mRNA_S-dermatodea_contig86722.16816.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig86722.16816.1
Unique NamemRNA_S-dermatodea_contig86722.16816.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig86722.16816.1 vs. uniprot
Match: D8LMR4_ECTSI (CRAL-TRIO domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMR4_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 9.060e-14
Identity = 31/37 (83.78%), Postives = 32/37 (86.49%), Query Frame = 1 
Query:    1 PAQMEKCYIINAPWVFYALWKGLAPLMSVNTAKKVQV 111
            P  MEKCYIINAPWVFYALWKGL PLMS  TAKKVQ+
Sbjct:  364 PEMMEKCYIINAPWVFYALWKGLQPLMSAGTAKKVQM 400
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BLAST of mRNA_S-dermatodea_contig86722.16816.1 vs. uniprot
Match: A0A6H5JNT5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNT5_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 4.300e-13
Identity = 30/37 (81.08%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:    1 PAQMEKCYIINAPWVFYALWKGLAPLMSVNTAKKVQV 111
            P  MEKCYIINAPWVFYALWKGL PLMS  TA KVQ+
Sbjct:  446 PEMMEKCYIINAPWVFYALWKGLQPLMSAGTANKVQM 482
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BLAST of mRNA_S-dermatodea_contig86722.16816.1 vs. uniprot
Match: A0A835YKX5_9STRA (CRAL-TRIO domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKX5_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 6.530e-8
Identity = 18/37 (48.65%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:    1 PAQMEKCYIINAPWVFYALWKGLAPLMSVNTAKKVQV 111
            P  M+ C+++NAPW+F+A++KG+ PLMS +T  KV++
Sbjct:   30 PELMDTCFLVNAPWIFFAVFKGVKPLMSAHTVAKVKL 66
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BLAST of mRNA_S-dermatodea_contig86722.16816.1 vs. uniprot
Match: A0A7S3USY2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3USY2_HETAK)

HSP 1 Score: 51.2 bits (121), Expect = 2.480e-6
Identity = 18/37 (48.65%), Postives = 28/37 (75.68%), Query Frame = 1 
Query:    1 PAQMEKCYIINAPWVFYALWKGLAPLMSVNTAKKVQV 111
            P  M +C I+NAPWVF+ LW+ + P++S ++A KV+V
Sbjct:   39 PEMMHRCIIVNAPWVFFTLWRVIKPMLSEHSANKVKV 75
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BLAST of mRNA_S-dermatodea_contig86722.16816.1 vs. uniprot
Match: A0A098VVB5_9MICR (CRAL-TRIO domain-containing protein n=1 Tax=Mitosporidium daphniae TaxID=1485682 RepID=A0A098VVB5_9MICR)

HSP 1 Score: 47.4 bits (111), Expect = 6.130e-5
Identity = 16/35 (45.71%), Postives = 26/35 (74.29%), Query Frame = 1 
Query:    1 PAQMEKCYIINAPWVFYALWKGLAPLMSVNTAKKV 105
            P  + +CY++NAPW+F+ALWK ++PL+    A K+
Sbjct:  301 PESLYRCYVLNAPWLFWALWKLVSPLLDPVVAAKI 335
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig86722.16816.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LMR4_ECTSI9.060e-1483.78CRAL-TRIO domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JNT5_9PHAE4.300e-1381.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YKX5_9STRA6.530e-848.65CRAL-TRIO domain-containing protein n=1 Tax=Tribon... [more]
A0A7S3USY2_HETAK2.480e-648.65Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A098VVB5_9MICR6.130e-545.71CRAL-TRIO domain-containing protein n=1 Tax=Mitosp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig86722contigS-dermatodea_contig86722:156..278 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.1
Seed ortholog evalue2.5e-10
Seed eggNOG ortholog2880.D8LMR4
EggNOG free text desc.macromolecule localization
EggNOG OGsKOG1471@1,KOG1471@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size123
Cds size114
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925358.4076235-UTR-S-dermatodea_contig86722:155..1641622925358.4076235-UTR-S-dermatodea_contig86722:155..164Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig86722 156..164 +
1694079879.3552597-UTR-S-dermatodea_contig86722:155..1641694079879.3552597-UTR-S-dermatodea_contig86722:155..164Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig86722 156..164 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925358.4189844-CDS-S-dermatodea_contig86722:164..2781622925358.4189844-CDS-S-dermatodea_contig86722:164..278Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig86722 165..278 +
1694079879.3708262-CDS-S-dermatodea_contig86722:164..2781694079879.3708262-CDS-S-dermatodea_contig86722:164..278Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig86722 165..278 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig86722.16816.1prot_S-dermatodea_contig86722.16816.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig86722 165..278 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig86722.16816.1

>prot_S-dermatodea_contig86722.16816.1 ID=prot_S-dermatodea_contig86722.16816.1|Name=mRNA_S-dermatodea_contig86722.16816.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=38bp
MEKCYIINAPWVFYALWKGLAPLMSVNTAKKVQVGAK*
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mRNA from alignment at S-dermatodea_contig86722:156..278+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig86722.16816.1 ID=mRNA_S-dermatodea_contig86722.16816.1|Name=mRNA_S-dermatodea_contig86722.16816.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=123bp|location=Sequence derived from alignment at S-dermatodea_contig86722:156..278+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCCGCACAGATGGAGAAATGCTACATCATCAACGCGCCGTGGGTGTTCTA
CGCGTTGTGGAAGGGGCTGGCTCCGCTCATGTCCGTCAACACCGCCAAAA
AAGTTCAGGTGGGTGCGAAGTAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig86722:156..278+

>mRNA_S-dermatodea_contig86722.16816.1 ID=mRNA_S-dermatodea_contig86722.16816.1|Name=mRNA_S-dermatodea_contig86722.16816.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=228bp|location=Sequence derived from alignment at S-dermatodea_contig86722:156..278+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGAGAAATGCTACATCATCAACGCGCCGTGGGTGTTCTACGCGTTGTG
GAAGGGGCTGGCTCCGCTCATGTCCGTCAACACCGCCAAAAAAGTTCAGG
TGGGTGCGAAGTAAATGGAGAAATGCTACATCATCAACGCGCCGTGGGTG
TTCTACGCGTTGTGGAAGGGGCTGGCTCCGCTCATGTCCGTCAACACCGC
CAAAAAAGTTCAGGTGGGTGCGAAGTAA
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