mRNA_S-dermatodea_contig86752.16822.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig86752.16822.1
Unique NamemRNA_S-dermatodea_contig86752.16822.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig86752.16822.1 vs. uniprot
Match: A0A6H5KXC7_9PHAE (Fucosyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXC7_9PHAE)

HSP 1 Score: 50.4 bits (119), Expect = 8.180e-6
Identity = 22/38 (57.89%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:   37 QASDFKNPKALARYLLMLTEDDQAYEEYFKWRDDPVEE 150
            +ASDF +P  L ++L ML  +++AYE YFKWRDDP EE
Sbjct:  660 KASDFSSPAELGKHLKMLAANEEAYEAYFKWRDDPEEE 697
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BLAST of mRNA_S-dermatodea_contig86752.16822.1 vs. uniprot
Match: A0A6P4YMF0_BRABE (Fucosyltransferase n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4YMF0_BRABE)

HSP 1 Score: 49.3 bits (116), Expect = 2.080e-5
Identity = 21/40 (52.50%), Postives = 27/40 (67.50%), Query Frame = 1 
Query:   22 PSNGCQASDFKNPKALARYLLMLTEDDQAYEEYFKWRDDP 141
            P++     DF++PKALARY+  L EDD  Y +YFKWR  P
Sbjct:  328 PNSFIHVDDFESPKALARYIKTLNEDDAKYNQYFKWRTTP 367
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BLAST of mRNA_S-dermatodea_contig86752.16822.1 vs. uniprot
Match: D7G396_ECTSI (Fucosyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G396_ECTSI)

HSP 1 Score: 49.3 bits (116), Expect = 2.080e-5
Identity = 22/38 (57.89%), Postives = 28/38 (73.68%), Query Frame = 1 
Query:   37 QASDFKNPKALARYLLMLTEDDQAYEEYFKWRDDPVEE 150
            +ASDF +P  L  +L ML  +++AYE YFKWRDDP EE
Sbjct:  364 KASDFSSPADLGNHLKMLAANEEAYEAYFKWRDDPEEE 401
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BLAST of mRNA_S-dermatodea_contig86752.16822.1 vs. uniprot
Match: A0A7R8H1G8_LEPSM (Fucosyltransferase n=3 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=A0A7R8H1G8_LEPSM)

HSP 1 Score: 48.9 bits (115), Expect = 2.830e-5
Identity = 21/37 (56.76%), Postives = 26/37 (70.27%), Query Frame = 1 
Query:   22 PSNGCQASDFKNPKALARYLLMLTEDDQAYEEYFKWR 132
            P +     DFKNPKALA YL+ L ++D AY EYFKW+
Sbjct:  250 PHSFINVRDFKNPKALAEYLMYLDKNDTAYSEYFKWK 286
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig86752.16822.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KXC7_9PHAE8.180e-657.89Fucosyltransferase n=1 Tax=Ectocarpus sp. CCAP 131... [more]
A0A6P4YMF0_BRABE2.080e-552.50Fucosyltransferase n=1 Tax=Branchiostoma belcheri ... [more]
D7G396_ECTSI2.080e-557.89Fucosyltransferase n=1 Tax=Ectocarpus siliculosus ... [more]
A0A7R8H1G8_LEPSM2.830e-556.76Fucosyltransferase n=3 Tax=Lepeophtheirus salmonis... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig86752contigS-dermatodea_contig86752:485..640 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size156
Cds size156
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925358.7799878-CDS-S-dermatodea_contig86752:484..6401622925358.7799878-CDS-S-dermatodea_contig86752:484..640Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig86752 485..640 -
1694079879.5976102-CDS-S-dermatodea_contig86752:484..6401694079879.5976102-CDS-S-dermatodea_contig86752:484..640Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig86752 485..640 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig86752.16822.1prot_S-dermatodea_contig86752.16822.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig86752 485..640 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig86752.16822.1

>prot_S-dermatodea_contig86752.16822.1 ID=prot_S-dermatodea_contig86752.16822.1|Name=mRNA_S-dermatodea_contig86752.16822.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=52bp
NPTQPNSPSNGCQASDFKNPKALARYLLMLTEDDQAYEEYFKWRDDPVEE
EK
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mRNA from alignment at S-dermatodea_contig86752:485..640-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig86752.16822.1 ID=mRNA_S-dermatodea_contig86752.16822.1|Name=mRNA_S-dermatodea_contig86752.16822.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=156bp|location=Sequence derived from alignment at S-dermatodea_contig86752:485..640- (Saccorhiza dermatodea SderLu1190fm monoicous)
AACCCAACCCAACCTAACTCGCCATCTAATGGTTGCCAGGCGTCGGATTT
CAAGAACCCCAAAGCCCTCGCGAGGTATCTGCTCATGCTGACGGAAGACG
ACCAGGCGTATGAGGAGTACTTCAAGTGGAGGGATGATCCAGTAGAGGAG
GAGAAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig86752:485..640-

>mRNA_S-dermatodea_contig86752.16822.1 ID=mRNA_S-dermatodea_contig86752.16822.1|Name=mRNA_S-dermatodea_contig86752.16822.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=312bp|location=Sequence derived from alignment at S-dermatodea_contig86752:485..640- (Saccorhiza dermatodea SderLu1190fm monoicous)
AACCCAACCCAACCTAACTCGCCATCTAATGGTTGCCAGGCGTCGGATTT
CAAGAACCCCAAAGCCCTCGCGAGGTATCTGCTCATGCTGACGGAAGACG
ACCAGGCGTATGAGGAGTACTTCAAGTGGAGGGATGATCCAGTAGAGGAG
GAGAAGAACCCAACCCAACCTAACTCGCCATCTAATGGTTGCCAGGCGTC
GGATTTCAAGAACCCCAAAGCCCTCGCGAGGTATCTGCTCATGCTGACGG
AAGACGACCAGGCGTATGAGGAGTACTTCAAGTGGAGGGATGATCCAGTA
GAGGAGGAGAAG
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