mRNA_S-dermatodea_contig853.16700.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig853.16700.1
Unique NamemRNA_S-dermatodea_contig853.16700.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig853.16700.1 vs. uniprot
Match: D7G5P0_ECTSI (SHSP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5P0_ECTSI)

HSP 1 Score: 144 bits (364), Expect = 6.620e-40
Identity = 90/166 (54.22%), Postives = 113/166 (68.07%), Query Frame = 1
Query:    1 RAVARELSAGTS-TNTPRHEVLETPDAVIVTVDLPGCKKHDVDAQISEDSAIKTLKITAVRKKSRTAD----HPSAAGESSASP------------------DSAESSESPATPPFTEESFELSFQIGEGIDVSGVRGKLEDGVLTLVLPRVAPEPPAQPIEIPID 429
            + VA ELS  T+   +P +EVLETPDA  + VDLPGCKK DVDAQ+SEDS  KTL ITAVRKK R AD     PS+  ++S S                   ++A+ +  P+   F+EESF+LSF++GE IDVS +RG LEDGVLTLVLP++APEPPA+PI+IPID
Sbjct:   89 KKVACELSDPTTEARSPPYEVLETPDAATLIVDLPGCKKEDVDAQVSEDSGTKTLTITAVRKKPRQADGDARSPSSPPDTSGSXXXXXXXXXXXXXXXXAPHEAAKDTPEPSLSSFSEESFKLSFRVGEDIDVSVIRGGLEDGVLTLVLPKLAPEPPAEPIDIPID 254          
BLAST of mRNA_S-dermatodea_contig853.16700.1 vs. uniprot
Match: A0A1G8YWX8_9RHOB (HSP20 family protein n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A1G8YWX8_9RHOB)

HSP 1 Score: 52.0 bits (123), Expect = 1.140e-5
Identity = 40/124 (32.26%), Postives = 62/124 (50.00%), Query Frame = 1
Query:   43 TPRHEVLETPDAVIVTVDLPGCKKHDVDAQISEDSAIKTLKITAVRKKSRTADHPSAAGESSASPDSAESSESPATPPFTEE---SFELSFQIGEGIDVSGVRGKLEDGVLTLVLPRVAPEPPA 405
            TP  E   T DA ++ ++LPG  + D+D  I+ ++ + T+K                 GE  +     E  E   T  F+E    +F  SF++    D + V+ +L+DGVLT+ +PRV PEPPA
Sbjct:   30 TPASEAASTEDAYVIKIELPGVDEKDID--ITVENGVVTVK-----------------GEKKS-----EKEEKGETWYFSERQYGAFARSFRLPADADEAKVQAELKDGVLTITVPRVQPEPPA 129          
BLAST of mRNA_S-dermatodea_contig853.16700.1 vs. uniprot
Match: A0A5K1CZB9_9MAGN (Uncharacterized protein (Fragment) n=2 Tax=Nymphaea colorata TaxID=210225 RepID=A0A5K1CZB9_9MAGN)

HSP 1 Score: 51.6 bits (122), Expect = 2.100e-5
Identity = 47/141 (33.33%), Postives = 68/141 (48.23%), Query Frame = 1
Query:    1 RAVARELSAGTSTNTPRHEVLETPDAVIVTVDLPGCKKHDVDAQISEDSAIKTLKITAVRKKSRTADHPSAAGESSASPDSAESSESPATPPFTEESFELSFQIGEGIDVSGVRGKLEDGVLTLVLPRVA-PEPPAQPIEI 420
            RA A E SA  +T     +  ETPDA +  VDLPG KK +V  ++ E    K LKI+  R +                 +S E +E       +   F   F++ E + V  V+  +EDGVLT+ +P+V  P+P  + IEI
Sbjct:   37 RAFASETSALANTQI---DWKETPDAHVFKVDLPGLKKEEVKVELEEG---KVLKISGERSR-----------------ESEEKNEKWHRVERSSGKFLRRFRLPENVMVDQVKAAMEDGVLTVTVPKVPEPKPEIKSIEI 154          
BLAST of mRNA_S-dermatodea_contig853.16700.1 vs. uniprot
Match: UPI000D1D1112 (17.6 kDa class I heat shock protein-like n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=UPI000D1D1112)

HSP 1 Score: 50.8 bits (120), Expect = 3.720e-5
Identity = 42/134 (31.34%), Postives = 67/134 (50.00%), Query Frame = 1
Query:    1 RAVARELSAGTSTNTPRHEVLETPDAVIVTVDLPGCKKHDVDAQISEDSAIKTLKITAVRKKSRTADHPSAAGESSASPDSAESSESPATPPFTEESFELSFQIGEGIDVSGVRGKLEDGVLTLVLPRVA-PEP 399
            + VAR+ SA  +T   R + LETPDA +   DLPG  K DV   +      +TL+I+  RK                    A+ ++       +  SF   F++ E  +V G++ ++E+GVLT+ +P+VA P+P
Sbjct:   33 KQVARDASAAANT---RVDWLETPDAHVFKADLPGLSKEDVKITVEHG---RTLQISGERKMHE-----------------AQKTDKWHRVERSYGSFMRKFRLPENANVDGIKAQVENGVLTVTVPKVAKPQP 143          
BLAST of mRNA_S-dermatodea_contig853.16700.1 vs. uniprot
Match: A0A6A2ZP59_HIBSY (22.0 kDa class IV heat shock protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2ZP59_HIBSY)

HSP 1 Score: 51.2 bits (121), Expect = 4.320e-5
Identity = 37/132 (28.03%), Postives = 64/132 (48.48%), Query Frame = 1
Query:    7 VARELSAGTSTNTPRHEVLETPDAVIVTVDLPGCKKHDVDAQISEDSAIKTLKITAVRKKS--RTADHPSAAGESSASPDSAESSESPATPPFTEESFELSFQIGEGIDVSGVRGKLEDGVLTLVLPRVAPE 396
            +A E     + +  R +  E P+   +TVD+PG KK ++  ++ E+   + L+++  RK+   +  DH      S                      F   F++ E +D+ GV+ KLEDGVLTL LP+++P+
Sbjct:   48 LALEKDESVALSPARVDWKERPEGHTITVDVPGLKKEELKIEVEEN---RVLRVSGERKREEEKKGDHWHRVERSYGK-------------------FWRQFKLPESVDLDGVKAKLEDGVLTLSLPKLSPD 157          
BLAST of mRNA_S-dermatodea_contig853.16700.1 vs. uniprot
Match: C5Y7T5_SORBI (Uncharacterized protein n=2 Tax=Sorghum bicolor TaxID=4558 RepID=C5Y7T5_SORBI)

HSP 1 Score: 51.2 bits (121), Expect = 5.480e-5
Identity = 38/122 (31.15%), Postives = 59/122 (48.36%), Query Frame = 1
Query:   64 ETPDAVIVTVDLPGCKKHDVDAQISEDSAIKTLKITAVRKKSRTADHPSAAGESSASPDSAESSESPATPPFTEESFELSFQIGEGIDVSGVRGKLEDGVLTLVLPRVAPEPPAQPIEIPID 429
            ETPDA ++TVD+PG ++ DV  ++ E+S +  L+++  R+                  D  +  E           F   F++  G DV  V  +LEDGVLT+ +P+VA     +P  I ID
Sbjct:   86 ETPDAHVITVDVPGVRREDVKVEVEENSRV--LRVSGERRA-----------------DEEKEGERWHRAERAAGRFWRRFRMPAGADVDRVSARLEDGVLTVTMPKVAGHRGREPRVISID 188          
BLAST of mRNA_S-dermatodea_contig853.16700.1 vs. uniprot
Match: Q9ZSY1_FUNHY (Cytosolic I small heat shock protein HSP17.2IB n=1 Tax=Funaria hygrometrica TaxID=29583 RepID=Q9ZSY1_FUNHY)

HSP 1 Score: 50.1 bits (118), Expect = 7.670e-5
Identity = 44/141 (31.21%), Postives = 70/141 (49.65%), Query Frame = 1
Query:    1 RAVARELSAGTSTNTPRHEVLETPDAVIVTVDLPGCKKHDVDAQISEDSAIKTLKITAVRKKSRTADHPSAAGESSASPDSAESSESPATPPFTEESFELSFQIGEGIDVSGVRGKLEDGVLTLVLPRVA-PEPPAQPIEI 420
            R +A ++ A  ST   R +  ETP+A I   DLPG  K +V  Q+ E    +TL+I   RKK                 +  + S++       + SF   F++ EG +   V+ +++DGVLT+ +P+V  P+P  + IEI
Sbjct:   35 RQLASDVQAVAST---RIDWRETPEAHIFKADLPGLTKEEVKVQVLEG---RTLEICGERKK-----------------EEVQKSDTWHRMERAQGSFMRRFRLPEGTNTDDVKAQVQDGVLTVTVPKVQKPKPQVRQIEI 152          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig853.16700.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7G5P0_ECTSI6.620e-4054.22SHSP domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A1G8YWX8_9RHOB1.140e-532.26HSP20 family protein n=2 Tax=Alphaproteobacteria T... [more]
A0A5K1CZB9_9MAGN2.100e-533.33Uncharacterized protein (Fragment) n=2 Tax=Nymphae... [more]
UPI000D1D11123.720e-531.3417.6 kDa class I heat shock protein-like n=2 Tax=S... [more]
A0A6A2ZP59_HIBSY4.320e-528.0322.0 kDa class IV heat shock protein n=1 Tax=Hibis... [more]
C5Y7T5_SORBI5.480e-531.15Uncharacterized protein n=2 Tax=Sorghum bicolor Ta... [more]
Q9ZSY1_FUNHY7.670e-531.21Cytosolic I small heat shock protein HSP17.2IB n=1... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig853contigS-dermatodea_contig853:11765..12193 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHSP20-like chaperone
Ec32 orthologEc-12_008570.1
Exons1
Model size429
Cds size429
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925349.923845-CDS-S-dermatodea_contig853:11764..121931622925349.923845-CDS-S-dermatodea_contig853:11764..12193Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig853 11765..12193 +
1694079873.7466872-CDS-S-dermatodea_contig853:11764..121931694079873.7466872-CDS-S-dermatodea_contig853:11764..12193Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig853 11765..12193 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig853.16700.1prot_S-dermatodea_contig853.16700.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig853 11765..12193 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig853.16700.1

>prot_S-dermatodea_contig853.16700.1 ID=prot_S-dermatodea_contig853.16700.1|Name=mRNA_S-dermatodea_contig853.16700.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=143bp
RAVARELSAGTSTNTPRHEVLETPDAVIVTVDLPGCKKHDVDAQISEDSA
IKTLKITAVRKKSRTADHPSAAGESSASPDSAESSESPATPPFTEESFEL
SFQIGEGIDVSGVRGKLEDGVLTLVLPRVAPEPPAQPIEIPID
back to top

mRNA from alignment at S-dermatodea_contig853:11765..12193+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig853.16700.1 ID=mRNA_S-dermatodea_contig853.16700.1|Name=mRNA_S-dermatodea_contig853.16700.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=429bp|location=Sequence derived from alignment at S-dermatodea_contig853:11765..12193+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGCGCAGTCGCACGTGAGCTATCTGCCGGTACGTCGACGAACACCCCGCG CCACGAAGTGCTCGAGACGCCCGACGCTGTCATCGTGACGGTCGACCTTC CCGGCTGCAAGAAGCATGACGTTGACGCGCAGATCTCCGAGGATTCCGCG ATCAAGACGCTCAAGATCACCGCCGTCAGGAAAAAGTCGCGCACCGCCGA CCACCCCTCCGCCGCGGGTGAAAGCTCTGCCTCTCCCGACTCCGCAGAGT CCTCCGAATCGCCGGCAACGCCTCCGTTTACCGAAGAAAGCTTCGAGCTT TCTTTCCAAATCGGGGAAGGGATTGATGTGTCGGGCGTCCGCGGGAAGCT GGAGGACGGCGTGCTCACCCTTGTCTTGCCCAGGGTAGCACCGGAGCCAC CCGCGCAGCCCATCGAGATCCCAATCGAC
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig853:11765..12193+

>mRNA_S-dermatodea_contig853.16700.1 ID=mRNA_S-dermatodea_contig853.16700.1|Name=mRNA_S-dermatodea_contig853.16700.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=858bp|location=Sequence derived from alignment at S-dermatodea_contig853:11765..12193+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGCGCAGTCGCACGTGAGCTATCTGCCGGTACGTCGACGAACACCCCGCG
CCACGAAGTGCTCGAGACGCCCGACGCTGTCATCGTGACGGTCGACCTTC
CCGGCTGCAAGAAGCATGACGTTGACGCGCAGATCTCCGAGGATTCCGCG
ATCAAGACGCTCAAGATCACCGCCGTCAGGAAAAAGTCGCGCACCGCCGA
CCACCCCTCCGCCGCGGGTGAAAGCTCTGCCTCTCCCGACTCCGCAGAGT
CCTCCGAATCGCCGGCAACGCCTCCGTTTACCGAAGAAAGCTTCGAGCTT
TCTTTCCAAATCGGGGAAGGGATTGATGTGTCGGGCGTCCGCGGGAAGCT
GGAGGACGGCGTGCTCACCCTTGTCTTGCCCAGGGTAGCACCGGAGCCAC
CCGCGCAGCCCATCGAGATCCCAATCGACCGCGCAGTCGCACGTGAGCTA
TCTGCCGGTACGTCGACGAACACCCCGCGCCACGAAGTGCTCGAGACGCC
CGACGCTGTCATCGTGACGGTCGACCTTCCCGGCTGCAAGAAGCATGACG
TTGACGCGCAGATCTCCGAGGATTCCGCGATCAAGACGCTCAAGATCACC
GCCGTCAGGAAAAAGTCGCGCACCGCCGACCACCCCTCCGCCGCGGGTGA
AAGCTCTGCCTCTCCCGACTCCGCAGAGTCCTCCGAATCGCCGGCAACGC
CTCCGTTTACCGAAGAAAGCTTCGAGCTTTCTTTCCAAATCGGGGAAGGG
ATTGATGTGTCGGGCGTCCGCGGGAAGCTGGAGGACGGCGTGCTCACCCT
TGTCTTGCCCAGGGTAGCACCGGAGCCACCCGCGCAGCCCATCGAGATCC
CAATCGAC
back to top