mRNA_S-dermatodea_contig85288.16695.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig85288.16695.1
Unique NamemRNA_S-dermatodea_contig85288.16695.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig85288.16695.1 vs. uniprot
Match: D7G426_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G426_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 7.700e-13
Identity = 32/36 (88.89%), Postives = 32/36 (88.89%), Query Frame = 1
Query:    1 RYANLLNPLDLGHTQLKNRVLMGSMHTGLEEGGTFG 108
            RYANLL PLDLGHTQLKNRVLMGSMHTGLEE G  G
Sbjct:    3 RYANLLKPLDLGHTQLKNRVLMGSMHTGLEERGVLG 38          
BLAST of mRNA_S-dermatodea_contig85288.16695.1 vs. uniprot
Match: A0A0L0F757_9EUKA (Oxidored_FMN domain-containing protein (Fragment) n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0F757_9EUKA)

HSP 1 Score: 63.5 bits (153), Expect = 4.230e-12
Identity = 28/35 (80.00%), Postives = 31/35 (88.57%), Query Frame = 1
Query:    1 RYANLLNPLDLGHTQLKNRVLMGSMHTGLEEGGTF 105
            +YA++L PLDLG T LKNRVLMGSMHTGLEEGG F
Sbjct:   38 KYAHMLKPLDLGFTTLKNRVLMGSMHTGLEEGGVF 72          
BLAST of mRNA_S-dermatodea_contig85288.16695.1 vs. uniprot
Match: A0A835Z979_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z979_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.140e-10
Identity = 28/33 (84.85%), Postives = 30/33 (90.91%), Query Frame = 1
Query:    1 RYANLLNPLDLGHTQLKNRVLMGSMHTGLEEGG 99
            R+ NLL PLDLGHTQLKNR+LMGSMHTGLEE G
Sbjct:    6 RFPNLLKPLDLGHTQLKNRILMGSMHTGLEETG 38          
BLAST of mRNA_S-dermatodea_contig85288.16695.1 vs. uniprot
Match: A0A7G2S2D0_9GAMM (NADPH-dependent 2,4-dienoyl-CoA reductase n=3 Tax=Alcanivorax TaxID=59753 RepID=A0A7G2S2D0_9GAMM)

HSP 1 Score: 63.2 bits (152), Expect = 1.560e-10
Identity = 27/31 (87.10%), Postives = 31/31 (100.00%), Query Frame = 1
Query:    1 RYANLLNPLDLGHTQLKNRVLMGSMHTGLEE 93
            RY+NLL+PLDLGHTQLKNRV+MGSMHTGLE+
Sbjct:    5 RYSNLLSPLDLGHTQLKNRVIMGSMHTGLED 35          
BLAST of mRNA_S-dermatodea_contig85288.16695.1 vs. uniprot
Match: A0A1H2SKB7_9GAMM (2,4-dienoyl-CoA reductase (NADPH2) n=2 Tax=Marinobacter TaxID=2742 RepID=A0A1H2SKB7_9GAMM)

HSP 1 Score: 62.4 bits (150), Expect = 2.910e-10
Identity = 27/31 (87.10%), Postives = 30/31 (96.77%), Query Frame = 1
Query:    1 RYANLLNPLDLGHTQLKNRVLMGSMHTGLEE 93
            RY NLL+PLDLGHTQLKNRV+MGSMHTGLE+
Sbjct:    5 RYQNLLSPLDLGHTQLKNRVIMGSMHTGLED 35          
BLAST of mRNA_S-dermatodea_contig85288.16695.1 vs. uniprot
Match: Q0VNU5_ALCBS (2,4-dienoyl-CoA reductase [NADPH] n=16 Tax=Alcanivorax TaxID=59753 RepID=Q0VNU5_ALCBS)

HSP 1 Score: 62.4 bits (150), Expect = 2.910e-10
Identity = 26/31 (83.87%), Postives = 31/31 (100.00%), Query Frame = 1
Query:    1 RYANLLNPLDLGHTQLKNRVLMGSMHTGLEE 93
            RY+NLL+PLDLGHTQ+KNRV+MGSMHTGLE+
Sbjct:    5 RYSNLLSPLDLGHTQIKNRVIMGSMHTGLED 35          
BLAST of mRNA_S-dermatodea_contig85288.16695.1 vs. uniprot
Match: A0A656SL51_VIBPH (Oxidored_FMN domain-containing protein n=5 Tax=Vibrio parahaemolyticus TaxID=670 RepID=A0A656SL51_VIBPH)

HSP 1 Score: 57.4 bits (137), Expect = 6.550e-10
Identity = 26/30 (86.67%), Postives = 27/30 (90.00%), Query Frame = 1
Query:    4 YANLLNPLDLGHTQLKNRVLMGSMHTGLEE 93
            Y NLL PLDLG TQL+NRVLMGSMHTGLEE
Sbjct:    5 YPNLLKPLDLGFTQLRNRVLMGSMHTGLEE 34          
BLAST of mRNA_S-dermatodea_contig85288.16695.1 vs. uniprot
Match: A0A8B7MZA8_HYAAZ (2,4-dienoyl-CoA reductase [NADPH]-like n=1 Tax=Hyalella azteca TaxID=294128 RepID=A0A8B7MZA8_HYAAZ)

HSP 1 Score: 60.5 bits (145), Expect = 1.140e-9
Identity = 27/31 (87.10%), Postives = 29/31 (93.55%), Query Frame = 1
Query:    4 YANLLNPLDLGHTQLKNRVLMGSMHTGLEEG 96
            Y +LL+PLDLGHT LKNRVLMGSMHTGLEEG
Sbjct:    4 YPHLLSPLDLGHTTLKNRVLMGSMHTGLEEG 34          
BLAST of mRNA_S-dermatodea_contig85288.16695.1 vs. uniprot
Match: A0A3R7W5M1_9STRA (Oxidored_FMN domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3R7W5M1_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 1.280e-9
Identity = 27/32 (84.38%), Postives = 30/32 (93.75%), Query Frame = 1
Query:    1 RYANLLNPLDLGHTQLKNRVLMGSMHTGLEEG 96
            +Y++LL PLDLG TQLKNRVLMGSMHTGLEEG
Sbjct:    3 KYSHLLQPLDLGFTQLKNRVLMGSMHTGLEEG 34          
BLAST of mRNA_S-dermatodea_contig85288.16695.1 vs. uniprot
Match: A0A484E0L0_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E0L0_BRELC)

HSP 1 Score: 60.5 bits (145), Expect = 1.390e-9
Identity = 27/32 (84.38%), Postives = 30/32 (93.75%), Query Frame = 1
Query:    1 RYANLLNPLDLGHTQLKNRVLMGSMHTGLEEG 96
            +Y++LL PLDLG TQLKNRVLMGSMHTGLEEG
Sbjct:    3 KYSHLLEPLDLGFTQLKNRVLMGSMHTGLEEG 34          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig85288.16695.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G426_ECTSI7.700e-1388.89Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A0L0F757_9EUKA4.230e-1280.00Oxidored_FMN domain-containing protein (Fragment) ... [more]
A0A835Z979_9STRA1.140e-1084.85Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7G2S2D0_9GAMM1.560e-1087.10NADPH-dependent 2,4-dienoyl-CoA reductase n=3 Tax=... [more]
A0A1H2SKB7_9GAMM2.910e-1087.102,4-dienoyl-CoA reductase (NADPH2) n=2 Tax=Marinob... [more]
Q0VNU5_ALCBS2.910e-1083.872,4-dienoyl-CoA reductase [NADPH] n=16 Tax=Alcaniv... [more]
A0A656SL51_VIBPH6.550e-1086.67Oxidored_FMN domain-containing protein n=5 Tax=Vib... [more]
A0A8B7MZA8_HYAAZ1.140e-987.102,4-dienoyl-CoA reductase [NADPH]-like n=1 Tax=Hya... [more]
A0A3R7W5M1_9STRA1.280e-984.38Oxidored_FMN domain-containing protein n=1 Tax=Per... [more]
A0A484E0L0_BRELC1.390e-984.38Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig85288contigS-dermatodea_contig85288:34..153 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.9
Seed ortholog evalue1.6e-10
Seed eggNOG ortholog2880.D7G426
KEGG koko:K00219
EggNOG free text desc.NADPH-adrenodoxin reductase activity
EggNOG OGsCOG0493@1,COG1902@1,KOG0134@2759,KOG1800@2759
EC1.3.1.34
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size120
Cds size120
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925349.486372-CDS-S-dermatodea_contig85288:33..1531622925349.486372-CDS-S-dermatodea_contig85288:33..153Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig85288 34..153 +
1694079873.4015577-CDS-S-dermatodea_contig85288:33..1531694079873.4015577-CDS-S-dermatodea_contig85288:33..153Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig85288 34..153 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig85288.16695.1prot_S-dermatodea_contig85288.16695.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig85288 34..153 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig85288.16695.1

>prot_S-dermatodea_contig85288.16695.1 ID=prot_S-dermatodea_contig85288.16695.1|Name=mRNA_S-dermatodea_contig85288.16695.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=40bp
RYANLLNPLDLGHTQLKNRVLMGSMHTGLEEGGTFGEQQ*
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mRNA from alignment at S-dermatodea_contig85288:34..153+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig85288.16695.1 ID=mRNA_S-dermatodea_contig85288.16695.1|Name=mRNA_S-dermatodea_contig85288.16695.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=120bp|location=Sequence derived from alignment at S-dermatodea_contig85288:34..153+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGGTACGCGAATCTTCTGAACCCCTTGGATCTGGGCCATACACAACTAAA AAACCGCGTTTTGATGGGATCGATGCACACCGGCTTGGAAGAGGGCGGCA CTTTTGGTGAGCAGCAATAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig85288:34..153+

>mRNA_S-dermatodea_contig85288.16695.1 ID=mRNA_S-dermatodea_contig85288.16695.1|Name=mRNA_S-dermatodea_contig85288.16695.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=240bp|location=Sequence derived from alignment at S-dermatodea_contig85288:34..153+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGGTACGCGAATCTTCTGAACCCCTTGGATCTGGGCCATACACAACTAAA
AAACCGCGTTTTGATGGGATCGATGCACACCGGCTTGGAAGAGGGCGGCA
CTTTTGGTGAGCAGCAATAAAGGTACGCGAATCTTCTGAACCCCTTGGAT
CTGGGCCATACACAACTAAAAAACCGCGTTTTGATGGGATCGATGCACAC
CGGCTTGGAAGAGGGCGGCACTTTTGGTGAGCAGCAATAA
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