mRNA_S-dermatodea_contig8636.16783.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8636.16783.1
Unique NamemRNA_S-dermatodea_contig8636.16783.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8636.16783.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8636contigS-dermatodea_contig8636:3016..4097 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1083
Cds size1080
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925356.446163-CDS-S-dermatodea_contig8636:3015..40951622925356.446163-CDS-S-dermatodea_contig8636:3015..4095Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8636 3016..4095 +
1694079878.2117653-CDS-S-dermatodea_contig8636:3015..40951694079878.2117653-CDS-S-dermatodea_contig8636:3015..4095Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8636 3016..4095 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8636.16783.1prot_S-dermatodea_contig8636.16783.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8636 3016..4095 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8636.16783.1

>prot_S-dermatodea_contig8636.16783.1 ID=prot_S-dermatodea_contig8636.16783.1|Name=mRNA_S-dermatodea_contig8636.16783.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=360bp
AGHGSVPTLRLSIGGAPVSSASLNFVACADASSKSRSALTAASPPARCPT
DNGAEPVSAGSSGLRLALAAVFLSVCSPTASEAEATVSPTPAVVRAARSS
KARSALAAASSTRCPKSSGAESSPFPTSAASPSAESSEPRSVFIADSSGC
SPTTSGAASSPSFTSTARSAASSTPMSAPTATSSTCPPSPSGAKSITSLT
SAEVSAGSSNSWTGGTAASSICSPVAGGGALSPSWTSALRFAASSNSRPA
LAAASSGCSPSPSGAEPRLSPISIAVSVATSSNLRQGLIIATTSPGCFPP
TSRAKPRPSSASTTSSATIVFSRSTPSLVPAKPTPSPSIVGVKFKPLAPT
SSPLRSTTWL
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mRNA from alignment at S-dermatodea_contig8636:3016..4097+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8636.16783.1 ID=mRNA_S-dermatodea_contig8636.16783.1|Name=mRNA_S-dermatodea_contig8636.16783.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1082bp|location=Sequence derived from alignment at S-dermatodea_contig8636:3016..4097+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCCGGGCACGGAAGCGTTCCTACTTTGCGGTTGTCGATCGGGGGTGCGCC
CGTCAGCTCAGCATCGCTGAATTTCGTCGCCTGTGCCGATGCGTCCTCCA
AGTCCAGGTCAGCACTAACCGCAGCATCCCCGCCGGCCCGGTGTCCGACA
GACAACGGAGCCGAGCCCGTTTCCGCTGGATCCTCTGGCTTGAGGTTGGC
GCTTGCCGCAGTCTTTTTGTCGGTCTGCTCTCCAACGGCTAGCGAAGCAG
AGGCGACTGTCTCTCCAACTCCCGCTGTTGTGCGCGCAGCTCGTTCTTCC
AAGGCGAGGTCGGCGCTTGCCGCAGCCTCATCCACCCGGTGTCCCAAATC
GAGCGGAGCCGAGTCGAGCCCCTTCCCGACCTCCGCCGCGTCGCCTTCCG
CTGAATCCTCCGAACCGAGGTCTGTATTCATCGCCGACTCTTCGGGCTGT
TCTCCCACAACGAGCGGAGCCGCGTCGAGCCCCTCCTTCACCTCCACGGC
GCGCTCCGCTGCCTCCTCTACGCCGATGTCGGCGCCCACCGCCACCTCTT
CGACCTGCCCTCCCTCACCGAGCGGGGCCAAGTCTATCACGTCTCTGACC
TCCGCCGAGGTTTCCGCTGGGTCCTCCAACTCGTGGACGGGGGGTACCGC
AGCCTCTTCCATTTGCTCTCCCGTAGCTGGCGGAGGCGCATTGAGTCCCT
CTTGGACCTCCGCGTTACGTTTCGCCGCGTCGTCTAACTCGAGGCCGGCG
CTTGCCGCAGCCTCGTCGGGATGTTCTCCTTCACCGAGCGGAGCCGAGCC
GAGGCTTTCCCCCATCTCCATCGCGGTCTCCGTCGCAACATCTTCCAACT
TGAGGCAAGGGCTTATCATCGCCACAACTTCTCCGGGCTGTTTTCCCCCA
ACGAGCAGAGCCAAGCCTAGGCCCTCCTCGGCCTCCACCACGTCTTCCGC
CACAATCGTCTTCTCTAGGTCGACGCCATCGCTTGTTCCCGCCAAACCGA
CACCTTCTCCTTCCATCGTCGGCGTGAAGTTCAAGCCTCTCGCACCGACG
TCCTCCCCACTCCGATCGACAACCTGGCTCTC
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Coding sequence (CDS) from alignment at S-dermatodea_contig8636:3016..4097+

>mRNA_S-dermatodea_contig8636.16783.1 ID=mRNA_S-dermatodea_contig8636.16783.1|Name=mRNA_S-dermatodea_contig8636.16783.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2160bp|location=Sequence derived from alignment at S-dermatodea_contig8636:3016..4097+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCCGGGCACGGAAGCGTTCCTACTTTGCGGTTGTCGATCGGGGGTGCGCC
CGTCAGCTCAGCATCGCTGAATTTCGTCGCCTGTGCCGATGCGTCCTCCA
AGTCCAGGTCAGCACTAACCGCAGCATCCCCGCCGGCCCGGTGTCCGACA
GACAACGGAGCCGAGCCCGTTTCCGCTGGATCCTCTGGCTTGAGGTTGGC
GCTTGCCGCAGTCTTTTTGTCGGTCTGCTCTCCAACGGCTAGCGAAGCAG
AGGCGACTGTCTCTCCAACTCCCGCTGTTGTGCGCGCAGCTCGTTCTTCC
AAGGCGAGGTCGGCGCTTGCCGCAGCCTCATCCACCCGGTGTCCCAAATC
GAGCGGAGCCGAGTCGAGCCCCTTCCCGACCTCCGCCGCGTCGCCTTCCG
CTGAATCCTCCGAACCGAGGTCTGTATTCATCGCCGACTCTTCGGGCTGT
TCTCCCACAACGAGCGGAGCCGCGTCGAGCCCCTCCTTCACCTCCACGGC
GCGCTCCGCTGCCTCCTCTACGCCGATGTCGGCGCCCACCGCCACCTCTT
CGACCTGCCCTCCCTCACCGAGCGGGGCCAAGTCTATCACGTCTCTGACC
TCCGCCGAGGTTTCCGCTGGGTCCTCCAACTCGTGGACGGGGGGTACCGC
AGCCTCTTCCATTTGCTCTCCCGTAGCTGGCGGAGGCGCATTGAGTCCCT
CTTGGACCTCCGCGTTACGTTTCGCCGCGTCGTCTAACTCGAGGCCGGCG
CTTGCCGCAGCCTCGTCGGGATGTTCTCCTTCACCGAGCGGAGCCGAGCC
GAGGCTTTCCCCCATCTCCATCGCGGTCTCCGTCGCAACATCTTCCAACT
TGAGGCAAGGGCTTATCATCGCCACAACTTCTCCGGGCTGTTTTCCCCCA
ACGAGCAGAGCCAAGCCTAGGCCCTCCTCGGCCTCCACCACGTCTTCCGC
CACAATCGTCTTCTCTAGGTCGACGCCATCGCTTGTTCCCGCCAAACCGA
CACCTTCTCCTTCCATCGTCGGCGTGAAGTTCAAGCCTCTCGCACCGACG
TCCTCCCCACTCCGATCGACAACCTGGCTCGCCGGGCACGGAAGCGTTCC
TACTTTGCGGTTGTCGATCGGGGGTGCGCCCGTCAGCTCAGCATCGCTGA
ATTTCGTCGCCTGTGCCGATGCGTCCTCCAAGTCCAGGTCAGCACTAACC
GCAGCATCCCCGCCGGCCCGGTGTCCGACAGACAACGGAGCCGAGCCCGT
TTCCGCTGGATCCTCTGGCTTGAGGTTGGCGCTTGCCGCAGTCTTTTTGT
CGGTCTGCTCTCCAACGGCTAGCGAAGCAGAGGCGACTGTCTCTCCAACT
CCCGCTGTTGTGCGCGCAGCTCGTTCTTCCAAGGCGAGGTCGGCGCTTGC
CGCAGCCTCATCCACCCGGTGTCCCAAATCGAGCGGAGCCGAGTCGAGCC
CCTTCCCGACCTCCGCCGCGTCGCCTTCCGCTGAATCCTCCGAACCGAGG
TCTGTATTCATCGCCGACTCTTCGGGCTGTTCTCCCACAACGAGCGGAGC
CGCGTCGAGCCCCTCCTTCACCTCCACGGCGCGCTCCGCTGCCTCCTCTA
CGCCGATGTCGGCGCCCACCGCCACCTCTTCGACCTGCCCTCCCTCACCG
AGCGGGGCCAAGTCTATCACGTCTCTGACCTCCGCCGAGGTTTCCGCTGG
GTCCTCCAACTCGTGGACGGGGGGTACCGCAGCCTCTTCCATTTGCTCTC
CCGTAGCTGGCGGAGGCGCATTGAGTCCCTCTTGGACCTCCGCGTTACGT
TTCGCCGCGTCGTCTAACTCGAGGCCGGCGCTTGCCGCAGCCTCGTCGGG
ATGTTCTCCTTCACCGAGCGGAGCCGAGCCGAGGCTTTCCCCCATCTCCA
TCGCGGTCTCCGTCGCAACATCTTCCAACTTGAGGCAAGGGCTTATCATC
GCCACAACTTCTCCGGGCTGTTTTCCCCCAACGAGCAGAGCCAAGCCTAG
GCCCTCCTCGGCCTCCACCACGTCTTCCGCCACAATCGTCTTCTCTAGGT
CGACGCCATCGCTTGTTCCCGCCAAACCGACACCTTCTCCTTCCATCGTC
GGCGTGAAGTTCAAGCCTCTCGCACCGACGTCCTCCCCACTCCGATCGAC
AACCTGGCTC
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