mRNA_S-dermatodea_contig86600.16807.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig86600.16807.1
Unique NamemRNA_S-dermatodea_contig86600.16807.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig86600.16807.1 vs. uniprot
Match: A0A6H5L5H7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5H7_9PHAE)

HSP 1 Score: 157 bits (398), Expect = 1.060e-41
Identity = 77/154 (50.00%), Postives = 108/154 (70.13%), Query Frame = 1 
Query:    4 YQEAKTRAQNLIKQDGRKRWRKALEQTCEQMGTDSRSFWQWTSTVAKWRPKESAAGDAQPVKDPDTGLLLTSEARISEAWQVHYGRLAADVTGNSRKSDRWKHWNHAPQRKPLDKLNDAITEAEVMAALAHLKRNKAAGSDGIPADFLKLAQQE 465
            Y EA+ +A+ L+++D R+ W KAL    EQ+ +D ++ W + S VA W+ K+S+ G  QPV+ PD+  LLTS   IS AW+ HY RLAADVTGNSRKSD+W  W  APQR+ + +L+  I   E++ ALA +KR+K+ G+DG+PADFL+LA  E
Sbjct:  382 YHEARMKAERLVRKDRRRAWTKALCTASEQLRSDPKAAWHFMSAVAGWKRKDSSGG-LQPVQHPDSRALLTSANDISAAWRTHYQRLAADVTGNSRKSDKWNAWRAAPQRRHMTELDGPILREEMVEALARIKRHKSPGNDGVPADFLELAGGE 534
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BLAST of mRNA_S-dermatodea_contig86600.16807.1 vs. uniprot
Match: A0A498SLY1_ACAVI (Reverse transcriptase domain-containing protein n=1 Tax=Acanthocheilonema viteae TaxID=6277 RepID=A0A498SLY1_ACAVI)

HSP 1 Score: 75.9 bits (185), Expect = 4.290e-13
Identity = 49/157 (31.21%), Postives = 80/157 (50.96%), Query Frame = 1 
Query:    4 YQEAKTRAQNLIKQDGRKRWRKALEQTCEQMGTDSRSFWQWTSTVA--KWRPKESAAGDAQPVKDPDTGLLLTSEARISEAWQVHYGRLAADVTGNSRKSDRWKHWN-HAPQRKPLDKLNDAITEAEVMAALAHLKRNKAAGSDGIPADFLKLAQQE 465
            Y++A+    NLIK + + +W   +    E    + R F++W   +   K  PK        P+KD + G+L  +  +I+E W+ HY  L  D TG+S+  + W  +  H   R  ++  N   + +E++ A+  L  NKAAG DGIPA+F KL   +
Sbjct:  244 YKKARKGVTNLIKTEKKNKWFNHIANGAEFRKHEPRMFFRWLKNLVGVKSYPKLG------PLKDKN-GVLQVTPEKIAEVWREHYRNLFEDSTGHSKNKEYWSKFPIHI--RSTVELSNIPFSWSEIVLAVRSLSTNKAAGPDGIPAEFFKLINND 391
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig86600.16807.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L5H7_9PHAE1.060e-4150.00Reverse transcriptase domain-containing protein n=... [more]
A0A498SLY1_ACAVI4.290e-1331.21Reverse transcriptase domain-containing protein n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig86600contigS-dermatodea_contig86600:14..481 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size468
Cds size468
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925357.818525-CDS-S-dermatodea_contig86600:13..4811622925357.818525-CDS-S-dermatodea_contig86600:13..481Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig86600 14..481 -
1694079878.9767568-CDS-S-dermatodea_contig86600:13..4811694079878.9767568-CDS-S-dermatodea_contig86600:13..481Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig86600 14..481 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig86600.16807.1prot_S-dermatodea_contig86600.16807.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig86600 14..481 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig86600.16807.1

>prot_S-dermatodea_contig86600.16807.1 ID=prot_S-dermatodea_contig86600.16807.1|Name=mRNA_S-dermatodea_contig86600.16807.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=156bp
EYQEAKTRAQNLIKQDGRKRWRKALEQTCEQMGTDSRSFWQWTSTVAKWR
PKESAAGDAQPVKDPDTGLLLTSEARISEAWQVHYGRLAADVTGNSRKSD
RWKHWNHAPQRKPLDKLNDAITEAEVMAALAHLKRNKAAGSDGIPADFLK
LAQQES
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mRNA from alignment at S-dermatodea_contig86600:14..481-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig86600.16807.1 ID=mRNA_S-dermatodea_contig86600.16807.1|Name=mRNA_S-dermatodea_contig86600.16807.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=468bp|location=Sequence derived from alignment at S-dermatodea_contig86600:14..481- (Saccorhiza dermatodea SderLu1190fm monoicous)
GAGTACCAGGAGGCCAAGACGCGGGCCCAGAACCTGATAAAGCAGGATGG
GAGGAAGAGATGGAGAAAAGCGCTGGAGCAGACCTGCGAACAGATGGGGA
CAGACTCCAGAAGCTTCTGGCAGTGGACTTCGACGGTAGCAAAATGGCGG
CCGAAAGAGAGCGCCGCGGGGGACGCACAGCCAGTGAAAGACCCGGATAC
GGGACTGTTGCTGACCTCAGAAGCGCGCATTAGCGAAGCGTGGCAAGTGC
ATTATGGGCGACTGGCGGCCGATGTGACTGGCAATAGCAGGAAGTCGGAC
CGGTGGAAACACTGGAACCATGCGCCACAGCGCAAACCGCTCGATAAGCT
AAATGACGCGATCACTGAGGCAGAAGTAATGGCAGCTCTGGCGCACCTGA
AACGCAATAAGGCTGCAGGGAGTGATGGCATACCCGCGGATTTTCTAAAA
TTAGCCCAGCAGGAAAGT
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Coding sequence (CDS) from alignment at S-dermatodea_contig86600:14..481-

>mRNA_S-dermatodea_contig86600.16807.1 ID=mRNA_S-dermatodea_contig86600.16807.1|Name=mRNA_S-dermatodea_contig86600.16807.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=936bp|location=Sequence derived from alignment at S-dermatodea_contig86600:14..481- (Saccorhiza dermatodea SderLu1190fm monoicous)
GAGTACCAGGAGGCCAAGACGCGGGCCCAGAACCTGATAAAGCAGGATGG
GAGGAAGAGATGGAGAAAAGCGCTGGAGCAGACCTGCGAACAGATGGGGA
CAGACTCCAGAAGCTTCTGGCAGTGGACTTCGACGGTAGCAAAATGGCGG
CCGAAAGAGAGCGCCGCGGGGGACGCACAGCCAGTGAAAGACCCGGATAC
GGGACTGTTGCTGACCTCAGAAGCGCGCATTAGCGAAGCGTGGCAAGTGC
ATTATGGGCGACTGGCGGCCGATGTGACTGGCAATAGCAGGAAGTCGGAC
CGGTGGAAACACTGGAACCATGCGCCACAGCGCAAACCGCTCGATAAGCT
AAATGACGCGATCACTGAGGCAGAAGTAATGGCAGCTCTGGCGCACCTGA
AACGCAATAAGGCTGCAGGGAGTGATGGCATACCCGCGGATTTTCTAAAA
TTAGCCCAGCAGGAAAGTGAGTACCAGGAGGCCAAGACGCGGGCCCAGAA
CCTGATAAAGCAGGATGGGAGGAAGAGATGGAGAAAAGCGCTGGAGCAGA
CCTGCGAACAGATGGGGACAGACTCCAGAAGCTTCTGGCAGTGGACTTCG
ACGGTAGCAAAATGGCGGCCGAAAGAGAGCGCCGCGGGGGACGCACAGCC
AGTGAAAGACCCGGATACGGGACTGTTGCTGACCTCAGAAGCGCGCATTA
GCGAAGCGTGGCAAGTGCATTATGGGCGACTGGCGGCCGATGTGACTGGC
AATAGCAGGAAGTCGGACCGGTGGAAACACTGGAACCATGCGCCACAGCG
CAAACCGCTCGATAAGCTAAATGACGCGATCACTGAGGCAGAAGTAATGG
CAGCTCTGGCGCACCTGAAACGCAATAAGGCTGCAGGGAGTGATGGCATA
CCCGCGGATTTTCTAAAATTAGCCCAGCAGGAAAGT
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