mRNA_S-dermatodea_contig8712.16853.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8712.16853.1
Unique NamemRNA_S-dermatodea_contig8712.16853.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig8712.16853.1 vs. uniprot
Match: D7FWN9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWN9_ECTSI)

HSP 1 Score: 312 bits (800), Expect = 6.190e-100
Identity = 187/212 (88.21%), Postives = 194/212 (91.51%), Query Frame = 1 
Query:   82 GVEQPYQGKVKGIIYPPPDIRAIVDKTARFVAKNGKSFEERIQASEEGKSAKFNFMRPHDPYYAYYEFKIRDFEENGDAPKXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----GDFKTAPSSVSRKAVMAPIAKAAKSLNKSTPPRSFEFSVGHPTGLTALDVDLIKLTAQFTAVGGRNFLSELARREAKNEQFQFLKHTHALFSYFTRCV 705
            GVEQPYQGKVKGIIYPPPDIRAIVDKTARFVAKNGKSFEERIQASEEGKSAKFNFMRPHDPYYAYYEFKIRDFEENGDAP+       XXXXXXXXXXXXXXXXXXXXXX     D K AP+SVSRKAVMAPIAKA KSLNK+T PR+FEFSVGHPTGLTALDVDLIKLTAQFTAVGGRNFL+ELA+REA+NEQFQFLKHTHALFSYFT  V
Sbjct:   47 GVEQPYQGKVKGIIYPPPDIRAIVDKTARFVAKNGKSFEERIQASEEGKSAKFNFMRPHDPYYAYYEFKIRDFEENGDAPRAAPATAAXXXXXXXXXXXXXXXXXXXXXXXAGKSDKKAAPASVSRKAVMAPIAKAVKSLNKATEPRAFEFSVGHPTGLTALDVDLIKLTAQFTAVGGRNFLAELAKREARNEQFQFLKHTHALFSYFTSLV 258
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BLAST of mRNA_S-dermatodea_contig8712.16853.1 vs. uniprot
Match: A0A836C863_9STRA (Surp module-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C863_9STRA)

HSP 1 Score: 229 bits (583), Expect = 2.910e-70
Identity = 136/203 (67.00%), Postives = 152/203 (74.88%), Query Frame = 1 
Query:   85 VEQPYQGKVKGIIYPPPDIRAIVDKTARFVAKNGKSFEERIQASEEGKSAKFNFMRPHDPYYAYYEFKIRDFEENGDAPKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDFKTAPSSVSRKAVMAPIAKAAKSLNKSTPPRSFEFSVGHPTGLTALDVDLIKLTAQFTAVGGRNFLSELARREAKNEQFQFLKHTHALFSYF 693
            VE   QGKVKGII PPP+IRAI DKTARFVAKNGKSFE+RI  SEEG+SAKFNFMRPHDPYYAYYE+KIR+ EE  D P       XXXXXXXXXXX                TA ++V +KAVMAPIAKAA+++ K   P  F FS GHPTGLTA D+DLIKLTAQ+TA GGR FL+ LAR+EA+NE FQFLK  HALFSYF
Sbjct:   33 VEAASQGKVKGIIVPPPEIRAIADKTARFVAKNGKSFEQRILNSEEGRSAKFNFMRPHDPYYAYYEYKIREVEEGRDTPAGAPAAPXXXXXXXXXXXADGEAKEPGKA-----TAAAAVQKKAVMAPIAKAARTIAKDVKPPPFVFSHGHPTGLTAHDLDLIKLTAQYTAAGGRQFLATLARKEAQNEMFQFLKGMHALFSYF 230
[Close]
BLAST of mRNA_S-dermatodea_contig8712.16853.1 vs. uniprot
Match: W7TP71_9STRA (SWAP/Surp n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TP71_9STRA)

HSP 1 Score: 187 bits (475), Expect = 3.950e-51
Identity = 108/211 (51.18%), Postives = 133/211 (63.03%), Query Frame = 1 
Query:   85 VEQPYQGKVKGIIYPPPDIRAIVDKTARFVAKNGKSFEERIQASEEGKSAKFNFMRPHDPYYAYYEFKIRDFEEN---GDAPKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDFKTAPSSVSRKAVMAPIAKAAKSLNK-STPPRSFEFSVGHPTGLTALDVDLIKLTAQFTAVGGRNFLSELARREAKNEQFQFLKHTHALFSYFTRCV 705
            + Q   GKV GIIYPPPDIRA+VDKTA++VA+NGKSFE+RI +SEEGKS+KFNFM+P DPY AYYE +IR FEE    G A K                                    ++VS+ +V+ PIAKAA  L+K   PP   EF + HP GL  LDV++IKLTAQ+TA  GR FL+ LA+RE +N  F+FLK +H LFSYFT  V
Sbjct:   25 IIQGRSGKVTGIIYPPPDIRAVVDKTAQWVARNGKSFEQRILSSEEGKSSKFNFMKPGDPYNAYYEHRIRQFEEGKGEGPAEKKAKIAEVSPPAAGETRDGKAVADTGETPTAVSAAPTTTVSKASVLGPIAKAA--LHKPEAPPPPQEFYISHPDGLNPLDVEIIKLTAQYTAASGRQFLAALAQREQRNPLFEFLKPSHILFSYFTTLV 233
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BLAST of mRNA_S-dermatodea_contig8712.16853.1 vs. uniprot
Match: A0A4D9CLT9_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CLT9_9STRA)

HSP 1 Score: 186 bits (473), Expect = 4.390e-51
Identity = 108/211 (51.18%), Postives = 133/211 (63.03%), Query Frame = 1 
Query:   85 VEQPYQGKVKGIIYPPPDIRAIVDKTARFVAKNGKSFEERIQASEEGKSAKFNFMRPHDPYYAYYEFKIRDFEEN---GDAPKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDFKTAPSSVSRKAVMAPIAKAAKSLNK-STPPRSFEFSVGHPTGLTALDVDLIKLTAQFTAVGGRNFLSELARREAKNEQFQFLKHTHALFSYFTRCV 705
            + Q   GKV GIIYPPPDIRA+VDKTA++VA+NGKSFE+RI +SEEGKS+KFNFM+P DPY AYYE +IR FEE    G A K                                    ++VS+ +V+ PIAKAA  L+K   PP   EF + HP GL  LDV++IKLTAQ+TA  GR FL+ LA+RE +N  F+FLK +H LFSYFT  V
Sbjct:   25 IIQGRSGKVTGIIYPPPDIRAVVDKTAQWVARNGKSFEQRILSSEEGKSSKFNFMKPGDPYNAYYEHRIRRFEEGKGEGPAEKKAKIAEASPPAAGETRDGKAVADTGKTPTAVSAAPTTTVSKASVLGPIAKAA--LHKPEAPPPPQEFYISHPDGLNPLDVEIIKLTAQYTAASGRQFLAALAQREQRNPLFEFLKPSHILFSYFTTLV 233
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BLAST of mRNA_S-dermatodea_contig8712.16853.1 vs. uniprot
Match: A0A8J2SH94_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SH94_9STRA)

HSP 1 Score: 177 bits (450), Expect = 4.710e-48
Identity = 104/206 (50.49%), Postives = 129/206 (62.62%), Query Frame = 1 
Query:   94 PYQGKVKGIIYPPPDIRAIVDKTARFVAKNGKSFEERIQASEEGKSAKFNFMRPHDPYYAYYEFKIRDFEENGDAPKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDFKTAPSSVSRKA-VMAPIAKAAKSLNK-STPPRSFEFSVGHPTGLTALDVDLIKLTAQFTAVGGRNFLSELARREAKNEQFQFLKHTHALFSYFTRCV 705
            P  G+V G+I PPPDIRAIVDKTA FVA+NGK FE RIQAS EG+S KF FMRP+DPY AYYEFKIR+ EEN    K                              + K A S+VS++A V AP+ +A + L + +TPP      +  P+ +T LD ++IKLTAQ+TA  GR FL+ LA+RE +N QF FLK TH LFSYFT+ V
Sbjct:   22 PSSGEVTGVIRPPPDIRAIVDKTALFVARNGKQFEARIQASAEGQSQKFAFMRPNDPYNAYYEFKIREVEENDGELKVVEKPKVEAPVTT-----------------EVKAAASTVSKRATVAAPVQRALQGLGEETTPPVPLTAQLTTPSSVTPLDAEIIKLTAQYTAASGRQFLAGLAQREQRNPQFDFLKPTHVLFSYFTQLV 210
[Close]
BLAST of mRNA_S-dermatodea_contig8712.16853.1 vs. uniprot
Match: A0A7S3LZB0_9STRA (Hypothetical protein (Fragment) n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3LZB0_9STRA)

HSP 1 Score: 169 bits (429), Expect = 2.320e-47
Identity = 126/203 (62.07%), Postives = 151/203 (74.38%), Query Frame = 1 
Query:  100 QGKVKGIIYPPPDIRAIVDKTARFVAKNGKSFEERIQASEEGKSAKFNFMRPHDPYYAYYEFKIRDFEENGDAPKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDFKTAPSSVSRKAVMAPIAKAAKSL-NKSTPPRSFEFSVGHPTGLTALDVDLIKLTAQFTAVGGRNFLSELARREAKNEQFQFLKHTHALFSYFTRCV 705
            QGK+ G+I PPP+IRA+VDKTA FVAK GKSFE+R+ ASEEGK+AKFNFMRP DPY+AYYE KIR+ E       XXXXXXXXXXXXXXXXXXXXXXXXXXXXX       ++V + +++ PIA+ A++   +++P   F  +  HP GLT  DVD IKL AQ+TAV GR FL+ LA RE +N QF FLK TH LFSYFT  V
Sbjct:    8 QGKITGVIIPPPEIRAVVDKTAAFVAKIGKSFEQRVLASEEGKTAKFNFMRPFDPYHAYYEMKIREGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTV-KASILNPIAQLAQTKPTEASPELEFSVANSHPAGLTPFDVDAIKLAAQYTAVNGREFLANLALREQRNPQFDFLKPTHMLFSYFTYLV 209
[Close]
BLAST of mRNA_S-dermatodea_contig8712.16853.1 vs. uniprot
Match: A0A6G0X937_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X937_9STRA)

HSP 1 Score: 151 bits (382), Expect = 1.010e-38
Identity = 115/200 (57.50%), Postives = 144/200 (72.00%), Query Frame = 1 
Query:  100 QGKVKGIIYPPPDIRAIVDKTARFVAKNGKSFEERIQASEEGKSAKFNFMRPHDPYYAYYEFKIRDFEENGDAPKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDFKTAPSSVSRKAVMAPIAKAAKSL-NKSTPPRSFEFSVGHPTGLTALDVDLIKLTAQFTAVGGRNFLSELARREAKNEQFQFLKHTHALFSYFT 696
            QG+V G+IYPPP+IRA+VDKTA+FVA+NG+SFE +I    E  SAKF+F++P DPY AYYE K+++FE   +   XXXXXXXXXXXXXXXXXXXXXXXX     G        V +KAV   ++K+ KSL +K+ PP   +F   HPT LT LD +++ LTAQ+TAV G+ FLS LA RE +N QF FLK TH LF+YFT
Sbjct:   11 QGRVTGLIYPPPEIRAVVDKTAQFVARNGRSFERKIAG--EVISAKFSFLKPSDPYNAYYEHKVQEFENQANXXXXXXXXXXXXXXXXXXXXXXXXXXXAKIEVG-------VVEKKAVDGIVSKSVKSLKDKNEPPAEEQFKQKHPT-LTPLDQEIMYLTAQYTAVSGKPFLSGLATREQRNPQFDFLKPTHPLFAYFT 200
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BLAST of mRNA_S-dermatodea_contig8712.16853.1 vs. uniprot
Match: A0A6A4YYN6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A6A4YYN6_9STRA)

HSP 1 Score: 149 bits (377), Expect = 1.050e-38
Identity = 100/199 (50.25%), Postives = 133/199 (66.83%), Query Frame = 1 
Query:  103 GKVKGIIYPPPDIRAIVDKTARFVAKNGKSFEERIQASEEGKSAKFNFMRPHDPYYAYYEFKIRDFEENGDAPKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDFKTAPSSVSRKAVMAPIAKAAKSL-NKSTPPRSFEFSVGHPTGLTALDVDLIKLTAQFTAVGGRNFLSELARREAKNEQFQFLKHTHALFSYFT 696
            G+V GIIYPPP+IRA+VDKTA+FVA+NG+SFE +I    E  SAKF+F++P+DPY+AYYE K+ +FE   + P+       XXXXXXXXXXXX             K     V +K + A ++K+ + + +K+ PP   +F   HPT LT LD +++ LTAQ+TAV G+ FLS LA RE +N QF FLK TH LF+YFT
Sbjct:   13 GRVTGIIYPPPEIRAVVDKTAQFVARNGRSFERKIAG--EVISAKFSFLKPNDPYHAYYEHKVEEFETQLNEPEPAKSPAAXXXXXXXXXXXXAPAALPSEPA---KIEVGVVEKKPIEAVVSKSLQKIKDKNQPPAEEQFKQKHPT-LTPLDQEIMYLTAQYTAVSGKPFLSGLATREQRNPQFDFLKPTHPLFAYFT 205
[Close]
BLAST of mRNA_S-dermatodea_contig8712.16853.1 vs. uniprot
Match: A0A8K1FFU8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FFU8_PYTOL)

HSP 1 Score: 151 bits (382), Expect = 1.320e-38
Identity = 100/205 (48.78%), Postives = 131/205 (63.90%), Query Frame = 1 
Query:  100 QGKVKGIIYPPPDIRAIVDKTARFVAKNGKSFEERIQASEEGKSAKFNFMRPHDPYYAYYEFKIRDF-EENGDAPKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDFKTAPSSVSRKAVMAPIAKAAKSLNKST--PPRSFEFSVGHPTGLTALDVDLIKLTAQFTAVGGRNFLSELARREAKNEQFQFLKHTHALFSYFTRCV 705
            QG+V G+IYPPPDIRAIVDKTA+FVA+NG+SFE +I    E  + +F+F++  DPY AYYE K+ +F E+N   P+                 XXXXXXXXX            V +KAV A  AK AK L ++T  PP   +F + HP  L+ALD +++ LTAQ+TA+ G++FL+ LA RE +N QF FLK THALF+YFT  V
Sbjct:    8 QGRVTGLIYPPPDIRAIVDKTAQFVARNGRSFERKIAG--ETANPRFSFLKAADPYNAYYEHKVNEFIEQNAQPPQETPAPAAAAPVSQETAAXXXXXXXXXVETPVAPQGDVVVEKKAVEAVTAKVAKKLRETTLSPPEEEKFKIKHPQ-LSALDQEIMYLTAQYTALSGKSFLAGLATREQRNPQFDFLKPTHALFAYFTALV 209
[Close]
BLAST of mRNA_S-dermatodea_contig8712.16853.1 vs. uniprot
Match: F0WZA1_9STRA (Splicing factor 3 subunit putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WZA1_9STRA)

HSP 1 Score: 152 bits (384), Expect = 1.460e-38
Identity = 102/204 (50.00%), Postives = 132/204 (64.71%), Query Frame = 1 
Query:  100 QGKVKGIIYPPPDIRAIVDKTARFVAKNGKSFEERIQASEEGKSAKFNFMRPHDPYYAYYEFKIRDFEENGDAPKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDFKTAPSSVSRKAVMAPIAKAAKSLNKST--PPRSFEFSVGHPTGLTALDVDLIKLTAQFTAVGGRNFLSELARREAKNEQFQFLKHTHALFSYFTRCV 705
            QGKV G+IYPPPDIRA+VDKTA+FVA+NG++FE R+    E  S KF+F++P DPY+AYYEFK+ +F E     +     XXXXXXXXXXXXX                      +KAV    AK ++ LN+ T  PP    + + HPT L+ALD +++ LTAQ+TA  G++FL+ LA RE +N QF FLK THALF+YFT  V
Sbjct:  221 QGKVTGLIYPPPDIRAVVDKTAQFVARNGRNFERRLAG--ETSSTKFSFLKPSDPYHAYYEFKVNEFTEKEFVTEENKKSXXXXXXXXXXXXXPEKSGIAENKLDAVNKNQVIFEKKAVETLTAKVSRKLNEKTIEPPPPELYKIQHPT-LSALDQEIMYLTAQYTAHSGKSFLAGLATREQRNPQFDFLKPTHALFAYFTALV 421
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8712.16853.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWN9_ECTSI6.190e-10088.21Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836C863_9STRA2.910e-7067.00Surp module-domain-containing protein n=1 Tax=Trib... [more]
W7TP71_9STRA3.950e-5151.18SWAP/Surp n=1 Tax=Nannochloropsis gaditana TaxID=7... [more]
A0A4D9CLT9_9STRA4.390e-5151.18Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A8J2SH94_9STRA4.710e-4850.49Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7S3LZB0_9STRA2.320e-4762.07Hypothetical protein (Fragment) n=2 Tax=Spumella e... [more]
A0A6G0X937_9STRA1.010e-3857.50Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A6A4YYN6_9STRA1.050e-3850.25Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A8K1FFU8_PYTOL1.320e-3848.78Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
F0WZA1_9STRA1.460e-3850.00Splicing factor 3 subunit putative n=1 Tax=Albugo ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8712contigS-dermatodea_contig8712:261..5621 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score317.4
Seed ortholog evalue5.8e-84
Seed eggNOG ortholog2880.D7FWN9
Preferred nameSF3A1
KEGG koko:K12825
KEGG Pathwayko03040,map03040
KEGG ModuleM00352
GOsGO:0000003,GO:0000245,GO:0000375,GO:0000377,GO:0000381,GO:0000389,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005686,GO:0006139,GO:0006376,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007276,GO:0007283,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0010468,GO:0016043,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0019219,GO:0019222,GO:0019953,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031323,GO:0031974,GO:0031981,GO:0032501,GO:0032504,GO:0032991,GO:0034622,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043484,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044703,GO:0045292,GO:0046483,GO:0048024,GO:0048232,GO:0048609,GO:0050684,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0051704,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0071004,GO:0071010,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097525,GO:0120114,GO:1901360,GO:1901363,GO:1902494,GO:1903311,GO:1990904
EggNOG free text desc.mRNA 3'-splice site recognition
EggNOG OGsKOG0007@1,KOG0007@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Hectar predicted targeting categoryother localisation
Exons5
Model size726
Cds size726
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8712.16853.1prot_S-dermatodea_contig8712.16853.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8712 261..5621 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925361.3646698-CDS-S-dermatodea_contig8712:260..4131622925361.3646698-CDS-S-dermatodea_contig8712:260..413Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8712 261..413 -
1694079881.4039507-CDS-S-dermatodea_contig8712:260..4131694079881.4039507-CDS-S-dermatodea_contig8712:260..413Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8712 261..413 -
1622925361.378564-CDS-S-dermatodea_contig8712:1097..12201622925361.378564-CDS-S-dermatodea_contig8712:1097..1220Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8712 1098..1220 -
1694079881.4150522-CDS-S-dermatodea_contig8712:1097..12201694079881.4150522-CDS-S-dermatodea_contig8712:1097..1220Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8712 1098..1220 -
1622925361.388832-CDS-S-dermatodea_contig8712:2253..23761622925361.388832-CDS-S-dermatodea_contig8712:2253..2376Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8712 2254..2376 -
1694079881.424532-CDS-S-dermatodea_contig8712:2253..23761694079881.424532-CDS-S-dermatodea_contig8712:2253..2376Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8712 2254..2376 -
1622925361.4051435-CDS-S-dermatodea_contig8712:3340..35591622925361.4051435-CDS-S-dermatodea_contig8712:3340..3559Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8712 3341..3559 -
1694079881.4411075-CDS-S-dermatodea_contig8712:3340..35591694079881.4411075-CDS-S-dermatodea_contig8712:3340..3559Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8712 3341..3559 -
1622925361.4176133-CDS-S-dermatodea_contig8712:5513..56211622925361.4176133-CDS-S-dermatodea_contig8712:5513..5621Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8712 5514..5621 -
1694079881.4556737-CDS-S-dermatodea_contig8712:5513..56211694079881.4556737-CDS-S-dermatodea_contig8712:5513..5621Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8712 5514..5621 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8712.16853.1

>prot_S-dermatodea_contig8712.16853.1 ID=prot_S-dermatodea_contig8712.16853.1|Name=mRNA_S-dermatodea_contig8712.16853.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=242bp
AEAALSNGGTAGEEAGVGEEGAGAGDSGVEQPYQGKVKGIIYPPPDIRAI
VDKTARFVAKNGKSFEERIQASEEGKSAKFNFMRPHDPYYAYYEFKIRDF
EENGDAPKPAPAKPVATEAEGDGDGGEDEGGAAAAGAGDFKTAPSSVSRK
AVMAPIAKAAKSLNKSTPPRSFEFSVGHPTGLTALDVDLIKLTAQFTAVG
GRNFLSELARREAKNEQFQFLKHTHALFSYFTRCVLLIFTL*
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mRNA from alignment at S-dermatodea_contig8712:261..5621-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8712.16853.1 ID=mRNA_S-dermatodea_contig8712.16853.1|Name=mRNA_S-dermatodea_contig8712.16853.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5361bp|location=Sequence derived from alignment at S-dermatodea_contig8712:261..5621- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCCGAAGCCGCCCTTTCAAATGGGGGCACGGCGGGGGAGGAGGCCGGGGT
GGGGGAGGAAGGGGCGGGGGCAGGCGACAGTGGCGTGGAGCAGCCGTATC
AGGGAAAGGTTAGTGTCCGTTCGATTCTGGAACGTGAGGGTGGTGCTCTC
GGCGGGCTGATACGTTCGGTGCATGGAGCTTTGTAGGCTTGTATAGATAT
GGCCCTACTTGTATTATATAAACCTGCAGGCAGCAAATCACGCATGACAC
TATAATAGTCTCGATTCCACACTATAATACGCACACAGCAGTATCATTAT
ACAAGTACAAGTAGAGCTTCAATATACTACTGTTGTATAAGCGCGCGCCA
GAAGATACCGCAGTGTTGCTGCTACTGCTGCAGTAGCCTATCGATGTGTG
TGTGTGCACAGTAACACGCGATTGTTGCGAAAATGCGCGCGGTCACGACG
GTTGTGGTTTTGCGAGGACGTCGGTGTGACTTTTTTTGTAGTCGTGGTAT
TATACGAAGTACAAGTATAGTTTTAGTTTTACATAAAACGAAGGCAGCAG
TTCTACAAGTAGGGTGTATCTGCACGTTTGCCGTCCCCCCGACGACCCAC
TTCTATACTATAATAGTAATATAATGGCAGTACTTTGAAATTGTCATGCA
CTGTGGCACTCGGCATACCCCAGCAGCGGTGTCGACATTTCTCGTCGCAT
CGTGTGATTCCTATGATACGATAGCTTCATGAGGCACACGCCACACCTCT
AGAGTCGGCCTTAATTCTCAAACTTGCTGAAAACGCGTTATTGGTGTGCT
GGTTTCGCTGATAGGCCTCGCAAGTTGGGGGTTCGAAGTTCTGAGCTTGA
CCTCTTCATGCCGACAGCGTGCGACGTGTCTCCTGTTGCTGGTTTGGAAT
TATTTATACATGTGAACCCGTGCAGCCCTGTCAGGACCGGTTTCACTGAT
ATAGTGTACTTGTAGTGTCTTGACGGGGAACACGACAATGGCAAGCGACA
ACATTATATACAACTAATTTAGTGCAACGCATAGACATCCAACATAACCA
CGTACTGTACTGTATGCGTGGAGTATTTGATAGAGACGTAGTATCAACTG
AGAAAAGGGCCCTTACACGAGGAACATCTGGGGATACAAAGATGTCGCCT
CTCCTTTCTAGATGAAGCGCGTCCTATATACTCGAAAGGAGCAGGACAGG
CAAAAAGTTGCTTTACCGCCCATGGCGAAACGACAAAAACCACGTATTAA
TAGAGAGGGAGGCTCGATACCTACGGCTCGTGTGGTGGATCGATCGTGAT
CCGACGCTGCCACCCGGCGATAAGCCAAGCCCCGCCCCTCTGCAACAGTG
CCGAAAGTCGTCAACTTGTGGCATTCAGACTTGACCCGCCTTGAAAGTTA
TCGGTGTGAGTAGACCCATAAAACCACCCATCACATACACCAATATTCCA
GGTTTTGGTGACCATGATACCGGGCTGTAAATCGCACCAGATGCAAGTTC
TTGAGGGGTTTTGAGACAAGTTATTTACTGTATCTAATAAGGGCGTGCAC
ATCTAATCACAGGCATCCGCTTTTTTTGTTCTGAGCAGGGCGGAGTCCTC
TGTTGAAACGTTGAAAGTGGTCGGCGCAGGACAGGGGAAAGTGCTACGTT
GAATCTTGAGCAATCGGCAGCGTTCAAACGACAGCATTCGCAGCCGTACC
AGCGCAGAAACACAGCTCATTTCTTGTACTAAACTCCAGCACAGGACTCG
CGAAAGTACACGTGTCGCACAACGCCCTCTTCCTGTAACCCACGTGCCGA
CCCAGTCTTATGTTGGCACCACCAAGCCGACGATCGCTTAATATGTACCA
GTGTTGATTGACCCGTTCACTCCTTCGAAGGCAAACCAGTACTGTACGCC
ATTGCTTTGACACCTACGATTCCCGAACCGGATCAACAAACCTTTACGCC
GTTTACCACGAAGCCCCCCCACCCCCCGCCCCCCCCCCGGTATCAGAGCC
TAAGTAACCTCGCATTCCAACGAATGCCATCTCCTGTGTCTTGTTACCCA
CCGTAAATTCAGGTGAAGGGCATAATCTACCCCCCTCCCGACATCCGAGC
GATCGTCGACAAGACGGCGCGCTTCGTGGCTAAGAACGGTAAGAGCTTCG
AGGAGCGTATCCAGGCCAGCGAGGAGGGGAAGAGTGCAAAGTTCAACTTC
ATGCGGCCCCACGACCCTTACTACGCGTACTACGAGTTCAAGATCAGGGA
TTTCGAGGAGAACGGGGATGCGCCCAAGCCGGTGAGCCAATCAACCCCTC
CCCAAGACTCCCGTGTACTTCGATTTGCTGGGCGATGCTGTCAGGAGAGG
AGGTGGCGTTGATGGGTCCGTGGTGGATTTTGGCTCCCTTTCTTTTGTCG
CGGAACAACAGCTGGTTTGGGTTTGGGATTTTTGCGATTGGAGATTCGCT
CGGGAGGGAGGCCCTTGGTCGCTGGCCGCTGGCCGCTTCAGTCTGTGCGG
TGGCGGCTTCTCACGGAAACTGACGGTGTCGCTGTTGTAGGCTCCTTCGA
CGTGATGGTTTGAGTGCCGACCGCAGCGGGTATTGTACGCCTGCCGAGAA
TTTCTATGCAACTGCTACCCTCGTTTCCGGGAACATTTTCGGCGTCGAGT
CAATTTTTCGATTCCTCGCTCAACTCCACCCTTTTACCTACAACATTTCC
ACTATTAATATTAGAAATGTCATTGTTAGTTCGTCAAGTCCCCTCGTCGA
GTAGAGGTTGACGTGTGACAATAATTACCGAACACGGATATGTTTGCGCC
GCTTCCGCTTGTCCCGCCATATGTCCGACCGGCCAAACCGCAGGCCTTGT
TTCGTTGCGTTCGAGCTAGGCATACAGAGCGGACTCCTTGATGGTGCTGA
AAAAAATCCCACGACCAAAACTTAAACTTTCTAAATCACGTGAACACGCA
CGGAAACTGATCCCCCAAAACATCGCACTCAACCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCACCCCCACCCGCCCCACCACCCCCACCGGCTGCCCAC
CACCCCCCCTCTTCTACCCCCCCCCCCCCCCAACNNNNNNNNNNCCTCAT
CACCCCGCGAAACCTGCCCCCCCCAACCCCCCCCCCACCCCCCCCCCCCC
CCCCCCCTACCGACTTCCTGAAGCCTCAACCGTCATGACGCCAACTGCTG
TTGACCGACACACCTTTTATGCTAACCTCGCCACGCCAACACTAGGCCCC
GGCCAAGCCGGTCGCGACGGAAGCCGAAGGGGATGGGGATGGAGGGGAGG
ACGAGGGCGGCGCGGCGGCGGCCGGCGCTGGAGATTTCAAGACCGCTCCC
TCGTCGGTCTCTCGAAAGGTGAGGGTGGGCGTTAGGCCGCTGTGTAACCC
CTCCCCCCCCCGAACCACCCCATATATCGGTTGGCGTCGCAAACGCAAGG
GTGACAACCAGCAGCTGGTATTAGTATTAATATTAATATCATCCTTGTGA
AACGCAGCCTGGCCGGCGAAAACCCGGCATATCGCTCCGTCCCCGCATTG
TTGGGACGCGTGGTATATGTCCGTTTGGATACGCTATGTTTTTTAACATC
AGTTTAACAAAAGTCCCCCCCCCCCCCCCCCCCGAGGTCTATGGTCTAAC
GACTACGGCATGCACGATCAATGAGTAAGTGTAGTGTTCCCCCAGAAGTT
GCGTGGCGAGGTGGCGCTTTAGGGTATGAGATTGTATTGGTGTTGGTGTT
TGCTGCTTGCTAAGGTGTTGTACATGTGGATGTGTGTTTTGTGTAGCTCG
ACTGTTGTAGCGCGTGCCAATTCGTGGTTAGTTGAGCAAGGGCGGTGTCG
GTGTTTCCGACACCCTGCTGGTTGAGGCAACCTAGTGAGGTACTGTAACT
GTTTTGTGTTTTACAGGTTCCTGTTTTGCGAGTACCTGTTTTGGTGGGTT
GTGGTGTGACTATGTGGTGTTAGTTATTATATTGTCAATGCTGTGTGTTT
CAACTGAGAGAGGACGAATCAGCCGGACACTTTTATTGCAAACGGGCGCG
CTCCTCTTCCATACAATGTAGCCTTCGGCCAAACGCTATACCTGCCTCGC
TCGGGCCGGGATATCAAAGCGGCAACCAGCGCCCACGTGTGCGAGGGGTC
GTGCTTGAACCTTGCGCGCGTGGGCGTGTGTTGGTCGCTTTGTAAGTTGG
TTTTTGCTGTAATAATAGATGCTTCCAATCATATGCCGGACCGGGCTTCA
GCCTGTCAATGCTCGCCTCTCGCTCTCCTGCGCGTGCTTCTGCTAGTGAC
TGACTGCTCATTACAATATATGACTGAAGAAGTGTGTATCTAACGTGCTT
TTTGACGGTGTGATGCCGCTGCTGCGATGTGGGTGCCCTGGTTTCTCGTA
GGCGGTGATGGCGCCCATCGCGAAGGCGGCCAAGTCTCTCAACAAGAGCA
CCCCGCCGCGGTCGTTCGAGTTCAGCGTCGGGCATCCCACAGGGCTGACG
GCGCTCGACGTGGACCTTATCAAGGTTAGCAGGGGTTTTTCGGCGCTGCT
AAATGACCCTTTTGAGGAAGACCTAGGCACTCCGCGTGTAGTGCCAAGTG
CAAATGCGATGTCCAGGAGATGGGGCAGCGGCGTCGCGCCGAGAAGTGGC
TTCTTGTTTCGTTGGTTCGGTGATGCATTCGATGCCTTGGCTTGTTTTTT
TTCTCGTTTTTTGAGAGGTTGGCTACGCGCAGTTGGTGCCGCGCATGCAG
GCCGCCGCCGGTGAAAGCGCGACGAAAAGAGGGTCTCACCCAATTGAAGT
CGCTTTATCTCCCTCCGCTTTTTTTATCGAAAAGTATCTATTTCCGCGAT
TTGACGCAAAACTGCGTAAGAGAATTGTACAAATACCGATTTCGCTTGGA
GAACAAGGCGGTTGGCTGCGAACCCCGTGTGCTACAGCAGCAGCGATTTC
GTCGCGTTGACTTTTATTAACAGTGGAGCAGTAAGAGTCTACAATGATGG
GACACGGTGTCAGAGAGCTAGGCTCCCTAGTAAATAGTGCTCTCATGGAG
CACTCGATTCGAATCACGCTTCAAGGAGGTACCATATTGATACTATCGTA
ATATTTTAAGAGAAGGGTTTCTGTTTTGGTTGCTGACTGTCGCCCCACGC
CCCCCCCCCCCGCCGCGCGCGTTTTGCTTTTTTTCGCTGCCCCTGCCTGC
GTTCGCAGCTGACCGCTCAGTTCACGGCGGTGGGGGGGCGGAACTTTCTG
TCCGAGCTGGCTAGGCGGGAAGCGAAGAATGAGCAGTTTCAGTTCCTGAA
GCACACGCACGCGCTCTTCAGCTACTTTACGAGGTGTGTGCTACTTATTT
TCACGTTGTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig8712:261..5621-

>mRNA_S-dermatodea_contig8712.16853.1 ID=mRNA_S-dermatodea_contig8712.16853.1|Name=mRNA_S-dermatodea_contig8712.16853.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1452bp|location=Sequence derived from alignment at S-dermatodea_contig8712:261..5621- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCCGAAGCCGCCCTTTCAAATGGGGGCACGGCGGGGGAGGAGGCCGGGGT
GGGGGAGGAAGGGGCGGGGGCAGGCGACAGTGGCGTGGAGCAGCCGTATC
AGGGAAAGGCCGAAGCCGCCCTTTCAAATGGGGGCACGGCGGGGGAGGAG
GCCGGGGTGGGGGAGGAAGGGGCGGGGGCAGGCGACAGTGGCGTGGAGCA
GCCGTATCAGGGAAAGGTGAAGGGCATAATCTACCCCCCTCCCGACATCC
GAGCGATCGTCGACAAGACGGCGCGCTTCGTGGCTAAGAACGGTAAGAGC
TTCGAGGAGCGTATCCAGGCCAGCGAGGAGGGGAAGAGTGCAAAGTTCAA
CTTCATGCGGCCCCACGACCCTTACTACGCGTACTACGAGTTCAAGATCA
GGGATTTCGAGGAGAACGGGGATGCGCCCAAGCCGGTGAAGGGCATAATC
TACCCCCCTCCCGACATCCGAGCGATCGTCGACAAGACGGCGCGCTTCGT
GGCTAAGAACGGTAAGAGCTTCGAGGAGCGTATCCAGGCCAGCGAGGAGG
GGAAGAGTGCAAAGTTCAACTTCATGCGGCCCCACGACCCTTACTACGCG
TACTACGAGTTCAAGATCAGGGATTTCGAGGAGAACGGGGATGCGCCCAA
GCCGGCCCCGGCCAAGCCGGTCGCGACGGAAGCCGAAGGGGATGGGGATG
GAGGGGAGGACGAGGGCGGCGCGGCGGCGGCCGGCGCTGGAGATTTCAAG
ACCGCTCCCTCGTCGGTCTCTCGAAAGGCCCCGGCCAAGCCGGTCGCGAC
GGAAGCCGAAGGGGATGGGGATGGAGGGGAGGACGAGGGCGGCGCGGCGG
CGGCCGGCGCTGGAGATTTCAAGACCGCTCCCTCGTCGGTCTCTCGAAAG
GCGGTGATGGCGCCCATCGCGAAGGCGGCCAAGTCTCTCAACAAGAGCAC
CCCGCCGCGGTCGTTCGAGTTCAGCGTCGGGCATCCCACAGGGCTGACGG
CGCTCGACGTGGACCTTATCAAGGCGGTGATGGCGCCCATCGCGAAGGCG
GCCAAGTCTCTCAACAAGAGCACCCCGCCGCGGTCGTTCGAGTTCAGCGT
CGGGCATCCCACAGGGCTGACGGCGCTCGACGTGGACCTTATCAAGCTGA
CCGCTCAGTTCACGGCGGTGGGGGGGCGGAACTTTCTGTCCGAGCTGGCT
AGGCGGGAAGCGAAGAATGAGCAGTTTCAGTTCCTGAAGCACACGCACGC
GCTCTTCAGCTACTTTACGAGGTGTGTGCTACTTATTTTCACGTTGTGAC
TGACCGCTCAGTTCACGGCGGTGGGGGGGCGGAACTTTCTGTCCGAGCTG
GCTAGGCGGGAAGCGAAGAATGAGCAGTTTCAGTTCCTGAAGCACACGCA
CGCGCTCTTCAGCTACTTTACGAGGTGTGTGCTACTTATTTTCACGTTGT
GA
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