mRNA_S-dermatodea_contig8642.16791.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8642.16791.1
Unique NamemRNA_S-dermatodea_contig8642.16791.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8642.16791.1 vs. uniprot
Match: D7FZM3_ECTSI (HABP4_PAI-RBP1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZM3_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 9.730e-8
Identity = 51/87 (58.62%), Postives = 58/87 (66.67%), Query Frame = 3 
Query:  123 DGEATSPTEDGGPPRPRFQGGGRG----YRGEGRXXXXXXXXGYQGGQXXXGGYPAGXXXXXXRGNAGGPRSSAPLNLKDDEAFPSL 371
            +G+ ++P EDGGPPRPRF GGG G    +RGEGR        GYQG  XXX       XXXX RG+A   R+SAPLNLKDDEAFPSL
Sbjct:  420 EGDESTPAEDGGPPRPRFHGGGGGRGXXFRGEGR--------GYQGXXXXX-------XXXXYRGDA---RTSAPLNLKDDEAFPSL 488
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8642.16791.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FZM3_ECTSI9.730e-858.62HABP4_PAI-RBP1 domain-containing protein n=2 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8642contigS-dermatodea_contig8642:4838..5991 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size553
Cds size399
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8642.16791.1prot_S-dermatodea_contig8642.16791.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8642 4959..5958 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925357.0139606-UTR-S-dermatodea_contig8642:4837..49581622925357.0139606-UTR-S-dermatodea_contig8642:4837..4958Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8642 4838..4958 -
1694079878.5505717-UTR-S-dermatodea_contig8642:4837..49581694079878.5505717-UTR-S-dermatodea_contig8642:4837..4958Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8642 4838..4958 -
1622925357.0666323-UTR-S-dermatodea_contig8642:5958..59911622925357.0666323-UTR-S-dermatodea_contig8642:5958..5991Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8642 5959..5991 -
1694079878.593083-UTR-S-dermatodea_contig8642:5958..59911694079878.593083-UTR-S-dermatodea_contig8642:5958..5991Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8642 5959..5991 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925357.031714-CDS-S-dermatodea_contig8642:4958..50691622925357.031714-CDS-S-dermatodea_contig8642:4958..5069Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8642 4959..5069 -
1694079878.5620878-CDS-S-dermatodea_contig8642:4958..50691694079878.5620878-CDS-S-dermatodea_contig8642:4958..5069Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8642 4959..5069 -
1622925357.0453289-CDS-S-dermatodea_contig8642:5339..55631622925357.0453289-CDS-S-dermatodea_contig8642:5339..5563Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8642 5340..5563 -
1694079878.5766551-CDS-S-dermatodea_contig8642:5339..55631694079878.5766551-CDS-S-dermatodea_contig8642:5339..5563Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8642 5340..5563 -
1622925357.0551794-CDS-S-dermatodea_contig8642:5894..59581622925357.0551794-CDS-S-dermatodea_contig8642:5894..5958Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8642 5895..5958 -
1694079878.5848706-CDS-S-dermatodea_contig8642:5894..59581694079878.5848706-CDS-S-dermatodea_contig8642:5894..5958Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8642 5895..5958 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8642.16791.1

>prot_S-dermatodea_contig8642.16791.1 ID=prot_S-dermatodea_contig8642.16791.1|Name=mRNA_S-dermatodea_contig8642.16791.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=133bp
MAAARGVRAETAGATGAAVVAGAATTAKTRTVKLLPLPRMAAPRGLASKA
AAAVTVAKAVVKAVARAVDTREDRVAVAATQLEAAVEGTGVTPVAHAPAP
RSTSRTTRPSPPSRNPVTEEAHALTRQILSRQ*
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mRNA from alignment at S-dermatodea_contig8642:4838..5991-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8642.16791.1 ID=mRNA_S-dermatodea_contig8642.16791.1|Name=mRNA_S-dermatodea_contig8642.16791.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1154bp|location=Sequence derived from alignment at S-dermatodea_contig8642:4838..5991- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCTACGACCGCGACCGCCCCCAGCGCCCTGCTCATGGCAGCGGCGAGGGG
GGTGAGGGCGGAGACAGCGGGGGCAACTGGCGCAGCGGTGGTGGCAGGTG
CGTGTGGAAGGGAAACGGGGGGGGGGGGGGTCTGCCGTATTTCGGTACCG
GTATGATTGGTGTCTCACTGGTTTGTTGGTTTTTGTAGCTCATTCTTGCG
CCCCTCCGCCAGATCCTCTGCCCGCGCAACGCCGTATAGTACGGCGTTGC
GTCCGCCGCTCCTCTGACGAACACGAATATGACATGTCGTGACGGTGGCT
TCGACGGTGTTGGCGTGCGTGCATGTGTGCTTGGCCACGATGACAAACTG
ACACCTCTCCAAAACACCCACCGCCACCAATCATGCCCTGACACTAATCA
TTATTAATACCACTTGACCGGCACACAGGGGCAGCCACGACCGCGAAAAC
AAGGACGGTGAAGCTACTTCCCCTACCGAGGATGGCGGCCCCCCGAGGCC
TCGCTTCCAAGGCGGCGGCCGCGGTTACCGTGGCGAAGGCCGTGGTGAAG
GCCGTAGCGAGGGCCGTGGATACCAGGGAGGACAGGGTGGCGGTGGCGGC
TACCCAGCTGGAGGCGGCGGTGGAGGGTACAGGGGTAACGCCGGTGGCCC
ACGTAAGTCTTGATGCTCGTTGTCGGGCTCGTTTTTTTTGAGTGGGTGTT
AAAAGGTCAGGAAATATTAGTTAGTCCTCTCATGAGTTTTACCTCCTCAT
CAGCTCTCATCTCGTACCGAACAACAACCCCCTTAAAAGAGTAATGAATT
GAAGAATTTTATGTGTTTTGTTCCTTCATAAAACAAAAAAGGCTCTGGCG
TTGATTTGGACCCCATCCCTCCTTCCTCCCTTCCCCGCGCCCGTGTAATA
TTTTTGTTTTCGCTCTTTTCAGGCTCCAGCGCCCCGCTCAACCTCAAGGA
CGACGAGGCCTTCCCCTCCCTCTAGAAACCCCGTCACCGAGGAAGCTCAT
GCCCTGACGAGACAAATCTTGTCGAGGCAATGACTTCCGCTCTGAGGGTA
TAACATGAAAACCGTATGCTGGTGGGAAGACGGGGGTTTGGGGCTCCTTT
TGAAGCCCATTTTCCTTGATAGCCCGAGCTCTGCGTTTAGCAGCATTCTG
CGGT
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Coding sequence (CDS) from alignment at S-dermatodea_contig8642:4838..5991-

>mRNA_S-dermatodea_contig8642.16791.1 ID=mRNA_S-dermatodea_contig8642.16791.1|Name=mRNA_S-dermatodea_contig8642.16791.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=798bp|location=Sequence derived from alignment at S-dermatodea_contig8642:4838..5991- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCAGCGGCGAGGGGGGTGAGGGCGGAGACAGCGGGGGCAACTGGCGC
AGCGGTGGTGGCAGATGGCAGCGGCGAGGGGGGTGAGGGCGGAGACAGCG
GGGGCAACTGGCGCAGCGGTGGTGGCAGGGGCAGCCACGACCGCGAAAAC
AAGGACGGTGAAGCTACTTCCCCTACCGAGGATGGCGGCCCCCCGAGGCC
TCGCTTCCAAGGCGGCGGCCGCGGTTACCGTGGCGAAGGCCGTGGTGAAG
GCCGTAGCGAGGGCCGTGGATACCAGGGAGGACAGGGTGGCGGTGGCGGC
TACCCAGCTGGAGGCGGCGGTGGAGGGTACAGGGGTAACGCCGGTGGCCC
ACGGGCAGCCACGACCGCGAAAACAAGGACGGTGAAGCTACTTCCCCTAC
CGAGGATGGCGGCCCCCCGAGGCCTCGCTTCCAAGGCGGCGGCCGCGGTT
ACCGTGGCGAAGGCCGTGGTGAAGGCCGTAGCGAGGGCCGTGGATACCAG
GGAGGACAGGGTGGCGGTGGCGGCTACCCAGCTGGAGGCGGCGGTGGAGG
GTACAGGGGTAACGCCGGTGGCCCACGCTCCAGCGCCCCGCTCAACCTCA
AGGACGACGAGGCCTTCCCCTCCCTCTAGAAACCCCGTCACCGAGGAAGC
TCATGCCCTGACGAGACAAATCTTGTCGAGGCAATGAGCTCCAGCGCCCC
GCTCAACCTCAAGGACGACGAGGCCTTCCCCTCCCTCTAGAAACCCCGTC
ACCGAGGAAGCTCATGCCCTGACGAGACAAATCTTGTCGAGGCAATGA
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