mRNA_S-dermatodea_contig87126.16855.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig87126.16855.1
Unique NamemRNA_S-dermatodea_contig87126.16855.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig87126.16855.1 vs. uniprot
Match: A0A8F0FDG9_9PHAE (NADH-ubiquinone oxidoreductase chain 1 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0FDG9_9PHAE)

HSP 1 Score: 195 bits (495), Expect = 1.140e-59
Identity = 102/120 (85.00%), Postives = 111/120 (92.50%), Query Frame = 1 
Query:    1 IFFILLNIISVVIPLLIGIAYFTLAERKIMASIQRRRGPNVVGYMGLFQPLADGFKLFVKETILPTNANLSLFIIAPIITFVLSLISWSVIPFGEGQVIADLQLGILYSLAISSLGVYGV 360
            I F L+NIIS+V+PLLI +AYFTLAERKIM SIQRRRGPNV+GYMGL QPLADG KLFVKET+LPTNANL LF+IAP+ITF+LSLISW VIPFGEGQVIADL LGILYSLAISSLGVYGV
Sbjct:    6 IIFTLINIISLVVPLLISVAYFTLAERKIMGSIQRRRGPNVIGYMGLLQPLADGLKLFVKETLLPTNANLILFVIAPLITFILSLISWVVIPFGEGQVIADLHLGILYSLAISSLGVYGV 125
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BLAST of mRNA_S-dermatodea_contig87126.16855.1 vs. uniprot
Match: Q2TUC9_DICDH (NADH-ubiquinone oxidoreductase chain 1 n=2 Tax=Dictyota TaxID=2875 RepID=Q2TUC9_DICDH)

HSP 1 Score: 192 bits (489), Expect = 8.000e-59
Identity = 100/115 (86.96%), Postives = 108/115 (93.91%), Query Frame = 1 
Query:   16 LNIISVVIPLLIGIAYFTLAERKIMASIQRRRGPNVVGYMGLFQPLADGFKLFVKETILPTNANLSLFIIAPIITFVLSLISWSVIPFGEGQVIADLQLGILYSLAISSLGVYGV 360
            LNI+S+V+PLLI +AYFTLAERKIMASIQRRRGPNVVGYMGL QPLADG KLFVKETILPTNAN  LFIIAPIITFVLSLISW+VIPFG GQVI+DL LG+LYSLA+SSLGVYGV
Sbjct:    6 LNILSLVVPLLIAVAYFTLAERKIMASIQRRRGPNVVGYMGLLQPLADGLKLFVKETILPTNANTFLFIIAPIITFVLSLISWAVIPFGNGQVISDLHLGVLYSLAVSSLGVYGV 120
[Close]
BLAST of mRNA_S-dermatodea_contig87126.16855.1 vs. uniprot
Match: A0A4Y5T7T0_9PHAE (NADH-ubiquinone oxidoreductase chain 1 n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A4Y5T7T0_9PHAE)

HSP 1 Score: 191 bits (486), Expect = 2.390e-58
Identity = 99/115 (86.09%), Postives = 107/115 (93.04%), Query Frame = 1 
Query:   16 LNIISVVIPLLIGIAYFTLAERKIMASIQRRRGPNVVGYMGLFQPLADGFKLFVKETILPTNANLSLFIIAPIITFVLSLISWSVIPFGEGQVIADLQLGILYSLAISSLGVYGV 360
            LNI+S+V+PLLI +AYFTLAERKIMASIQRRRGPNV+GYMGL QPLADG KLFVKETILPTNAN  LF+ APIITFVLSLISW+VIPFG GQVIADL LGILYSLA+SSLGVYGV
Sbjct:    8 LNILSLVVPLLIAVAYFTLAERKIMASIQRRRGPNVIGYMGLLQPLADGLKLFVKETILPTNANTFLFVFAPIITFVLSLISWAVIPFGNGQVIADLPLGILYSLAVSSLGVYGV 122
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BLAST of mRNA_S-dermatodea_contig87126.16855.1 vs. uniprot
Match: A0A7S6ZPD7_9STRA (NADH-ubiquinone oxidoreductase chain 1 n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6ZPD7_9STRA)

HSP 1 Score: 180 bits (457), Expect = 5.450e-54
Identity = 90/116 (77.59%), Postives = 108/116 (93.10%), Query Frame = 1 
Query:   13 LLNIISVVIPLLIGIAYFTLAERKIMASIQRRRGPNVVGYMGLFQPLADGFKLFVKETILPTNANLSLFIIAPIITFVLSLISWSVIPFGEGQVIADLQLGILYSLAISSLGVYGV 360
            LL I+S+V+PLLI +AYFTLAERK+MASIQRRRGPNVVGYMGL QPLADG KLFVKE++LP+NAN +LF++AP+ITFVLSL+ W+VIPFG+GQV+ADL LG+LY LAISSLGVYG+
Sbjct:    5 LLTILSLVVPLLICVAYFTLAERKLMASIQRRRGPNVVGYMGLLQPLADGLKLFVKESVLPSNANSTLFLLAPMITFVLSLLGWAVIPFGQGQVVADLHLGLLYLLAISSLGVYGI 120
[Close]
BLAST of mRNA_S-dermatodea_contig87126.16855.1 vs. uniprot
Match: A0A344AL68_9PHAE (NADH-ubiquinone oxidoreductase chain 1 n=1 Tax=Sargassum yezoense TaxID=127449 RepID=A0A344AL68_9PHAE)

HSP 1 Score: 179 bits (455), Expect = 1.030e-53
Identity = 91/117 (77.78%), Postives = 106/117 (90.60%), Query Frame = 1 
Query:   10 ILLNIISVVIPLLIGIAYFTLAERKIMASIQRRRGPNVVGYMGLFQPLADGFKLFVKETILPTNANLSLFIIAPIITFVLSLISWSVIPFGEGQVIADLQLGILYSLAISSLGVYGV 360
            ILLNII +V+PLLI +AYFTLAERKIMA IQRR+GPNV+GY+GL QPLADG KLFVKET+LPTNAN+ LF++AP+ITF+LSLISW+VIPF  G VI+D QLG+LY LAISSLGVYGV
Sbjct:    8 ILLNIIDLVLPLLIAVAYFTLAERKIMAGIQRRKGPNVIGYLGLLQPLADGLKLFVKETVLPTNANIVLFVLAPLITFILSLISWAVIPFSYGNVISDPQLGVLYFLAISSLGVYGV 124
[Close]
BLAST of mRNA_S-dermatodea_contig87126.16855.1 vs. uniprot
Match: A0A1L6KY30_9PHAE (NADH-ubiquinone oxidoreductase chain 1 n=1 Tax=Sargassum fluitans TaxID=143163 RepID=A0A1L6KY30_9PHAE)

HSP 1 Score: 179 bits (455), Expect = 1.180e-53
Identity = 91/117 (77.78%), Postives = 106/117 (90.60%), Query Frame = 1 
Query:   10 ILLNIISVVIPLLIGIAYFTLAERKIMASIQRRRGPNVVGYMGLFQPLADGFKLFVKETILPTNANLSLFIIAPIITFVLSLISWSVIPFGEGQVIADLQLGILYSLAISSLGVYGV 360
            ILLNII +V+PLLI +AYFTLAERKIMA IQRR+GPNV+GY+GL QPLADG KLFVKET+LPTNAN+ LF++AP+ITF+LSLISW+VIPF  G VI+D QLG+LY LAISSLGVYGV
Sbjct:    8 ILLNIIDLVLPLLIAVAYFTLAERKIMAGIQRRKGPNVIGYLGLLQPLADGLKLFVKETVLPTNANIVLFVLAPLITFILSLISWAVIPFSYGNVISDPQLGVLYFLAISSLGVYGV 124
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BLAST of mRNA_S-dermatodea_contig87126.16855.1 vs. uniprot
Match: E6ZEQ7_ECTSI (NADH-ubiquinone oxidoreductase chain 1 n=66 Tax=Phaeophyceae TaxID=2870 RepID=E6ZEQ7_ECTSI)

HSP 1 Score: 179 bits (454), Expect = 1.670e-53
Identity = 93/117 (79.49%), Postives = 104/117 (88.89%), Query Frame = 1 
Query:   10 ILLNIISVVIPLLIGIAYFTLAERKIMASIQRRRGPNVVGYMGLFQPLADGFKLFVKETILPTNANLSLFIIAPIITFVLSLISWSVIPFGEGQVIADLQLGILYSLAISSLGVYGV 360
            ILLNII +VIPLLI +AYFTLAERKIMA IQRRRGPNV+GYMGL QPLADG KLFVKET+LPTNAN+ LF++AP+ TF+LSLISW+VIPF  G VIAD QLG LY LA+SSLGVYGV
Sbjct:    8 ILLNIIDLVIPLLIAVAYFTLAERKIMAGIQRRRGPNVIGYMGLLQPLADGLKLFVKETVLPTNANIVLFVLAPLCTFILSLISWAVIPFSFGNVIADTQLGGLYFLAVSSLGVYGV 124
[Close]
BLAST of mRNA_S-dermatodea_contig87126.16855.1 vs. uniprot
Match: A0A1L2F1J2_9PHAE (NADH-ubiquinone oxidoreductase chain 1 n=2 Tax=Sargassaceae TaxID=3014 RepID=A0A1L2F1J2_9PHAE)

HSP 1 Score: 178 bits (451), Expect = 4.840e-53
Identity = 89/116 (76.72%), Postives = 105/116 (90.52%), Query Frame = 1 
Query:   13 LLNIISVVIPLLIGIAYFTLAERKIMASIQRRRGPNVVGYMGLFQPLADGFKLFVKETILPTNANLSLFIIAPIITFVLSLISWSVIPFGEGQVIADLQLGILYSLAISSLGVYGV 360
            LLNII +V+PLLI +AYFTLAERKIMA IQRR+GPNV+GY+GL QPLADG KLFVKET+LPTNAN+ LF++AP+ITF+LSLISW+VIPF  G VI+D QLG+LY LA+SSLGVYGV
Sbjct:    9 LLNIIDLVLPLLIAVAYFTLAERKIMAGIQRRKGPNVIGYLGLLQPLADGLKLFVKETVLPTNANIVLFVLAPLITFILSLISWAVIPFSFGSVISDPQLGVLYFLAVSSLGVYGV 124
[Close]
BLAST of mRNA_S-dermatodea_contig87126.16855.1 vs. uniprot
Match: A0A0U1XDI1_9PHAE (NADH-ubiquinone oxidoreductase chain 1 n=34 Tax=Phaeophyceae TaxID=2870 RepID=A0A0U1XDI1_9PHAE)

HSP 1 Score: 177 bits (449), Expect = 9.430e-53
Identity = 91/117 (77.78%), Postives = 104/117 (88.89%), Query Frame = 1 
Query:   10 ILLNIISVVIPLLIGIAYFTLAERKIMASIQRRRGPNVVGYMGLFQPLADGFKLFVKETILPTNANLSLFIIAPIITFVLSLISWSVIPFGEGQVIADLQLGILYSLAISSLGVYGV 360
            ILLNII +V+PLL+ +AYFTLAERKIMA IQRR+GPNV+GYMGL QPLADG KLFVKET+LPTNAN+ LFI+AP+ TF+LSLISW+VIPF  G VIAD QLG LY LA+SSLGVYGV
Sbjct:    8 ILLNIIDLVLPLLVAVAYFTLAERKIMAGIQRRKGPNVIGYMGLLQPLADGLKLFVKETVLPTNANIVLFILAPLCTFILSLISWAVIPFSFGNVIADTQLGGLYFLAVSSLGVYGV 124
[Close]
BLAST of mRNA_S-dermatodea_contig87126.16855.1 vs. uniprot
Match: A0A1I9LW81_9PHAE (NADH-ubiquinone oxidoreductase chain 1 n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LW81_9PHAE)

HSP 1 Score: 170 bits (431), Expect = 4.790e-50
Identity = 83/115 (72.17%), Postives = 100/115 (86.96%), Query Frame = 1 
Query:   16 LNIISVVIPLLIGIAYFTLAERKIMASIQRRRGPNVVGYMGLFQPLADGFKLFVKETILPTNANLSLFIIAPIITFVLSLISWSVIPFGEGQVIADLQLGILYSLAISSLGVYGV 360
            +NI+ +VIPLL+ +AYFTL ERKIM  IQRR+GPNV+GYMGL QPLADG KLFVKE +LPTNAN+ LFI+AP+ TF+LSLI W+VIPF  G VIAD+QLG+LY L++SSLGVYGV
Sbjct:   10 INILDIVIPLLVAVAYFTLTERKIMGGIQRRKGPNVIGYMGLLQPLADGLKLFVKELVLPTNANMVLFILAPLCTFILSLIIWAVIPFSFGNVIADVQLGVLYFLSVSSLGVYGV 124
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig87126.16855.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8F0FDG9_9PHAE1.140e-5985.00NADH-ubiquinone oxidoreductase chain 1 n=1 Tax=Pro... [more]
Q2TUC9_DICDH8.000e-5986.96NADH-ubiquinone oxidoreductase chain 1 n=2 Tax=Dic... [more]
A0A4Y5T7T0_9PHAE2.390e-5886.09NADH-ubiquinone oxidoreductase chain 1 n=1 Tax=Dic... [more]
A0A7S6ZPD7_9STRA5.450e-5477.59NADH-ubiquinone oxidoreductase chain 1 n=1 Tax=Sch... [more]
A0A344AL68_9PHAE1.030e-5377.78NADH-ubiquinone oxidoreductase chain 1 n=1 Tax=Sar... [more]
A0A1L6KY30_9PHAE1.180e-5377.78NADH-ubiquinone oxidoreductase chain 1 n=1 Tax=Sar... [more]
E6ZEQ7_ECTSI1.670e-5379.49NADH-ubiquinone oxidoreductase chain 1 n=66 Tax=Ph... [more]
A0A1L2F1J2_9PHAE4.840e-5376.72NADH-ubiquinone oxidoreductase chain 1 n=2 Tax=Sar... [more]
A0A0U1XDI1_9PHAE9.430e-5377.78NADH-ubiquinone oxidoreductase chain 1 n=34 Tax=Ph... [more]
A0A1I9LW81_9PHAE4.790e-5072.17NADH-ubiquinone oxidoreductase chain 1 n=1 Tax=Ple... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig87126contigS-dermatodea_contig87126:2..361 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score151.0
Seed ortholog evalue3.6e-34
Seed eggNOG ortholog1123366.TH3_05880
Preferred namenuoH
KEGG rclassRC00061
KEGG koko:K00337
KEGG TC3.D.1
KEGG ReactionR11945
KEGG Pathwayko00190,ko01100,map00190,map01100
KEGG ModuleM00144
GOsGO:0003674,GO:0003824,GO:0003954,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008137,GO:0008150,GO:0008152,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015980,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017144,GO:0019637,GO:0019693,GO:0022900,GO:0022904,GO:0034641,GO:0042773,GO:0042775,GO:0044237,GO:0044238,GO:0044281,GO:0045333,GO:0046034,GO:0046483,GO:0050136,GO:0055086,GO:0055114,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564
EggNOG free text desc.NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
EggNOG OGs1MU2R@1224,2JPWU@204441,2TS09@28211,COG1005@1,COG1005@2
EC1.6.5.3
COG Functional cat.C
Best tax levelRhodospirillales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size360
Cds size360
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925361.492334-CDS-S-dermatodea_contig87126:1..3611622925361.492334-CDS-S-dermatodea_contig87126:1..361Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig87126 2..361 -
1694079881.4983373-CDS-S-dermatodea_contig87126:1..3611694079881.4983373-CDS-S-dermatodea_contig87126:1..361Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig87126 2..361 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig87126.16855.1prot_S-dermatodea_contig87126.16855.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig87126 2..361 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig87126.16855.1

>prot_S-dermatodea_contig87126.16855.1 ID=prot_S-dermatodea_contig87126.16855.1|Name=mRNA_S-dermatodea_contig87126.16855.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=120bp
IFFILLNIISVVIPLLIGIAYFTLAERKIMASIQRRRGPNVVGYMGLFQP
LADGFKLFVKETILPTNANLSLFIIAPIITFVLSLISWSVIPFGEGQVIA
DLQLGILYSLAISSLGVYGV
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mRNA from alignment at S-dermatodea_contig87126:2..361-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig87126.16855.1 ID=mRNA_S-dermatodea_contig87126.16855.1|Name=mRNA_S-dermatodea_contig87126.16855.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=360bp|location=Sequence derived from alignment at S-dermatodea_contig87126:2..361- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATATTTTTTATTTTATTAAATATAATTAGCGTTGTAATACCCTTGTTAAT
TGGGATAGCATATTTTACACTAGCTGAAAGAAAAATTATGGCCTCAATTC
AACGTCGTCGAGGCCCTAATGTTGTCGGTTATATGGGGTTATTTCAACCT
TTAGCTGATGGTTTTAAGCTTTTTGTAAAAGAAACGATTTTGCCTACAAA
TGCAAACCTTAGTCTTTTTATTATTGCTCCTATTATTACTTTTGTTCTTA
GTTTAATTAGTTGGTCAGTTATTCCTTTTGGTGAAGGTCAAGTTATTGCA
GATCTTCAGCTAGGAATATTATACTCTTTAGCCATTTCTTCTTTGGGTGT
TTATGGTGTT
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Coding sequence (CDS) from alignment at S-dermatodea_contig87126:2..361-

>mRNA_S-dermatodea_contig87126.16855.1 ID=mRNA_S-dermatodea_contig87126.16855.1|Name=mRNA_S-dermatodea_contig87126.16855.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=720bp|location=Sequence derived from alignment at S-dermatodea_contig87126:2..361- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATATTTTTTATTTTATTAAATATAATTAGCGTTGTAATACCCTTGTTAAT
TGGGATAGCATATTTTACACTAGCTGAAAGAAAAATTATGGCCTCAATTC
AACGTCGTCGAGGCCCTAATGTTGTCGGTTATATGGGGTTATTTCAACCT
TTAGCTGATGGTTTTAAGCTTTTTGTAAAAGAAACGATTTTGCCTACAAA
TGCAAACCTTAGTCTTTTTATTATTGCTCCTATTATTACTTTTGTTCTTA
GTTTAATTAGTTGGTCAGTTATTCCTTTTGGTGAAGGTCAAGTTATTGCA
GATCTTCAGCTAGGAATATTATACTCTTTAGCCATTTCTTCTTTGGGTGT
TTATGGTGTTATATTTTTTATTTTATTAAATATAATTAGCGTTGTAATAC
CCTTGTTAATTGGGATAGCATATTTTACACTAGCTGAAAGAAAAATTATG
GCCTCAATTCAACGTCGTCGAGGCCCTAATGTTGTCGGTTATATGGGGTT
ATTTCAACCTTTAGCTGATGGTTTTAAGCTTTTTGTAAAAGAAACGATTT
TGCCTACAAATGCAAACCTTAGTCTTTTTATTATTGCTCCTATTATTACT
TTTGTTCTTAGTTTAATTAGTTGGTCAGTTATTCCTTTTGGTGAAGGTCA
AGTTATTGCAGATCTTCAGCTAGGAATATTATACTCTTTAGCCATTTCTT
CTTTGGGTGTTTATGGTGTT
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