mRNA_S-dermatodea_contig86044.16757.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig86044.16757.1
Unique NamemRNA_S-dermatodea_contig86044.16757.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig86044.16757.1 vs. uniprot
Match: A0A6H5K259_9PHAE (Endo/exonuclease/phosphatase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K259_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 4.590e-28
Identity = 65/141 (46.10%), Postives = 92/141 (65.25%), Query Frame = 1
Query:    7 GIHIIGIQEPRRDGVSSFSQEGYVVCCSGNKAGRNGGQG--GVGLAVKEA---TVRQGTCSQEYIDGRVLKVSFELMGRSKAVTFIIGYAPTEVERSVK--DVHAKNEFWKVIGGAVEEVPVTQQLIVLMDANARTGRRED 408
            G  +IG+QE RR+G  S + +GYV+  SG +AG    +G  GVG+A+KEA   +V +   + E I+ R++KV  ++ GR+  VTF++GYAPTE  R+    DV+AK+ FW  + G + EV     L+VLMDANARTGRR D
Sbjct:   11 GCDVIGLQETRREGQGSLAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEKGRTVECINPRLMKVRLQI-GRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDGEIREVHSRDHLVVLMDANARTGRRRD 150          
BLAST of mRNA_S-dermatodea_contig86044.16757.1 vs. uniprot
Match: A0A6H5KZE6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZE6_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 1.310e-27
Identity = 65/141 (46.10%), Postives = 90/141 (63.83%), Query Frame = 1
Query:    7 GIHIIGIQEPRRDGVSSFSQEGYVVCCSGNKAGRNGGQGG--VGLAVKEA---TVRQGTCSQEYIDGRVLKVSFELMGRSKAVTFIIGYAPTEVERSVK--DVHAKNEFWKVIGGAVEEVPVTQQLIVLMDANARTGRRED 408
            G  +IG+QE RR+G  S + +GYV+  SG +AG    +GG  VG+A+KEA   +V +   + E I  R++KV  ++ GR+  VTF++GYAPTE  RS    DV+AK+ FW  +  A+ EV     L+VLM ANARTGRR D
Sbjct:   42 GCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGGHGVGIAIKEAIWESVGEEGRTVECISPRLMKVRLQI-GRTCGVTFVVGYAPTETVRSTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMGANARTGRRRD 181          
BLAST of mRNA_S-dermatodea_contig86044.16757.1 vs. uniprot
Match: A0A6H5KQ63_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ63_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 1.610e-27
Identity = 66/141 (46.81%), Postives = 90/141 (63.83%), Query Frame = 1
Query:    7 GIHIIGIQEPRRDGVSSFSQEGYVVCCSGNKAGRNGGQG--GVGLAVKEA---TVRQGTCSQEYIDGRVLKVSFELMGRSKAVTFIIGYAPTEVERSVK--DVHAKNEFWKVIGGAVEEVPVTQQLIVLMDANARTGRRED 408
            G  +IG+QE RR+G  S + +GYV   SG +AG  G  G  GVG+A+KEA   +V +   + E I  R++KV  ++ GR+  VTF++GYAPTE  R+    DV+AK+ FW  +  A+ EV     L+VLMDANARTGRR D
Sbjct:   11 GCDVIGLQETRREGQGSIAHDGYVFIWSGARAGTKGKWGVHGVGIAIKEAMWQSVGEEGRTVECISPRLMKVRLQI-GRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRD 150          
BLAST of mRNA_S-dermatodea_contig86044.16757.1 vs. uniprot
Match: A0A6H5KP87_9PHAE (Endo/exonuclease/phosphatase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP87_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 3.630e-27
Identity = 62/138 (44.93%), Postives = 88/138 (63.77%), Query Frame = 1
Query:   16 IIGIQEPRRDGVSSFSQEGYVVCCSGNKAGRNGGQG--GVGLAVKEA---TVRQGTCSQEYIDGRVLKVSFELMGRSKAVTFIIGYAPTEVERSVK--DVHAKNEFWKVIGGAVEEVPVTQQLIVLMDANARTGRRED 408
            +IG+QE RR G  + + +GYV+  SG +AG    +G  GVG+A+KE    +V +G  + E I  R++KV  ++ GR+  VTF++GYAPTE  R+    DV+AK+ FW  +   + EV     L+VLMDANARTGRR D
Sbjct:   14 VIGLQETRRAGQGAITHDGYVIIWSGARAGTKDKRGVHGVGIAIKETMWDSVGEGGRTVECISPRLMKVRLQI-GRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRD 150          
BLAST of mRNA_S-dermatodea_contig86044.16757.1 vs. uniprot
Match: A0A6H5KBZ6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBZ6_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 5.320e-27
Identity = 64/139 (46.04%), Postives = 90/139 (64.75%), Query Frame = 1
Query:    7 GIHIIGIQEPRRDGVSSFSQEGYVVCCSGNKAGRNGGQG--GVGLAVKEA---TVRQGTCSQEYIDGRVLKVSFELMGRSKAVTFIIGYAPTEVERSVK--DVHAKNEFWKVIGGAVEEVPVTQQLIVLMDANARTGRR 402
            G  +IG+QE RR+G  S + +GYV+  SG +AG    +G  GVG+A+KEA   +V +   + E I  R++KV  ++ GR+  VTF++GYAPTE  R+    DV+AK+ FW  +  A+ EV     L+VLMDANARTGRR
Sbjct:   11 GCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQI-GRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRR 148          
BLAST of mRNA_S-dermatodea_contig86044.16757.1 vs. uniprot
Match: A0A6H5JVN7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVN7_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 5.820e-27
Identity = 66/141 (46.81%), Postives = 89/141 (63.12%), Query Frame = 1
Query:    7 GIHIIGIQEPRRDGVSSFSQEGYVVCCSGNKAGRNG--GQGGVGLAVKEA---TVRQGTCSQEYIDGRVLKVSFELMGRSKAVTFIIGYAPTEVERSVK--DVHAKNEFWKVIGGAVEEVPVTQQLIVLMDANARTGRRED 408
            G  +IG+QE RR+G  S + +GYV+  SG +AG     G+ GVG+A+KEA   TV +     E I  R++KV  ++ GR+  VTF++GYAPTE  R     DV+AK+ FW  +  A+ EV     L+VLMDANARTGRR D
Sbjct:  188 GCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGEQGVGIAIKEAMWETVGEEGRKVECISPRLMKVRLQI-GRTCGVTFVVGYAPTETVRITAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRD 327          
BLAST of mRNA_S-dermatodea_contig86044.16757.1 vs. uniprot
Match: A0A6H5L7A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7A7_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 7.920e-27
Identity = 65/141 (46.10%), Postives = 91/141 (64.54%), Query Frame = 1
Query:    7 GIHIIGIQEPRRDGVSSFSQEGYVVCCSGNKAGRNGGQG--GVGLAVKEA---TVRQGTCSQEYIDGRVLKVSFELMGRSKAVTFIIGYAPTEVERSVK--DVHAKNEFWKVIGGAVEEVPVTQQLIVLMDANARTGRRED 408
            G  +IG+QE RR+G  S + +GYV+  SG +AG    +G  GVG+A+KEA   +V +   + E I  R++KV  ++ GR+  VTF++GYAPTE  R+    DV+AK+ FW  +  A+ EV     L+VLMDANARTGRR D
Sbjct:   11 GCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQI-GRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRD 150          
BLAST of mRNA_S-dermatodea_contig86044.16757.1 vs. uniprot
Match: A0A6H5JMM5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMM5_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 9.510e-27
Identity = 63/136 (46.32%), Postives = 88/136 (64.71%), Query Frame = 1
Query:   16 IIGIQEPRRDGVSSFSQEGYVVCCSGNKAGRNGGQG--GVGLAVKEA---TVRQGTCSQEYIDGRVLKVSFELMGRSKAVTFIIGYAPTEVERSVK--DVHAKNEFWKVIGGAVEEVPVTQQLIVLMDANARTGRR 402
            +IG+QE RR+G  S + +GYV+  SG +AG    +G  GVG A+KEA   +V +   + E I  R++KV  ++ GR+  VTF++GYAPTE  R+    DV+AK+ FW  +  A+ EV     L+VLMDANARTGRR
Sbjct:   14 VIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGRAIKEAMWESVGEEGRTVECISPRLMKVRLQI-GRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRR 148          
BLAST of mRNA_S-dermatodea_contig86044.16757.1 vs. uniprot
Match: A0A6H5K6P8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6P8_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 1.090e-26
Identity = 64/141 (45.39%), Postives = 90/141 (63.83%), Query Frame = 1
Query:    7 GIHIIGIQEPRRDGVSSFSQEGYVVCCSGNKAGRNGGQG--GVGLAVKEA---TVRQGTCSQEYIDGRVLKVSFELMGRSKAVTFIIGYAPTEVERSVK--DVHAKNEFWKVIGGAVEEVPVTQQLIVLMDANARTGRRED 408
            G  ++G+QE RRDG  S   +GYV+  SG +AG    +G  GVG+A+KEA   +V +   + E I  R++KV  ++ GR+  VTF++GYAPTE  R+    DV+AK+ FW  +  A+ EV     L+VLMDANARTGR+ D
Sbjct:   58 GCDVVGLQENRRDGQGSIPHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQI-GRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLLVLMDANARTGRKRD 197          
BLAST of mRNA_S-dermatodea_contig86044.16757.1 vs. uniprot
Match: A0A6H5JM04_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM04_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 1.850e-26
Identity = 65/141 (46.10%), Postives = 90/141 (63.83%), Query Frame = 1
Query:    7 GIHIIGIQEPRRDGVSSFSQEGYVVCCSGNKAGRNGGQG--GVGLAVKEA---TVRQGTCSQEYIDGRVLKVSFELMGRSKAVTFIIGYAPTEVERSVK--DVHAKNEFWKVIGGAVEEVPVTQQLIVLMDANARTGRRED 408
            G  +IG+QE RR+G  S + +GYV+  SG +AG    +G  GVG+A+KEA   +V +   + E I  R++KV  ++ GR+  VTF++GYAPTE  R+    DV+AK+ FW     A+ EV     L+VLMDANARTGRR D
Sbjct:   11 GCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQI-GRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTAPDAAIREVHSRDHLVVLMDANARTGRRRD 150          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig86044.16757.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K259_9PHAE4.590e-2846.10Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5KZE6_9PHAE1.310e-2746.10Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5KQ63_9PHAE1.610e-2746.81Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KP87_9PHAE3.630e-2744.93Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5KBZ6_9PHAE5.320e-2746.04Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5JVN7_9PHAE5.820e-2746.81Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L7A7_9PHAE7.920e-2746.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMM5_9PHAE9.510e-2746.32Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K6P8_9PHAE1.090e-2645.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JM04_9PHAE1.850e-2646.10Endo/exonuclease/phosphatase domain-containing pro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig86044contigS-dermatodea_contig86044:265..672 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size408
Cds size408
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925354.7315168-CDS-S-dermatodea_contig86044:264..6721622925354.7315168-CDS-S-dermatodea_contig86044:264..672Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig86044 265..672 -
1694079877.1129298-CDS-S-dermatodea_contig86044:264..6721694079877.1129298-CDS-S-dermatodea_contig86044:264..672Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig86044 265..672 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig86044.16757.1prot_S-dermatodea_contig86044.16757.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig86044 265..672 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig86044.16757.1

>prot_S-dermatodea_contig86044.16757.1 ID=prot_S-dermatodea_contig86044.16757.1|Name=mRNA_S-dermatodea_contig86044.16757.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=136bp
ELGIHIIGIQEPRRDGVSSFSQEGYVVCCSGNKAGRNGGQGGVGLAVKEA
TVRQGTCSQEYIDGRVLKVSFELMGRSKAVTFIIGYAPTEVERSVKDVHA
KNEFWKVIGGAVEEVPVTQQLIVLMDANARTGRRED
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mRNA from alignment at S-dermatodea_contig86044:265..672-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig86044.16757.1 ID=mRNA_S-dermatodea_contig86044.16757.1|Name=mRNA_S-dermatodea_contig86044.16757.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=408bp|location=Sequence derived from alignment at S-dermatodea_contig86044:265..672- (Saccorhiza dermatodea SderLu1190fm monoicous)
GAACTTGGGATTCACATCATAGGGATACAAGAACCTCGACGCGACGGGGT ATCTTCGTTCTCACAAGAGGGATACGTGGTGTGTTGTAGCGGAAACAAGG CGGGGAGAAACGGTGGGCAGGGTGGCGTTGGACTGGCAGTGAAGGAGGCC ACCGTACGCCAAGGCACGTGCAGCCAGGAGTACATCGACGGCCGTGTGTT GAAGGTGTCCTTCGAGCTGATGGGCAGGTCCAAAGCTGTCACTTTTATAA TCGGCTACGCCCCAACTGAGGTGGAGAGATCTGTTAAGGACGTGCATGCT AAGAATGAGTTCTGGAAGGTGATTGGAGGAGCTGTGGAGGAGGTTCCTGT GACTCAGCAGTTGATTGTGTTGATGGACGCCAATGCACGCACGGGGCGGA GGGAGGAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig86044:265..672-

>mRNA_S-dermatodea_contig86044.16757.1 ID=mRNA_S-dermatodea_contig86044.16757.1|Name=mRNA_S-dermatodea_contig86044.16757.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=816bp|location=Sequence derived from alignment at S-dermatodea_contig86044:265..672- (Saccorhiza dermatodea SderLu1190fm monoicous)
GAACTTGGGATTCACATCATAGGGATACAAGAACCTCGACGCGACGGGGT
ATCTTCGTTCTCACAAGAGGGATACGTGGTGTGTTGTAGCGGAAACAAGG
CGGGGAGAAACGGTGGGCAGGGTGGCGTTGGACTGGCAGTGAAGGAGGCC
ACCGTACGCCAAGGCACGTGCAGCCAGGAGTACATCGACGGCCGTGTGTT
GAAGGTGTCCTTCGAGCTGATGGGCAGGTCCAAAGCTGTCACTTTTATAA
TCGGCTACGCCCCAACTGAGGTGGAGAGATCTGTTAAGGACGTGCATGCT
AAGAATGAGTTCTGGAAGGTGATTGGAGGAGCTGTGGAGGAGGTTCCTGT
GACTCAGCAGTTGATTGTGTTGATGGACGCCAATGCACGCACGGGGCGGA
GGGAGGACGAACTTGGGATTCACATCATAGGGATACAAGAACCTCGACGC
GACGGGGTATCTTCGTTCTCACAAGAGGGATACGTGGTGTGTTGTAGCGG
AAACAAGGCGGGGAGAAACGGTGGGCAGGGTGGCGTTGGACTGGCAGTGA
AGGAGGCCACCGTACGCCAAGGCACGTGCAGCCAGGAGTACATCGACGGC
CGTGTGTTGAAGGTGTCCTTCGAGCTGATGGGCAGGTCCAAAGCTGTCAC
TTTTATAATCGGCTACGCCCCAACTGAGGTGGAGAGATCTGTTAAGGACG
TGCATGCTAAGAATGAGTTCTGGAAGGTGATTGGAGGAGCTGTGGAGGAG
GTTCCTGTGACTCAGCAGTTGATTGTGTTGATGGACGCCAATGCACGCAC
GGGGCGGAGGGAGGAC
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