mRNA_S-dermatodea_contig8625.16772.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig8625.16772.1 vs. uniprot
Match: D8LJ78_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ78_ECTSI) HSP 1 Score: 233 bits (593), Expect = 3.000e-67 Identity = 181/436 (41.51%), Postives = 242/436 (55.50%), Query Frame = 1
Query: 79 ASKKAAQKLTNFRAYLHKSSVAACFVDLLEMTNDGIMTESGLYPSSQYRKSRNLRRGGF------IPPRGSRSPQGPSSGQSMLPDGPVARKSEGSQISPPSKTSRPHRRRPSTAIETHTRSLAE--VPDLPLTSRVPTRFAPRANCVRGGR---GRTSRAGNGLGLEGGLAAGVTALEIQRTHWAEDD-----GDWT-----------QGAVVRADDVTACPEINQSRPETE-------------GDGVLAR-RTTKASQWGTCGVPTP---KAAWGEATKGLSTTVSNVALTKSALHKAKELPHESDGRMAKASRVRNKLIEGERRRAEEVLVKNDNRKQAALGAAALEASQRGLMEAIMVVIATKRIWTAFSKLSAQYIEETSRTRAAQVIQRAYKAHSSRRVFKVLLSIRRLHVKLHIGICIRRKRLATTKI 1254
A+KKAAQKLTNFR YLHKSSVA CFVDLL+MT++G+MTE+GLYPSS+Y++SRN+R+ G PP G P Q+ L GP ++E + + H RRPSTA+ETH+ LA D PL++RV G R + N E + T L+I+RT W E G W QG +V A T PE N E E GD R T+ + T P P + AWG+A + LS++V+ VA K+A +A + + S R A+A+ VR LIEGE RA+ L KN+NRK+ A AAAL ASQRGL+EAI +V+ATKR+W KLS AA V+QRAYKA+++RR+FKVLL+IRR+H++L+IG+ IRRK++ + +
Sbjct: 15 ATKKAAQKLTNFRGYLHKSSVAGCFVDLLQMTDEGVMTEAGLYPSSRYKQSRNMRQSGLGTSSRSRPPTGLNGPNKNDKSQAPL-QGPSNNQAEDQRKNQRQPRGH-HGRRPSTALETHSAPLAAQLTRDAPLSARVGLSAGNSFAEAAGSRILSASSPSCHNNNKSEDIAGSRATILDIRRTQWVEGGSKQGVGGWLEADTAGQSQQHQGQLVGAVSATG-PETNDDAEEGEKEGRNGGGHDENGGDHPGGRCNTSSTTSTSTADSPKPFSRRVAWGKAMRELSSSVTKVAHMKTAADRA--MINSSHDRRARAASVRAGLIEGELLRAQAALAKNENRKRRATEAAALAASQRGLLEAISLVVATKRLWAGSLKLSQDREHLVHLGIAATVVQRAYKAYTNRRMFKVLLAIRRVHLRLYIGMNIRRKQMVRSAV 445
BLAST of mRNA_S-dermatodea_contig8625.16772.1 vs. uniprot
Match: A0A6H5JCP1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCP1_9PHAE) HSP 1 Score: 190 bits (482), Expect = 1.130e-51 Identity = 89/126 (70.63%), Postives = 113/126 (89.68%), Query Frame = 1
Query: 1162 VFKVLLSIRRLHVKLHIGICIRRKRLATTKIRWFLATGSGGAKARPRMVMRAFMYHVRRCQRAAKDWLACRAASIEAIGYLWERVEAETRRALGNELDRAKRVWMKRTLQTGQDSQMHGQWRELKV 1539
+FKVLLSIRR+H++L++G+ IRRK++A TK++WFLATGSGG KARPR V+RAFMY VRRCQRAA++WLACRAA+IEA+ LW+R+E+E RR LG+ELDRAKRVW+K L+TG+DS +HGQWRELK
Sbjct: 1 MFKVLLSIRRVHLRLYMGMNIRRKQMAVTKMQWFLATGSGGPKARPRKVIRAFMYQVRRCQRAAREWLACRAATIEAVCRLWDRIESEIRRGLGDELDRAKRVWVKNALRTGEDSHIHGQWRELKA 126
BLAST of mRNA_S-dermatodea_contig8625.16772.1 vs. uniprot
Match: A0A6H5JK95_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK95_9PHAE) HSP 1 Score: 148 bits (373), Expect = 3.300e-34 Identity = 150/403 (37.22%), Postives = 199/403 (49.38%), Query Frame = 1
Query: 79 ASKKAAQKLTNFRAYLHKSSVAACFVDLLEMTNDGIMTESGLYPSSQYRKSRNLRRGGFIPPRGSRS-PQGPSSGQ-----SMLP-DGPVARKSEGSQISPPSKTSRP----HRRRPSTAIETHTRSLAEVP--DLPLTSRVPTRFAPRANCVRGGR--GRTSRAGNGLGLEGGLAAGVTALEIQRTHWAEDD-----GDWT-----------QGAVVRADDVTACPEINQSRPETEGDGVLAR--------------RTTKASQWGTCGVPTP---KAAWGEATKGLSTTVSNVALTKSALHKAKELPHESDGRMAKASRVRNKLIEGERRRAEEVLVKNDNRKQAALGAAALEASQRGLMEAIMVVIATKRIWTAFSKLSAQYIEETSRTRAAQVIQRAYK 1143
A+KKAAQKL NFR C T G+MTE+GLYPSS+Y++SRN+R+ G SRS P +G+ S P GP +Q+ SK R H RRPSTA+ET + LA P D PL++RV G R G +S + E + T L+I+RT W E + G W QG V A T PE N E + +G +T+ + T P P + AWG+A + LS++V+ VA K+A +A + + S R A+A+ VR LIEGE RA+E L KN+NRK+ A AAAL ASQRGL+EAI +V+ATKR+W + KLS + AA V+QRAYK
Sbjct: 21 ATKKAAQKLANFR---------GC-----SSTASGVMTEAGLYPSSRYKQSRNMRQSGLGSSSRSRSRPPTRLNGRRKNDKSQAPLQGP-----SNNQVGDQSKNQRQQRGHHGRRPSTALETPSAPLAAQPTRDAPLSARVGLSAGNSFAEAAGARTLGASSPTCDNNKSEDIAGSRATILDIRRTQWVEGESKQGVGGWLEADTAGRSQQHQGQRVGAVSATG-PETNDGAEEGDKEGRNGXXXXXXXXXXXXGRCKTSSTTSTSTADSPKPFSRRVAWGKAMRELSSSVTKVAHMKTAADRA--MINSSHERRARAASVRAGLIEGELLRAQEALAKNENRKRQATEAAALAASQRGLLEAITLVVATKRLWASSLKLSQDREDLAHLGVAATVVQRAYK 401
BLAST of mRNA_S-dermatodea_contig8625.16772.1 vs. uniprot
Match: D8LJ77_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ77_ECTSI) HSP 1 Score: 82.8 bits (203), Expect = 2.990e-14 Identity = 37/54 (68.52%), Postives = 46/54 (85.19%), Query Frame = 1
Query: 1381 SIEAIGYLWERVEAETRRALGNELDRAKRVWMKRTLQTGQDSQMHGQWRELKVR 1542
SIEA+ LW+R+E+E RR LG+ELDRAKRVWMK L+TG+DS +HGQWRELK +
Sbjct: 34 SIEAVCRLWDRIESEIRRGLGDELDRAKRVWMKNALRTGEDSHIHGQWRELKAK 87 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8625.16772.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig8625.16772.1 >prot_S-dermatodea_contig8625.16772.1 ID=prot_S-dermatodea_contig8625.16772.1|Name=mRNA_S-dermatodea_contig8625.16772.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=519bp QVQLTLRSLNGPEVNAGTTRGAEAPAASKKAAQKLTNFRAYLHKSSVAACback to top mRNA from alignment at S-dermatodea_contig8625:589..6829- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig8625.16772.1 ID=mRNA_S-dermatodea_contig8625.16772.1|Name=mRNA_S-dermatodea_contig8625.16772.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=6241bp|location=Sequence derived from alignment at S-dermatodea_contig8625:589..6829- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig8625:589..6829- >mRNA_S-dermatodea_contig8625.16772.1 ID=mRNA_S-dermatodea_contig8625.16772.1|Name=mRNA_S-dermatodea_contig8625.16772.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=3114bp|location=Sequence derived from alignment at S-dermatodea_contig8625:589..6829- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |