTACTACCACCGAC
ATTGTCTGTCCCATCCGACCCGGTGGCGAACCTAAAAAATGCCACCCCCG
CACACGAATGCACGCACACAAACAAACACACACACACAACAACAACATGC
CACAAACACAGCACCACAAGAGCCAACCTCGAAATGAATCCCCCA
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Coding sequence (CDS) from alignment at S-dermatodea_contig8714:2214..3208+

>mRNA_S-dermatodea_contig8714.16857.1 ID=mRNA_S-dermatodea_contig8714.16857.1|Name=mRNA_S-dermatodea_contig8714.16857.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1398bp|location=Sequence derived from alignment at S-dermatodea_contig8714:2214..3208+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGATCGCTCTTCTTCTTCTGTCCTTCATTCATCCACTTCTTTCTCAAGG
TCTCGTTTACTCTCTCCCAGCTATTATTACGTGCTCCACAGGAGTCTTAT
TCAAAGGCCGCACGCTCCACGAGGGCACCGCGTACTACAACAGCCAAACT
GGTATCTCTGCCTCGACTCTGCGCAGGACAACCATCGGCACCCGCCCGCG
CTGGAACCCCACAATCCACCCCGGCCGCTGGAATTTCCGAATCCGAACTG
AGACTCACTCGCATCGAAAAAAGGACGACAAAAAGGAGGCAAAAACAACT
AAAATTTTTGCATCACATCATCATCTCACTACTTTCTCTCTTTTCACTTA
TATTACCTCTTCTTTCCGTTTTTTTTATTCTCTCATATTTTTTCTTCCCG
GCGAGAAAAAAAAAAAGGTGCTCAATTCTTCATACTTCGCTTTTTCCGCC
GTCGGCTCATCATCAGGGAGAGAAGAGACAAGAAACGCCTCCATCGGGTA
CAAACTTCCCGGAAGCAGCTGTAACCAATGCGCTTCGCTCGGCGCCGTCG
CGAGCGCATCAATCAGCGGGGTTCACCCTCCTCTTCCCTCCACGAGCACA
AGCATGGGACGCGTCCGCCTCGACAATCAATCAATTTTGTCGCCGAGTGC
ACGCAACCTTCCCAACCAATGCCCGAACCAAGACAGGACGCAGCAGTAAA
TGATCGCTCTTCTTCTTCTGTCCTTCATTCATCCACTTCTTTCTCAAGGT
CTCGTTTACTCTCTCCCAGCTATTATTACGTGCTCCACAGGAGTCTTATT
CAAAGGCCGCACGCTCCACGAGGGCACCGCGTACTACAACAGCCAAACTG
GTATCTCTGCCTCGACTCTGCGCAGGACAACCATCGGCACCCGCCCGCGC
TGGAACCCCACAATCCACCCCGGCCGCTGGAATTTCCGAATCCGAACTGA
GACTCACTCGCATCGAAAAAAGGACGACAAAAAGGAGGCAAAAACAACTA
AAATTTTTGCATCACATCATCATCTCACTACTTTCTCTCTTTTCACTTAT
ATTACCTCTTCTTTCCGTTTTTTTTATTCTCTCATATTTTTTCTTCCCGG
CGAGAAAAAAAAAAAGGTGCTCAATTCTTCATACTTCGCTTTTTCCGCCG
TCGGCTCATCATCAGGGAGAGAAGAGACAAGAAACGCCTCCATCGGGTAC
AAACTTCCCGGAAGCAGCTGTAACCAATGCGCTTCGCTCGGCGCCGTCGC
GAGCGCATCAATCAGCGGGGTTCACCCTCCTCTTCCCTCCACGAGCACAA
GCATGGGACGCGTCCGCCTCGACAATCAATCAATTTTGTCGCCGAGTGCA
CGCAACCTTCCCAACCAATGCCCGAACCAAGACAGGACGCAGCAGTAA
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