mRNA_S-dermatodea_contig8501.16671.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8501.16671.1
Unique NamemRNA_S-dermatodea_contig8501.16671.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8501.16671.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8501contigS-dermatodea_contig8501:6049..6582 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size534
Cds size420
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8501.16671.1prot_S-dermatodea_contig8501.16671.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8501 6111..6530 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925347.8776863-UTR-S-dermatodea_contig8501:6048..61101622925347.8776863-UTR-S-dermatodea_contig8501:6048..6110Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8501 6049..6110 +
1694079872.4566844-UTR-S-dermatodea_contig8501:6048..61101694079872.4566844-UTR-S-dermatodea_contig8501:6048..6110Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8501 6049..6110 +
1622925347.9014697-UTR-S-dermatodea_contig8501:6530..65821622925347.9014697-UTR-S-dermatodea_contig8501:6530..6582Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8501 6531..6582 +
1694079872.4746058-UTR-S-dermatodea_contig8501:6530..65821694079872.4746058-UTR-S-dermatodea_contig8501:6530..6582Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8501 6531..6582 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925347.8902137-CDS-S-dermatodea_contig8501:6110..65301622925347.8902137-CDS-S-dermatodea_contig8501:6110..6530Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8501 6111..6530 +
1694079872.4666436-CDS-S-dermatodea_contig8501:6110..65301694079872.4666436-CDS-S-dermatodea_contig8501:6110..6530Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8501 6111..6530 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8501.16671.1

>prot_S-dermatodea_contig8501.16671.1 ID=prot_S-dermatodea_contig8501.16671.1|Name=mRNA_S-dermatodea_contig8501.16671.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=140bp
MFSYPFHRTLPVVGAPFRPERNPPKLFFPDICRRWLDGDAMAMATGVLGV
LEGANGQAALRPYFPGEPGAPPLLPCAAQPHCAALGVKWALHCSRLTITR
VTSLRAGWGTGVAASRIGVVRSFESSRIKSYRILDSNRP*
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mRNA from alignment at S-dermatodea_contig8501:6049..6582+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8501.16671.1 ID=mRNA_S-dermatodea_contig8501.16671.1|Name=mRNA_S-dermatodea_contig8501.16671.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=534bp|location=Sequence derived from alignment at S-dermatodea_contig8501:6049..6582+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TGGTGTAGTACACCATCGCGCTCCACACTCAATCTCCGGAGTTCTCGTAG
AACGATCCATAAATGTTTTCTTACCCGTTCCATAGAACGCTCCCCGTCGT
CGGAGCGCCTTTCCGCCCAGAGCGGAATCCCCCAAAACTTTTTTTTCCCG
ATATCTGCCGCCGTTGGTTGGATGGCGATGCGATGGCGATGGCGACGGGT
GTCCTTGGGGTGCTTGAAGGAGCGAATGGACAGGCCGCCCTTCGCCCGTA
TTTTCCGGGGGAACCTGGGGCGCCCCCGCTCTTGCCGTGTGCCGCGCAGC
CCCACTGCGCTGCGCTTGGAGTAAAATGGGCGTTGCATTGTTCTCGTTTG
ACGATTACACGCGTCACAAGTTTGCGCGCAGGCTGGGGAACGGGAGTTGC
CGCCTCTCGAATTGGAGTGGTGCGGTCTTTCGAGTCGAGTCGAATCAAAT
CGTATCGAATCTTGGATTCAAATCGACCGTGACCGCGTCCGCGGTCCCGG
TCCCGGTCCCCGCCCTACCTGTGTTGTCCCCCCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig8501:6049..6582+

>mRNA_S-dermatodea_contig8501.16671.1 ID=mRNA_S-dermatodea_contig8501.16671.1|Name=mRNA_S-dermatodea_contig8501.16671.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=840bp|location=Sequence derived from alignment at S-dermatodea_contig8501:6049..6582+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTTTTCTTACCCGTTCCATAGAACGCTCCCCGTCGTCGGAGCGCCTTT
CCGCCCAGAGCGGAATCCCCCAAAACTTTTTTTTCCCGATATCTGCCGCC
GTTGGTTGGATGGCGATGCGATGGCGATGGCGACGGGTGTCCTTGGGGTG
CTTGAAGGAGCGAATGGACAGGCCGCCCTTCGCCCGTATTTTCCGGGGGA
ACCTGGGGCGCCCCCGCTCTTGCCGTGTGCCGCGCAGCCCCACTGCGCTG
CGCTTGGAGTAAAATGGGCGTTGCATTGTTCTCGTTTGACGATTACACGC
GTCACAAGTTTGCGCGCAGGCTGGGGAACGGGAGTTGCCGCCTCTCGAAT
TGGAGTGGTGCGGTCTTTCGAGTCGAGTCGAATCAAATCGTATCGAATCT
TGGATTCAAATCGACCGTGAATGTTTTCTTACCCGTTCCATAGAACGCTC
CCCGTCGTCGGAGCGCCTTTCCGCCCAGAGCGGAATCCCCCAAAACTTTT
TTTTCCCGATATCTGCCGCCGTTGGTTGGATGGCGATGCGATGGCGATGG
CGACGGGTGTCCTTGGGGTGCTTGAAGGAGCGAATGGACAGGCCGCCCTT
CGCCCGTATTTTCCGGGGGAACCTGGGGCGCCCCCGCTCTTGCCGTGTGC
CGCGCAGCCCCACTGCGCTGCGCTTGGAGTAAAATGGGCGTTGCATTGTT
CTCGTTTGACGATTACACGCGTCACAAGTTTGCGCGCAGGCTGGGGAACG
GGAGTTGCCGCCTCTCGAATTGGAGTGGTGCGGTCTTTCGAGTCGAGTCG
AATCAAATCGTATCGAATCTTGGATTCAAATCGACCGTGA
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