mRNA_S-dermatodea_contig8701.16840.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8701.16840.1
Unique NamemRNA_S-dermatodea_contig8701.16840.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig8701.16840.1 vs. uniprot
Match: A0A6H5KLP2_9PHAE (J domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KLP2_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 2.900e-30
Identity = 57/80 (71.25%), Postives = 68/80 (85.00%), Query Frame = 1
Query:    1 MAVELTKEEEKADWYGVLGLEVSADESGINKAFKKLSLRWHPDKNGGSQEAHDMFMRVKEAKLFLMDGKKRRLYDEKRAA 240
            MA EL+KEEE  DWY VLGL+V A +  +NKAFKK+SL WHPDKNGGS+EAH  FM++KEAK+FL+DGKKR LYD+KRAA
Sbjct:    1 MADELSKEEEATDWYVVLGLDVGASDKDVNKAFKKMSLVWHPDKNGGSEEAHAKFMKIKEAKIFLLDGKKRGLYDQKRAA 80          
BLAST of mRNA_S-dermatodea_contig8701.16840.1 vs. uniprot
Match: A0A6A4GQE1_9AGAR (DnaJ-domain-containing protein n=1 Tax=Gymnopus androsaceus JB14 TaxID=1447944 RepID=A0A6A4GQE1_9AGAR)

HSP 1 Score: 72.4 bits (176), Expect = 1.900e-14
Identity = 31/64 (48.44%), Postives = 48/64 (75.00%), Query Frame = 1
Query:   37 DWYGVLGLEVSADESGINKAFKKLSLRWHPDKNGGSQEAHDMFMRVKEAKLFLMDGKKRRLYDE 228
            D+Y +LG++ +ADE+ I KA+KK++L+WHPD+N GS+EA + F  + EA   L D KKR +Y++
Sbjct:    4 DYYKLLGIDKNADENAIRKAYKKMALKWHPDRNNGSREASEKFKEISEAFEVLSDKKKRTIYNQ 67          
BLAST of mRNA_S-dermatodea_contig8701.16840.1 vs. uniprot
Match: A0A7S3YID6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YID6_HETAK)

HSP 1 Score: 72.4 bits (176), Expect = 2.510e-14
Identity = 33/67 (49.25%), Postives = 50/67 (74.63%), Query Frame = 1
Query:   34 ADWYGVLGLEVSADESGINKAFKKLSLRWHPDKNGGSQEAHDMFMRVKEAKLFLMDGKKRRLYDEKR 234
            AD+Y +LG++  A E  I+ A+KKL+L++HPDKN  ++ A  MFM++K+A+ FL+D  KR  YD+KR
Sbjct:   11 ADYYSILGVDKDAPEKKISTAYKKLALKYHPDKNPNNEAAAAMFMKIKQAQAFLLDKDKRAKYDKKR 77          
BLAST of mRNA_S-dermatodea_contig8701.16840.1 vs. uniprot
Match: A0A6A4HDS6_9AGAR (DnaJ-domain-containing protein n=1 Tax=Gymnopus androsaceus JB14 TaxID=1447944 RepID=A0A6A4HDS6_9AGAR)

HSP 1 Score: 72.4 bits (176), Expect = 5.550e-14
Identity = 31/64 (48.44%), Postives = 48/64 (75.00%), Query Frame = 1
Query:   37 DWYGVLGLEVSADESGINKAFKKLSLRWHPDKNGGSQEAHDMFMRVKEAKLFLMDGKKRRLYDE 228
            D+Y +LG++ +ADE+ I KA+KK++L+WHPD+N GS+EA + F  + EA   L D KKR +Y++
Sbjct:    4 DYYKLLGIDKNADENAIRKAYKKMALKWHPDRNNGSREASEKFKEISEAFEVLSDKKKRTIYNQ 67          
BLAST of mRNA_S-dermatodea_contig8701.16840.1 vs. uniprot
Match: A0A6A4HY09_9AGAR (DnaJ-domain-containing protein n=2 Tax=Gymnopus androsaceus JB14 TaxID=1447944 RepID=A0A6A4HY09_9AGAR)

HSP 1 Score: 73.9 bits (180), Expect = 1.230e-13
Identity = 33/64 (51.56%), Postives = 46/64 (71.88%), Query Frame = 1
Query:   37 DWYGVLGLEVSADESGINKAFKKLSLRWHPDKNGGSQEAHDMFMRVKEAKLFLMDGKKRRLYDE 228
            D+Y +LG++ SADE+ I KA+KK++L+WHPD+N GS+EA   F  + EA   L D  KR +YDE
Sbjct:    4 DYYKLLGIDKSADENAIKKAYKKMALKWHPDRNNGSEEASQKFKEISEAFEVLSDKNKRAVYDE 67          
BLAST of mRNA_S-dermatodea_contig8701.16840.1 vs. uniprot
Match: A0A0C3KYA1_9AGAM (J domain-containing protein n=1 Tax=Tulasnella calospora MUT 4182 TaxID=1051891 RepID=A0A0C3KYA1_9AGAM)

HSP 1 Score: 69.7 bits (169), Expect = 2.060e-13
Identity = 30/63 (47.62%), Postives = 44/63 (69.84%), Query Frame = 1
Query:   37 DWYGVLGLEVSADESGINKAFKKLSLRWHPDKNGGSQEAHDMFMRVKEAKLFLMDGKKRRLYD 225
            D+Y +LG++  AD+  I KA+KK++L+WHPD+N GS+EA+  F  + EA   L D  KR +YD
Sbjct:    4 DYYALLGIDRKADDDAIKKAYKKMALKWHPDRNKGSEEANQKFKEISEAFEVLSDKNKREVYD 66          
BLAST of mRNA_S-dermatodea_contig8701.16840.1 vs. uniprot
Match: UPI001C7B5FBB (DnaJ-domain-containing protein n=1 Tax=Guyanagaster necrorhizus MCA 3950 TaxID=1450536 RepID=UPI001C7B5FBB)

HSP 1 Score: 73.2 bits (178), Expect = 2.130e-13
Identity = 32/64 (50.00%), Postives = 48/64 (75.00%), Query Frame = 1
Query:   37 DWYGVLGLEVSADESGINKAFKKLSLRWHPDKNGGSQEAHDMFMRVKEAKLFLMDGKKRRLYDE 228
            D+Y +LG++ +ADE+ I KA+KK++L+WHPD+NGGS+EA   F ++ EA   L D  KR +YD+
Sbjct:    4 DYYKLLGIDRNADENEIKKAYKKMALKWHPDRNGGSEEASKKFKQISEAFEVLSDKNKRAIYDQ 67          
BLAST of mRNA_S-dermatodea_contig8701.16840.1 vs. uniprot
Match: UPI000711E6CF (chaperone DnaJ n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI000711E6CF)

HSP 1 Score: 70.5 bits (171), Expect = 3.070e-13
Identity = 34/72 (47.22%), Postives = 50/72 (69.44%), Query Frame = 1
Query:   25 EEKADWYGVLGLEVSADESGINKAFKKLSLRWHPDKNGGSQEAHDMFMRVKEAKLFLMDGKKRRLYDEKRAA 240
            EE  D+Y +L +EV +DE  INKA++ L+ ++HPDKN G++ A ++F  +KEAK  L+D  KR +YD K  A
Sbjct:    4 EEFKDYYSLLEIEVESDERTINKAYRLLAKKYHPDKNKGNKNATELFKLIKEAKEILLDPAKRTIYDRKHKA 75          
BLAST of mRNA_S-dermatodea_contig8701.16840.1 vs. uniprot
Match: A0A067SYU5_GALM3 (J domain-containing protein n=1 Tax=Galerina marginata (strain CBS 339.88) TaxID=685588 RepID=A0A067SYU5_GALM3)

HSP 1 Score: 72.8 bits (177), Expect = 3.070e-13
Identity = 33/65 (50.77%), Postives = 47/65 (72.31%), Query Frame = 1
Query:   34 ADWYGVLGLEVSADESGINKAFKKLSLRWHPDKNGGSQEAHDMFMRVKEAKLFLMDGKKRRLYDE 228
            AD+Y +LG++ SA E  I KA+KK++L+WHPD+N GS+EA+  F  + EA   L DG KR +YD+
Sbjct:    4 ADYYKLLGIDKSATEDEIKKAYKKMALKWHPDRNKGSEEANRKFKEISEAFEVLSDGNKRTVYDQ 68          
BLAST of mRNA_S-dermatodea_contig8701.16840.1 vs. uniprot
Match: A0A4S8MWX2_DENBC (DnaJ-domain-containing protein n=1 Tax=Dendrothele bispora (strain CBS 962.96) TaxID=1314807 RepID=A0A4S8MWX2_DENBC)

HSP 1 Score: 72.8 bits (177), Expect = 3.270e-13
Identity = 33/65 (50.77%), Postives = 47/65 (72.31%), Query Frame = 1
Query:   34 ADWYGVLGLEVSADESGINKAFKKLSLRWHPDKNGGSQEAHDMFMRVKEAKLFLMDGKKRRLYDE 228
            AD+Y +LG++ SADE+ I KA+KK++L+WHPD+N GS+EA   F  + EA   L D  KR +YD+
Sbjct:   39 ADYYKLLGVDKSADENEIKKAYKKMALKWHPDRNAGSEEASKKFKEISEAFEVLSDKNKRTVYDQ 103          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8701.16840.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KLP2_9PHAE2.900e-3071.25J domain-containing protein n=2 Tax=Ectocarpus Tax... [more]
A0A6A4GQE1_9AGAR1.900e-1448.44DnaJ-domain-containing protein n=1 Tax=Gymnopus an... [more]
A0A7S3YID6_HETAK2.510e-1449.25Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A6A4HDS6_9AGAR5.550e-1448.44DnaJ-domain-containing protein n=1 Tax=Gymnopus an... [more]
A0A6A4HY09_9AGAR1.230e-1351.56DnaJ-domain-containing protein n=2 Tax=Gymnopus an... [more]
A0A0C3KYA1_9AGAM2.060e-1347.62J domain-containing protein n=1 Tax=Tulasnella cal... [more]
UPI001C7B5FBB2.130e-1350.00DnaJ-domain-containing protein n=1 Tax=Guyanagaste... [more]
UPI000711E6CF3.070e-1347.22chaperone DnaJ n=1 Tax=Blastocystis sp. subtype 4 ... [more]
A0A067SYU5_GALM33.070e-1350.77J domain-containing protein n=1 Tax=Galerina margi... [more]
A0A4S8MWX2_DENBC3.270e-1350.77DnaJ-domain-containing protein n=1 Tax=Dendrothele... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8701contigS-dermatodea_contig8701:8675..8914 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score122.5
Seed ortholog evalue9.1e-26
Seed eggNOG ortholog2880.D8LB96
KEGG koko:K09537
EggNOG free text desc.toxin transport
EggNOG OGsCOG2214@1,KOG0691@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03110
Hectar predicted targeting categoryother localisation
Exons1
Model size240
Cds size240
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925360.6260533-CDS-S-dermatodea_contig8701:8674..89141622925360.6260533-CDS-S-dermatodea_contig8701:8674..8914Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8701 8675..8914 +
1694079880.9964428-CDS-S-dermatodea_contig8701:8674..89141694079880.9964428-CDS-S-dermatodea_contig8701:8674..8914Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8701 8675..8914 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8701.16840.1prot_S-dermatodea_contig8701.16840.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8701 8675..8914 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8701.16840.1

>prot_S-dermatodea_contig8701.16840.1 ID=prot_S-dermatodea_contig8701.16840.1|Name=mRNA_S-dermatodea_contig8701.16840.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=80bp
MAVELTKEEEKADWYGVLGLEVSADESGINKAFKKLSLRWHPDKNGGSQE
AHDMFMRVKEAKLFLMDGKKRRLYDEKRAA
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mRNA from alignment at S-dermatodea_contig8701:8675..8914+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8701.16840.1 ID=mRNA_S-dermatodea_contig8701.16840.1|Name=mRNA_S-dermatodea_contig8701.16840.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=240bp|location=Sequence derived from alignment at S-dermatodea_contig8701:8675..8914+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCGGTGGAGCTGACGAAGGAGGAGGAGAAGGCGGACTGGTACGGCGT GCTGGGACTGGAGGTGAGCGCGGACGAGAGCGGCATTAACAAGGCGTTCA AGAAGCTTTCGCTGAGATGGCACCCCGACAAAAACGGGGGCAGCCAGGAG GCCCACGACATGTTCATGAGGGTCAAGGAGGCCAAGCTCTTCCTCATGGA CGGGAAGAAGAGGAGGCTGTACGACGAGAAGCGGGCGGCT
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Coding sequence (CDS) from alignment at S-dermatodea_contig8701:8675..8914+

>mRNA_S-dermatodea_contig8701.16840.1 ID=mRNA_S-dermatodea_contig8701.16840.1|Name=mRNA_S-dermatodea_contig8701.16840.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=480bp|location=Sequence derived from alignment at S-dermatodea_contig8701:8675..8914+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCGGTGGAGCTGACGAAGGAGGAGGAGAAGGCGGACTGGTACGGCGT
GCTGGGACTGGAGGTGAGCGCGGACGAGAGCGGCATTAACAAGGCGTTCA
AGAAGCTTTCGCTGAGATGGCACCCCGACAAAAACGGGGGCAGCCAGGAG
GCCCACGACATGTTCATGAGGGTCAAGGAGGCCAAGCTCTTCCTCATGGA
CGGGAAGAAGAGGAGGCTGTACGACGAGAAGCGGGCGGCTATGGCGGTGG
AGCTGACGAAGGAGGAGGAGAAGGCGGACTGGTACGGCGTGCTGGGACTG
GAGGTGAGCGCGGACGAGAGCGGCATTAACAAGGCGTTCAAGAAGCTTTC
GCTGAGATGGCACCCCGACAAAAACGGGGGCAGCCAGGAGGCCCACGACA
TGTTCATGAGGGTCAAGGAGGCCAAGCTCTTCCTCATGGACGGGAAGAAG
AGGAGGCTGTACGACGAGAAGCGGGCGGCT
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