mRNA_S-dermatodea_contig86237.16770.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig86237.16770.1
Unique NamemRNA_S-dermatodea_contig86237.16770.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig86237.16770.1 vs. uniprot
Match: A0A6H5JRI0_9PHAE (CID domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRI0_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 1.860e-43
Identity = 75/86 (87.21%), Postives = 80/86 (93.02%), Query Frame = 1 
Query:    1 RFPVRVMLSAFHLFHHYQWCGSVASFKFPPGKLPAVCLACLLAATKAEDCNAKLDTLLQQMRALEPILPPLEGIFPLGQRPMPKEV 258
            RFPVRVML+AFHLFHHYQWCGSV+SFKF P KLPAVCLACLLAATKAEDCNAKL+ +LQQM+ LEPILPPLEGIFPLGQRP  KEV
Sbjct:  399 RFPVRVMLTAFHLFHHYQWCGSVSSFKFSPPKLPAVCLACLLAATKAEDCNAKLEVMLQQMKQLEPILPPLEGIFPLGQRPTSKEV 484
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BLAST of mRNA_S-dermatodea_contig86237.16770.1 vs. uniprot
Match: D7FYQ1_ECTSI (CID domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYQ1_ECTSI)

HSP 1 Score: 153 bits (387), Expect = 1.950e-41
Identity = 73/86 (84.88%), Postives = 77/86 (89.53%), Query Frame = 1 
Query:    1 RFPVRVMLSAFHLFHHYQWCGSVASFKFPPGKLPAVCLACLLAATKAEDCNAKLDTLLQQMRALEPILPPLEGIFPLGQRPMPKEV 258
            RFP RVML+AFHLFHHYQWCG V+SFKF P KLPAVCLACLLAATKAEDCNAKL+ +L QMR LEPILPPLEGIFPLGQRP  KEV
Sbjct:  395 RFPGRVMLTAFHLFHHYQWCGLVSSFKFSPPKLPAVCLACLLAATKAEDCNAKLEVMLHQMRQLEPILPPLEGIFPLGQRPTSKEV 480
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BLAST of mRNA_S-dermatodea_contig86237.16770.1 vs. uniprot
Match: A0A836CAK0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAK0_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 3.350e-10
Identity = 33/70 (47.14%), Postives = 41/70 (58.57%), Query Frame = 1 
Query:    1 RFPVRVMLSAFHLFHHYQWCGSVASFKFPPGKLPAVCLACLLAATKAEDCNAKLDTLLQQMRALEPILPP 210
            R+  R MLSAFH FHH+ W    A   +P   LPAVCLACL  A KAED   ++D L+     ++  LPP
Sbjct:   18 RYGERAMLSAFHFFHHFHWVSLDAGQMWPATDLPAVCLACLHLAGKAEDTAFRIDYLMDIADQMKMALPP 87
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig86237.16770.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JRI0_9PHAE1.860e-4387.21CID domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FYQ1_ECTSI1.950e-4184.88CID domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A836CAK0_9STRA3.350e-1047.14Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig86237contigS-dermatodea_contig86237:336..593 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size258
Cds size240
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925355.5938714-UTR-S-dermatodea_contig86237:335..3531622925355.5938714-UTR-S-dermatodea_contig86237:335..353Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig86237 336..353 +
1694079877.6676478-UTR-S-dermatodea_contig86237:335..3531694079877.6676478-UTR-S-dermatodea_contig86237:335..353Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig86237 336..353 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925355.6038837-CDS-S-dermatodea_contig86237:353..5931622925355.6038837-CDS-S-dermatodea_contig86237:353..593Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig86237 354..593 +
1694079877.6779447-CDS-S-dermatodea_contig86237:353..5931694079877.6779447-CDS-S-dermatodea_contig86237:353..593Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig86237 354..593 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig86237.16770.1prot_S-dermatodea_contig86237.16770.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig86237 354..593 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig86237.16770.1

>prot_S-dermatodea_contig86237.16770.1 ID=prot_S-dermatodea_contig86237.16770.1|Name=mRNA_S-dermatodea_contig86237.16770.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=80bp
MLSAFHLFHHYQWCGSVASFKFPPGKLPAVCLACLLAATKAEDCNAKLDT
LLQQMRALEPILPPLEGIFPLGQRPMPKEV
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mRNA from alignment at S-dermatodea_contig86237:336..593+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig86237.16770.1 ID=mRNA_S-dermatodea_contig86237.16770.1|Name=mRNA_S-dermatodea_contig86237.16770.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=258bp|location=Sequence derived from alignment at S-dermatodea_contig86237:336..593+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGGTTTCCGGTGAGAGTGATGCTCTCGGCCTTCCACCTCTTCCATCACTA
CCAGTGGTGCGGATCCGTGGCATCCTTCAAGTTTCCCCCCGGCAAGCTCC
CCGCCGTCTGCCTCGCGTGCCTCTTGGCGGCCACGAAGGCGGAGGACTGC
AACGCTAAGCTCGACACCCTCCTGCAGCAAATGCGTGCGCTGGAGCCGAT
CCTGCCTCCGCTGGAAGGAATTTTCCCGCTGGGACAGCGCCCGATGCCAA
AGGAGGTA
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Coding sequence (CDS) from alignment at S-dermatodea_contig86237:336..593+

>mRNA_S-dermatodea_contig86237.16770.1 ID=mRNA_S-dermatodea_contig86237.16770.1|Name=mRNA_S-dermatodea_contig86237.16770.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=480bp|location=Sequence derived from alignment at S-dermatodea_contig86237:336..593+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCTCTCGGCCTTCCACCTCTTCCATCACTACCAGTGGTGCGGATCCGT
GGCATCCTTCAAGTTTCCCCCCGGCAAGCTCCCCGCCGTCTGCCTCGCGT
GCCTCTTGGCGGCCACGAAGGCGGAGGACTGCAACGCTAAGCTCGACACC
CTCCTGCAGCAAATGCGTGCGCTGGAGCCGATCCTGCCTCCGCTGGAAGG
AATTTTCCCGCTGGGACAGCGCCCGATGCCAAAGGAGGTAATGCTCTCGG
CCTTCCACCTCTTCCATCACTACCAGTGGTGCGGATCCGTGGCATCCTTC
AAGTTTCCCCCCGGCAAGCTCCCCGCCGTCTGCCTCGCGTGCCTCTTGGC
GGCCACGAAGGCGGAGGACTGCAACGCTAAGCTCGACACCCTCCTGCAGC
AAATGCGTGCGCTGGAGCCGATCCTGCCTCCGCTGGAAGGAATTTTCCCG
CTGGGACAGCGCCCGATGCCAAAGGAGGTA
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