mRNA_S-dermatodea_contig8564.16726.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8564.16726.1
Unique NamemRNA_S-dermatodea_contig8564.16726.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8564.16726.1 vs. uniprot
Match: A0A6H5JL89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL89_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 1.230e-24
Identity = 48/61 (78.69%), Postives = 53/61 (86.89%), Query Frame = 1 
Query:    1 MEHWALVGERLTAEKHLAEDAKKTLVADITTSLRRLMDDINEDNLMYDPIDLGYSAGQQGR 183
            M+HWALVGE+LTAEKHLAEDAKK LV+DI +SLRRLMDDI+EDN MYDPIDLG    Q GR
Sbjct:   35 MDHWALVGEKLTAEKHLAEDAKKVLVSDIKSSLRRLMDDISEDNWMYDPIDLGQGH-QHGR 94
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BLAST of mRNA_S-dermatodea_contig8564.16726.1 vs. uniprot
Match: D7FQD5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQD5_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 1.390e-24
Identity = 45/53 (84.91%), Postives = 50/53 (94.34%), Query Frame = 1 
Query:    1 MEHWALVGERLTAEKHLAEDAKKTLVADITTSLRRLMDDINEDNLMYDPIDLG 159
            M+HWALVGE+LTAEKHLAEDAKK LV+DI +SLRRLMDDI+EDN MYDPIDLG
Sbjct:    1 MDHWALVGEKLTAEKHLAEDAKKVLVSDIKSSLRRLMDDISEDNWMYDPIDLG 53
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8564.16726.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JL89_9PHAE1.230e-2478.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQD5_ECTSI1.390e-2484.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8564contigS-dermatodea_contig8564:7428..8720 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_006520.1
Exons2
Model size186
Cds size186
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925351.8509812-CDS-S-dermatodea_contig8564:7427..75441622925351.8509812-CDS-S-dermatodea_contig8564:7427..7544Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8564 7428..7544 -
1694079875.071974-CDS-S-dermatodea_contig8564:7427..75441694079875.071974-CDS-S-dermatodea_contig8564:7427..7544Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8564 7428..7544 -
1622925351.8611128-CDS-S-dermatodea_contig8564:8651..87201622925351.8611128-CDS-S-dermatodea_contig8564:8651..8720Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8564 8652..8720 -
1694079875.0824213-CDS-S-dermatodea_contig8564:8651..87201694079875.0824213-CDS-S-dermatodea_contig8564:8651..8720Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8564 8652..8720 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8564.16726.1prot_S-dermatodea_contig8564.16726.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8564 7428..8720 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8564.16726.1

>prot_S-dermatodea_contig8564.16726.1 ID=prot_S-dermatodea_contig8564.16726.1|Name=mRNA_S-dermatodea_contig8564.16726.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=62bp
MEHWALVGERLTAEKHLAEDAKKTLVADITTSLRRLMDDINEDNLMYDPI
DLGYSAGQQGR*
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mRNA from alignment at S-dermatodea_contig8564:7428..8720-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8564.16726.1 ID=mRNA_S-dermatodea_contig8564.16726.1|Name=mRNA_S-dermatodea_contig8564.16726.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1293bp|location=Sequence derived from alignment at S-dermatodea_contig8564:7428..8720- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGAACATTGGGCGTTGGTTGGGGAGAGGCTGACCGCTGAGAAGCACCT
TGCTGAGGACGCCAAAAAGGTGAGGGTCCTCTTCCGACAGTGACGGGTCT
AAGCGCGGGGGCGTCTATGCGTCATGATATTTCTATGATAACCCACAAGC
TTACGCTACCCACTGCTGTCGCCAATGTTAGTATCAATAGTAGTGCTTTT
CTATGTGCCTTTGGGCGGTGGAGCAACTTGAACCCCGACTACTGTGCTGC
ACCCGTGTTCCACCAGCCACACTACTGGAAAAAATGCCTCCATTTTCGAA
TGCGTTTTGGGCACAACGGGTGTGTTGTGAACTATGTGCGGCGCAACTAC
CGTGGCGGCTTTTGGCGAGTCACCACCATTAGTAGCGCTGCCGTTGACTC
CGCCCACCGACAAAGGAAGCCAGCGTGACATGAGGTCAAAGCAAAGCGCA
GATATGTTTTCCAGTGCTGCGACCTCGTCGCAGCTGGGAAAGAGTGCTGA
GTGAAAATATTGTTTTGCTTTGGACCTTGATGGCGCTGCCGCGATGCCTT
GACGGGTTCGACACAGCGCCTCCTTAGGCGACATAAATACCGTGTGAAGA
ACTACTGCAATAACTCTAGAGCTCTATGGATATTCTGACCTATTCGGTGC
TCCTACGCGTTTTCTCGTGTCCTTGATCTTTTCTGTAACCTGTTCTGGCC
GCATTCATACTACTCGAAGTATAGAGTGGCGGTGATGGACCTGCATGTCC
CCATGAGAGCACATTAATAGCTCGATTTCGACCGACTCCTGATGTTGTGG
TTATTCTCCTCAGGGCAGTTCTAAGTGCTCCTGTGTATGTAGAAGTAGAG
GTCTGGTCGGCTACACGTGCGAAAGCGAATCAACGGATCAGTCAATTCAA
CAAATCAATCAAACTACGTCAATGTTTTGCCTCCGCGCACCCTCGCTAGC
TCTATTATCCTAAAATTTATCCAGGAATGATCTTCGTTGCGTGGCTCTGT
AATCCGTTTGGCCTTCTCATATTTGGGTCTGTCGTGGTTAGCGGCGGTTG
CTTTTGCAGCTGCCTGTCTGTGAATTGCAAACGTTTTATCACGGGTTCCC
AGTTAGCTTCGCTTCGCTCCCGCCCTGTCGTACGGTCCTCTCACCATATG
CCTTCTTGTGGCATCATTCTGGGCAGACTCTGGTCGCGGACATCACTACA
AGCTTGCGAAGACTCATGGACGACATCAACGAGGATAACTTGATGTATGA
CCCGATCGACTTGGGCTATAGCGCGGGACAGCAGGGGAGATGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig8564:7428..8720-

>mRNA_S-dermatodea_contig8564.16726.1 ID=mRNA_S-dermatodea_contig8564.16726.1|Name=mRNA_S-dermatodea_contig8564.16726.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=372bp|location=Sequence derived from alignment at S-dermatodea_contig8564:7428..8720- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGAACATTGGGCGTTGGTTGGGGAGAGGCTGACCGCTGAGAAGCACCT
TGCTGAGGACGCCAAAAAGATGGAACATTGGGCGTTGGTTGGGGAGAGGC
TGACCGCTGAGAAGCACCTTGCTGAGGACGCCAAAAAGACTCTGGTCGCG
GACATCACTACAAGCTTGCGAAGACTCATGGACGACATCAACGAGGATAA
CTTGATGTATGACCCGATCGACTTGGGCTATAGCGCGGGACAGCAGGGGA
GATGAACTCTGGTCGCGGACATCACTACAAGCTTGCGAAGACTCATGGAC
GACATCAACGAGGATAACTTGATGTATGACCCGATCGACTTGGGCTATAG
CGCGGGACAGCAGGGGAGATGA
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