mRNA_S-dermatodea_contig85922.16750.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig85922.16750.1
Unique NamemRNA_S-dermatodea_contig85922.16750.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig85922.16750.1 vs. uniprot
Match: D7FNB6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNB6_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 3.350e-22
Identity = 50/53 (94.34%), Postives = 51/53 (96.23%), Query Frame = 1 
Query:    1 KQGLFQSIGLYSIFGKKLVEHLWLLWELVLTASPTLVVGSSVGASSAAILGMV 159
            KQGLFQSIGLYSIFGKKLVEHLWLLWELVLT  PTLV+GSSVGASSAAILGMV
Sbjct:  936 KQGLFQSIGLYSIFGKKLVEHLWLLWELVLTGGPTLVLGSSVGASSAAILGMV 988
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BLAST of mRNA_S-dermatodea_contig85922.16750.1 vs. uniprot
Match: A0A6H5KGC5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGC5_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 3.350e-22
Identity = 50/53 (94.34%), Postives = 51/53 (96.23%), Query Frame = 1 
Query:    1 KQGLFQSIGLYSIFGKKLVEHLWLLWELVLTASPTLVVGSSVGASSAAILGMV 159
            KQGLFQSIGLYSIFGKKLVEHLWLLWELVLT  PTLV+GSSVGASSAAILGMV
Sbjct: 1117 KQGLFQSIGLYSIFGKKLVEHLWLLWELVLTGGPTLVLGSSVGASSAAILGMV 1169
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BLAST of mRNA_S-dermatodea_contig85922.16750.1 vs. uniprot
Match: A0A835Z9L9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9L9_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 5.400e-13
Identity = 33/53 (62.26%), Postives = 44/53 (83.02%), Query Frame = 1 
Query:    1 KQGLFQSIGLYSIFGKKLVEHLWLLWELVLTASPTLVVGSSVGASSAAILGMV 159
            +QGLFQS+GLYS  G+ L+EHLW +WELV+T +P +VVG +VG+SSA +L MV
Sbjct:  623 RQGLFQSMGLYSACGRGLMEHLWHMWELVITGAPVMVVGPNVGSSSAVVLAMV 675
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig85922.16750.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FNB6_ECTSI3.350e-2294.34Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KGC5_9PHAE3.350e-2294.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z9L9_9STRA5.400e-1362.26Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig85922contigS-dermatodea_contig85922:340..498 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.1
Seed ortholog evalue2.7e-18
Seed eggNOG ortholog2880.D7FNB6
KEGG koko:K17654
EggNOG free text desc.Rab guanyl-nucleotide exchange factor activity
EggNOG OGsKOG2432@1,KOG2432@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03029
Hectar predicted targeting categorysignal peptide
Exons1
Model size159
Cds size159
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925353.86972-CDS-S-dermatodea_contig85922:339..4981622925353.86972-CDS-S-dermatodea_contig85922:339..498Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig85922 340..498 -
1694079876.452546-CDS-S-dermatodea_contig85922:339..4981694079876.452546-CDS-S-dermatodea_contig85922:339..498Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig85922 340..498 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig85922.16750.1prot_S-dermatodea_contig85922.16750.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig85922 340..498 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig85922.16750.1

>prot_S-dermatodea_contig85922.16750.1 ID=prot_S-dermatodea_contig85922.16750.1|Name=mRNA_S-dermatodea_contig85922.16750.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=53bp
KQGLFQSIGLYSIFGKKLVEHLWLLWELVLTASPTLVVGSSVGASSAAIL
GMV
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mRNA from alignment at S-dermatodea_contig85922:340..498-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig85922.16750.1 ID=mRNA_S-dermatodea_contig85922.16750.1|Name=mRNA_S-dermatodea_contig85922.16750.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=159bp|location=Sequence derived from alignment at S-dermatodea_contig85922:340..498- (Saccorhiza dermatodea SderLu1190fm monoicous)
AAGCAGGGCCTGTTCCAGAGCATCGGGTTGTACAGCATCTTCGGAAAGAA
GCTGGTGGAGCACCTGTGGCTGCTGTGGGAGCTGGTCCTGACGGCCAGCC
CGACTCTGGTGGTGGGGTCGAGCGTAGGGGCGTCTTCGGCTGCTATTCTT
GGAATGGTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig85922:340..498-

>mRNA_S-dermatodea_contig85922.16750.1 ID=mRNA_S-dermatodea_contig85922.16750.1|Name=mRNA_S-dermatodea_contig85922.16750.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=318bp|location=Sequence derived from alignment at S-dermatodea_contig85922:340..498- (Saccorhiza dermatodea SderLu1190fm monoicous)
AAGCAGGGCCTGTTCCAGAGCATCGGGTTGTACAGCATCTTCGGAAAGAA
GCTGGTGGAGCACCTGTGGCTGCTGTGGGAGCTGGTCCTGACGGCCAGCC
CGACTCTGGTGGTGGGGTCGAGCGTAGGGGCGTCTTCGGCTGCTATTCTT
GGAATGGTGAAGCAGGGCCTGTTCCAGAGCATCGGGTTGTACAGCATCTT
CGGAAAGAAGCTGGTGGAGCACCTGTGGCTGCTGTGGGAGCTGGTCCTGA
CGGCCAGCCCGACTCTGGTGGTGGGGTCGAGCGTAGGGGCGTCTTCGGCT
GCTATTCTTGGAATGGTG
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