mRNA_S-dermatodea_contig86423.16792.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig86423.16792.1
Unique NamemRNA_S-dermatodea_contig86423.16792.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig86423.16792.1 vs. uniprot
Match: D8LKC9_ECTSI (PIPK domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKC9_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 4.860e-14
Identity = 37/48 (77.08%), Postives = 40/48 (83.33%), Query Frame = 1 
Query:   25 IQVVRADAEFLARMKIMDYSLLTGIHDRVKPP--EGEQHQSPRRYSKL 162
            ++V RADAEFLARMKIMDYSLLTGIHDR   P  E E+HQSPRRYSK 
Sbjct:  686 LKVARADAEFLARMKIMDYSLLTGIHDRTAKPSDEEEKHQSPRRYSKF 733
[Close]
BLAST of mRNA_S-dermatodea_contig86423.16792.1 vs. uniprot
Match: A0A6H5KUU1_9PHAE (PIPK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUU1_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 9.070e-14
Identity = 38/47 (80.85%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:   28 QVVRADAEFLARMKIMDYSLLTGIHDRV-KPP-EGEQHQSPRRYSKL 162
            +V R DAEFLARMKIMDYSLLTGIHDR  KPP E E+HQSPRRYSK 
Sbjct:  965 EVARGDAEFLARMKIMDYSLLTGIHDRTAKPPDEEEKHQSPRRYSKF 1011
[Close]
BLAST of mRNA_S-dermatodea_contig86423.16792.1 vs. uniprot
Match: A0A836CAN4_9STRA (PIPK domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAN4_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 5.000e-6
Identity = 24/46 (52.17%), Postives = 30/46 (65.22%), Query Frame = 1 
Query:   25 IQVVRADAEFLARMKIMDYSLLTGIHDRVKPPEGEQHQSPRRYSKL 162
            ++V+  D  FLA+MKIMDYSLL GIHDR +PP+      P  Y K 
Sbjct:  589 LKVIENDVAFLAKMKIMDYSLLLGIHDRTRPPDANTSCRPH-YDKF 633
[Close]
BLAST of mRNA_S-dermatodea_contig86423.16792.1 vs. uniprot
Match: A0A0K0JP72_BRUMA (BMA-PPK-2 n=13 Tax=Onchocercidae TaxID=6296 RepID=A0A0K0JP72_BRUMA)

HSP 1 Score: 47.8 bits (112), Expect = 8.290e-5
Identity = 24/45 (53.33%), Postives = 29/45 (64.44%), Query Frame = 1 
Query:   22 LIQVVRADAEFLARMKIMDYSLLTGIHDRVKPPEGEQHQSPRRYS 156
            L+ ++R DAEFLARM +MDYSLL GIHD  K  +    Q P   S
Sbjct:  251 LLSMLRDDAEFLARMHLMDYSLLVGIHDMDKGEQEAAGQQPAEPS 295
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig86423.16792.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LKC9_ECTSI4.860e-1477.08PIPK domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KUU1_9PHAE9.070e-1480.85PIPK domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A836CAN4_9STRA5.000e-652.17PIPK domain-containing protein n=1 Tax=Tribonema m... [more]
A0A0K0JP72_BRUMA8.290e-553.33BMA-PPK-2 n=13 Tax=Onchocercidae TaxID=6296 RepID=... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig86423contigS-dermatodea_contig86423:235..399 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.7
Seed ortholog evalue1.5e-11
Seed eggNOG ortholog2880.D8LKC9
KEGG rclassRC00002,RC00078
KEGG koko:K00889
KEGG ReactionR03469
KEGG Pathwayko00562,ko01100,ko04011,ko04070,ko04072,ko04139,ko04144,ko04666,ko04810,ko05231,map00562,map01100,map04011,map04070,map04072,map04139,map04144,map04666,map04810,map05231
KEGG ModuleM00130
EggNOG free text desc.Translation initiation factor IF-2, N-terminal region
EggNOG OGsCOG5253@1,KOG0229@2759
EC2.7.1.68
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04131
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size165
Cds size165
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925357.103691-CDS-S-dermatodea_contig86423:234..3991622925357.103691-CDS-S-dermatodea_contig86423:234..399Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig86423 235..399 +
1694079878.6051292-CDS-S-dermatodea_contig86423:234..3991694079878.6051292-CDS-S-dermatodea_contig86423:234..399Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig86423 235..399 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig86423.16792.1prot_S-dermatodea_contig86423.16792.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig86423 235..399 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig86423.16792.1

>prot_S-dermatodea_contig86423.16792.1 ID=prot_S-dermatodea_contig86423.16792.1|Name=mRNA_S-dermatodea_contig86423.16792.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=55bp
RRRWNRNLIQVVRADAEFLARMKIMDYSLLTGIHDRVKPPEGEQHQSPRR
YSKL*
back to top

mRNA from alignment at S-dermatodea_contig86423:235..399+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig86423.16792.1 ID=mRNA_S-dermatodea_contig86423.16792.1|Name=mRNA_S-dermatodea_contig86423.16792.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=165bp|location=Sequence derived from alignment at S-dermatodea_contig86423:235..399+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGGCGGCGGTGGAATCGAAATTTAATCCAGGTGGTCCGAGCAGACGCGGA
GTTCCTGGCACGCATGAAGATCATGGACTACTCGCTGCTGACCGGGATAC
ACGACAGGGTGAAGCCGCCGGAAGGGGAGCAGCACCAGTCTCCAAGACGC
TACTCCAAGTTGTGA
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig86423:235..399+

>mRNA_S-dermatodea_contig86423.16792.1 ID=mRNA_S-dermatodea_contig86423.16792.1|Name=mRNA_S-dermatodea_contig86423.16792.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=330bp|location=Sequence derived from alignment at S-dermatodea_contig86423:235..399+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGGCGGCGGTGGAATCGAAATTTAATCCAGGTGGTCCGAGCAGACGCGGA
GTTCCTGGCACGCATGAAGATCATGGACTACTCGCTGCTGACCGGGATAC
ACGACAGGGTGAAGCCGCCGGAAGGGGAGCAGCACCAGTCTCCAAGACGC
TACTCCAAGTTGTGACGGCGGCGGTGGAATCGAAATTTAATCCAGGTGGT
CCGAGCAGACGCGGAGTTCCTGGCACGCATGAAGATCATGGACTACTCGC
TGCTGACCGGGATACACGACAGGGTGAAGCCGCCGGAAGGGGAGCAGCAC
CAGTCTCCAAGACGCTACTCCAAGTTGTGA
back to top