mRNA_S-dermatodea_contig84832.16650.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig84832.16650.1
Unique NamemRNA_S-dermatodea_contig84832.16650.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig84832.16650.1 vs. uniprot
Match: A0A6H5KMF3_9PHAE (Hist_deacetyl domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KMF3_9PHAE)

HSP 1 Score: 157 bits (398), Expect = 9.340e-43
Identity = 80/102 (78.43%), Postives = 84/102 (82.35%), Query Frame = 1 
Query:    1 PLVLDVGMPLPEGDDTPGSSRHRWRDVYRKEILPKLAAFKPDLILVSAGFDAHKKDSINYGYIGLLEEDYEWVTQQLVQV-------RVVSCREMGGRGVGG 285
            PLVLDVGMPLPE  DTPG+SRHRWRDVYRK+ILPKL AF PD+ILVSAGFDAHKKD INYGYIGLLEEDYEWVTQQLVQV       R+VS  E G R  GG
Sbjct:  869 PLVLDVGMPLPEIGDTPGASRHRWRDVYRKDILPKLVAFDPDIILVSAGFDAHKKDVINYGYIGLLEEDYEWVTQQLVQVANRCCEGRLVSVLEGGYRIQGG 970
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BLAST of mRNA_S-dermatodea_contig84832.16650.1 vs. uniprot
Match: A0A835YM84_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM84_9STRA)

HSP 1 Score: 129 bits (323), Expect = 1.220e-32
Identity = 66/111 (59.46%), Postives = 78/111 (70.27%), Query Frame = 1 
Query:    1 PLVLDVGMPLPEGDDTPGSSRHRWRDVY---------RKEILPKLAAFKPDLILVSAGFDAHKKDSINYGYIGLLEEDYEWVTQQLVQV-------RVVSCREMGGRGVGG 285
            P++LDVG+PLP+  DTPG SR +WR+ Y         RKE+LP L  F PD+IL+SAGFDAH+KD IN+GYIGLL+EDYEWVT QLVQV       RVVS  E G R  GG
Sbjct:  805 PMILDVGLPLPQPHDTPGRSRLQWRNAYSXXXXXXXHRKEVLPALVEFNPDIILISAGFDAHRKDVINFGYIGLLDEDYEWVTAQLVQVANRCCDGRVVSVLEGGYRIQGG 915
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BLAST of mRNA_S-dermatodea_contig84832.16650.1 vs. uniprot
Match: A0A7S2FDC1_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FDC1_9STRA)

HSP 1 Score: 115 bits (287), Expect = 1.140e-29
Identity = 56/96 (58.33%), Postives = 69/96 (71.88%), Query Frame = 1 
Query:    1 PLVLDVGMPLPEGDDTPGSSRHRWRDVYRKEILPKLAAFKPDLILVSAGFDAHKKDSINYGYIGLLEEDYEWVTQQLVQV-------RVVSCREMG 267
            P +++ G  L   D TPG++R  WRD YR+ ILPKLA F PDLIL+SAGFDAHKKD++  G+IGLLE+DY WVTQQLV+V       R+VS  E G
Sbjct:    5 PKIINFGFALLSPDATPGTARLEWRDAYRRTILPKLAEFNPDLILISAGFDAHKKDTMACGFIGLLEDDYTWVTQQLVKVANKCCDGRIVSMLEGG 100
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BLAST of mRNA_S-dermatodea_contig84832.16650.1 vs. uniprot
Match: A0A4D9CRN0_9STRA (Hist_deacetyl domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CRN0_9STRA)

HSP 1 Score: 117 bits (294), Expect = 9.930e-29
Identity = 60/102 (58.82%), Postives = 74/102 (72.55%), Query Frame = 1 
Query:    4 LVLDVGMPLPEGDDT-PGSSRHRWRDVYRKEILPKLAAFKPDLILVSAGFDAHKKDSINYGYIGLLEEDYEWVTQQLVQV-------RVVSCREMGGRGVGG 285
            LVLDVGM L +  +T PG+SR  WR   RK +LP+LAAFKPD++ +SAGFDAH+KDSIN GY+GL+EEDY W+T+ LV+V       RVVS  E G R  GG
Sbjct:  681 LVLDVGMGLVDSAETVPGTSRVEWRTAMRKTVLPRLAAFKPDMVFISAGFDAHRKDSINMGYLGLIEEDYAWITRHLVRVANTFCEGRVVSVLEGGYRIEGG 782
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BLAST of mRNA_S-dermatodea_contig84832.16650.1 vs. uniprot
Match: A0A7R9UCK2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UCK2_9STRA)

HSP 1 Score: 116 bits (290), Expect = 2.360e-28
Identity = 56/94 (59.57%), Postives = 73/94 (77.66%), Query Frame = 1 
Query:    7 VLDVGMPLPEGDDTPGSSRHRWRDVYRKEILPKLAAFKPDLILVSAGFDAHKKDSINYGYIGLLEEDYEWVTQQLVQV-------RVVSCREMG 267
            +LD+G+ LP  +  PG+SR+R+RD YRK ILP+L AFKPDLIL+SAGFD HKKD IN+G++GL+EED+EWVT +L++V       RVVS  E G
Sbjct:  328 ILDLGLALPNME-VPGTSRYRFRDGYRKVILPRLMAFKPDLILISAGFDGHKKDDINFGFLGLVEEDFEWVTDELIKVANSCCEGRVVSVLEGG 420
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BLAST of mRNA_S-dermatodea_contig84832.16650.1 vs. uniprot
Match: A0A7S0STD7_9STRA (Hypothetical protein n=2 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0STD7_9STRA)

HSP 1 Score: 109 bits (273), Expect = 9.370e-28
Identity = 57/106 (53.77%), Postives = 72/106 (67.92%), Query Frame = 1 
Query:    1 PLVLDVGMPLP----EGDDTPGSSRHRWRDVYRKEILPKLAAFKPDLILVSAGFDAHKKDSINYGYIGLLEEDYEWVTQQLVQV-------RVVSCREMGGRGVGG 285
            PL+LDVG+ LP    E   + G  RHRWR+ +R  I P+L  FKPD I +SAGFDAHKKD+IN GYI L+EED+EW+T QLV++       RV+S  E GG  +GG
Sbjct:   28 PLILDVGVSLPGLSEEEVTSHGEYRHRWRNYFRDIIFPRLLIFKPDAIFISAGFDAHKKDTINAGYISLVEEDFEWITTQLVKIANTCCDGRVISALE-GGYQLGG 132
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BLAST of mRNA_S-dermatodea_contig84832.16650.1 vs. uniprot
Match: A0A7S2QZ77_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2QZ77_9STRA)

HSP 1 Score: 114 bits (285), Expect = 1.610e-27
Identity = 48/83 (57.83%), Postives = 65/83 (78.31%), Query Frame = 1 
Query:    7 VLDVGMPLPEGDDTPGSSRHRWRDVYRKEILPKLAAFKPDLILVSAGFDAHKKDSINYGYIGLLEEDYEWVTQQLVQVRVVSC 255
            ++++G+ LP+ DD PG  R   RD YRKEILP L  F PD+I +SAGFDAHK+DS+N+GY+G++E+DYEWVT+QLV+V    C
Sbjct:  518 IINMGLSLPKPDDIPGMQRIEVRDSYRKEILPHLMDFDPDIIFISAGFDAHKRDSMNFGYVGMVEDDYEWVTEQLVKVANACC 600
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BLAST of mRNA_S-dermatodea_contig84832.16650.1 vs. uniprot
Match: A0A7S1E613_9STRA (Hypothetical protein n=2 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E613_9STRA)

HSP 1 Score: 109 bits (272), Expect = 2.070e-27
Identity = 51/100 (51.00%), Postives = 70/100 (70.00%), Query Frame = 1 
Query:    7 VLDVGMPLPEGDDTPGSSRHRWRDVYRKEILPKLAAFKPDLILVSAGFDAHKKDSINYGYIGLLEEDYEWVTQQLVQV-------RVVSCREMGGRGVGG 285
            +L+ G+ LP  D  PG  R   RD YRK +LP+L  F PD+I +SAGFDAH+KD++N+GY+G++E+DYEWVT+Q+V+V       RVVS  E G +  GG
Sbjct:   56 ILNCGLGLPPRDAIPGMQRLELRDTYRKSVLPRLREFDPDIIFISAGFDAHRKDTMNFGYVGMVEDDYEWVTEQIVKVANSCCNGRVVSVLEGGYKVHGG 155
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BLAST of mRNA_S-dermatodea_contig84832.16650.1 vs. uniprot
Match: A0A7S3Q0M5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q0M5_9STRA)

HSP 1 Score: 113 bits (283), Expect = 3.050e-27
Identity = 55/100 (55.00%), Postives = 70/100 (70.00%), Query Frame = 1 
Query:    7 VLDVGMPLPEGDDTPGSSRHRWRDVYRKEILPKLAAFKPDLILVSAGFDAHKKDSINYGYIGLLEEDYEWVTQQLVQV-------RVVSCREMGGRGVGG 285
            +++VG+ LP   +TPG  R   RD YRK ILP L  F PDLI +SAGFDAHK+D +NYGY+G++EEDYEW+T+QLV+V       R+VS  E G R  GG
Sbjct:  867 IINVGLNLPVPGETPGMQRVETRDAYRKNILPHLLDFNPDLIFISAGFDAHKRDEMNYGYVGMVEEDYEWLTEQLVKVANKCCNGRIVSVLEGGYRIHGG 966
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BLAST of mRNA_S-dermatodea_contig84832.16650.1 vs. uniprot
Match: A0A7S4IZS9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IZS9_9STRA)

HSP 1 Score: 112 bits (281), Expect = 4.590e-27
Identity = 54/100 (54.00%), Postives = 70/100 (70.00%), Query Frame = 1 
Query:    7 VLDVGMPLPEGDDTPGSSRHRWRDVYRKEILPKLAAFKPDLILVSAGFDAHKKDSINYGYIGLLEEDYEWVTQQLVQV-------RVVSCREMGGRGVGG 285
            +++VG+ LP   D PG  R   RD YRK ILP L  F PD+I VSAGFDAHKKDS+N+GY+G++E+DYEWVT+QL++V       R+VS  E G +  GG
Sbjct:  385 IINVGLDLPRPHDVPGMQRVELRDSYRKNILPHLLDFDPDMIFVSAGFDAHKKDSMNFGYVGMVEDDYEWVTEQLIKVANSCCNGRIVSVLEGGYKMHGG 484
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig84832.16650.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KMF3_9PHAE9.340e-4378.43Hist_deacetyl domain-containing protein n=2 Tax=Ec... [more]
A0A835YM84_9STRA1.220e-3259.46Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2FDC1_9STRA1.140e-2958.33Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A4D9CRN0_9STRA9.930e-2958.82Hist_deacetyl domain-containing protein n=2 Tax=Mo... [more]
A0A7R9UCK2_9STRA2.360e-2859.57Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S0STD7_9STRA9.370e-2853.77Hypothetical protein n=2 Tax=Chromulina nebulosa T... [more]
A0A7S2QZ77_9STRA1.610e-2757.83Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S1E613_9STRA2.070e-2751.00Hypothetical protein n=2 Tax=Thalassionema nitzsch... [more]
A0A7S3Q0M5_9STRA3.050e-2755.00Hypothetical protein (Fragment) n=1 Tax=Chaetocero... [more]
A0A7S4IZS9_9STRA4.590e-2754.00Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig84832contigS-dermatodea_contig84832:71..355 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score143.7
Seed ortholog evalue4.2e-32
Seed eggNOG ortholog2880.D8LR52
EggNOG free text desc.NAD-dependent histone deacetylase activity (H3-K14 specific)
EggNOG OGsCOG0123@1,COG0666@1,KOG1343@2759,KOG4177@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size285
Cds size264
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925346.1317868-CDS-S-dermatodea_contig84832:70..3341622925346.1317868-CDS-S-dermatodea_contig84832:70..334Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig84832 71..334 -
1694079871.1533906-CDS-S-dermatodea_contig84832:70..3341694079871.1533906-CDS-S-dermatodea_contig84832:70..334Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig84832 71..334 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925346.143306-UTR-S-dermatodea_contig84832:334..3551622925346.143306-UTR-S-dermatodea_contig84832:334..355Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig84832 335..355 -
1694079871.1653414-UTR-S-dermatodea_contig84832:334..3551694079871.1653414-UTR-S-dermatodea_contig84832:334..355Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig84832 335..355 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig84832.16650.1prot_S-dermatodea_contig84832.16650.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig84832 71..334 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig84832.16650.1

>prot_S-dermatodea_contig84832.16650.1 ID=prot_S-dermatodea_contig84832.16650.1|Name=mRNA_S-dermatodea_contig84832.16650.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=88bp
MPLPEGDDTPGSSRHRWRDVYRKEILPKLAAFKPDLILVSAGFDAHKKDS
INYGYIGLLEEDYEWVTQQLVQVRVVSCREMGGRGVGG
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mRNA from alignment at S-dermatodea_contig84832:71..355-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig84832.16650.1 ID=mRNA_S-dermatodea_contig84832.16650.1|Name=mRNA_S-dermatodea_contig84832.16650.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=285bp|location=Sequence derived from alignment at S-dermatodea_contig84832:71..355- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCGCTGGTGCTGGACGTGGGCATGCCACTACCGGAAGGCGACGACACCCC
GGGCTCGTCTCGACACCGCTGGCGCGACGTCTACCGCAAGGAGATACTGC
CGAAGCTCGCCGCGTTCAAGCCGGACTTGATCCTCGTCAGCGCCGGCTTC
GACGCGCACAAGAAGGACTCGATCAACTACGGCTACATCGGGCTGCTCGA
GGAGGATTACGAGTGGGTCACGCAGCAGCTGGTGCAGGTCCGTGTCGTGT
CGTGTCGCGAAATGGGGGGGCGGGGGGTGGGGGGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig84832:71..355-

>mRNA_S-dermatodea_contig84832.16650.1 ID=mRNA_S-dermatodea_contig84832.16650.1|Name=mRNA_S-dermatodea_contig84832.16650.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=528bp|location=Sequence derived from alignment at S-dermatodea_contig84832:71..355- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCCACTACCGGAAGGCGACGACACCCCGGGCTCGTCTCGACACCGCTG
GCGCGACGTCTACCGCAAGGAGATACTGCCGAAGCTCGCCGCGTTCAAGC
CGGACTTGATCCTCGTCAGCGCCGGCTTCGACGCGCACAAGAAGGACTCG
ATCAACTACGGCTACATCGGGCTGCTCGAGGAGGATTACGAGTGGGTCAC
GCAGCAGCTGGTGCAGGTCCGTGTCGTGTCGTGTCGCGAAATGGGGGGGC
GGGGGGTGGGGGGGATGCCACTACCGGAAGGCGACGACACCCCGGGCTCG
TCTCGACACCGCTGGCGCGACGTCTACCGCAAGGAGATACTGCCGAAGCT
CGCCGCGTTCAAGCCGGACTTGATCCTCGTCAGCGCCGGCTTCGACGCGC
ACAAGAAGGACTCGATCAACTACGGCTACATCGGGCTGCTCGAGGAGGAT
TACGAGTGGGTCACGCAGCAGCTGGTGCAGGTCCGTGTCGTGTCGTGTCG
CGAAATGGGGGGGCGGGGGGTGGGGGGG
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