mRNA_S-dermatodea_contig8476.16646.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8476.16646.1
Unique NamemRNA_S-dermatodea_contig8476.16646.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8476.16646.1 vs. uniprot
Match: D7FHC5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHC5_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 3.220e-11
Identity = 32/54 (59.26%), Postives = 40/54 (74.07%), Query Frame = 2 
Query:   74 PDAPPMSPDAGGAVWFEDLPPAPPAPSTIGVLEEGEGGGAMDER--PRWGRKPL 229
            PDAPP+  +A GAV F++LPPAPPAP TIGVL+E E     +E   PRWGR+P+
Sbjct:   26 PDAPPVGLNAEGAVTFDELPPAPPAPDTIGVLDEKEKESPWNEPDPPRWGRRPM 79
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BLAST of mRNA_S-dermatodea_contig8476.16646.1 vs. uniprot
Match: A0A6H5K5S7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5S7_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 4.750e-10
Identity = 33/54 (61.11%), Postives = 39/54 (72.22%), Query Frame = 2 
Query:   74 PDAPPMSPDAGGAVWFEDLPPAPPAPSTIGVLEEGEGGGAMDER--PRWGRKPL 229
            PDAPP+  +A GAV FE LPPAPPAP TIGVL+E E     +E   PRWGR+P+
Sbjct:  531 PDAPPVGLNAEGAVTFEKLPPAPPAPDTIGVLDEKEKESPWNEPTPPRWGRRPM 584
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8476.16646.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FHC5_ECTSI3.220e-1159.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K5S7_9PHAE4.750e-1061.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8476contigS-dermatodea_contig8476:2050..8426 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-03_003980.1
Hectar predicted targeting categoryother localisation
Exons2
Model size244
Cds size225
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8476.16646.1prot_S-dermatodea_contig8476.16646.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8476 2069..8426 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925345.8931968-UTR-S-dermatodea_contig8476:2049..20681622925345.8931968-UTR-S-dermatodea_contig8476:2049..2068Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8476 2050..2068 +
1694079870.976023-UTR-S-dermatodea_contig8476:2049..20681694079870.976023-UTR-S-dermatodea_contig8476:2049..2068Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8476 2050..2068 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925345.90877-CDS-S-dermatodea_contig8476:2068..21261622925345.90877-CDS-S-dermatodea_contig8476:2068..2126Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8476 2069..2126 +
1694079870.9903324-CDS-S-dermatodea_contig8476:2068..21261694079870.9903324-CDS-S-dermatodea_contig8476:2068..2126Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8476 2069..2126 +
1622925345.918382-CDS-S-dermatodea_contig8476:8259..84261622925345.918382-CDS-S-dermatodea_contig8476:8259..8426Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8476 8260..8426 +
1694079870.9994729-CDS-S-dermatodea_contig8476:8259..84261694079870.9994729-CDS-S-dermatodea_contig8476:8259..8426Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8476 8260..8426 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8476.16646.1

>prot_S-dermatodea_contig8476.16646.1 ID=prot_S-dermatodea_contig8476.16646.1|Name=mRNA_S-dermatodea_contig8476.16646.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=75bp
MGRRGAGGNDSGDEDEVCPDAPPMSPDAGGAVWFEDLPPAPPAPSTIGVL
EEGEGGGAMDERPRWGRKPLVRLG*
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mRNA from alignment at S-dermatodea_contig8476:2050..8426+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8476.16646.1 ID=mRNA_S-dermatodea_contig8476.16646.1|Name=mRNA_S-dermatodea_contig8476.16646.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=6377bp|location=Sequence derived from alignment at S-dermatodea_contig8476:2050..8426+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGGGAAGGCTAGGAGAAGAATGGGTCGGAGGGGCGCCGGTGGTAATGACT
CTGGGGATGAGGATGAAGTCTGCCCAGGTATGTATACTTGTAGAGCTATA
GGACTATCATGTGTATTTTGATTGATTTGATTGATTTGATTTGATTTGAT
TTGATTTGATTTGATTTGATTTGATTTGATTTGCACACGTATAGCCGATC
GGCTTAATCCGACCCGACTTGTGGTCAGACACGCAAAGAGTGTATTTTAT
CCTATAATACCAAACAGTTTTTTTCCTCACGAGTTTTCTTGGGTTTTCGT
GTTTTGTGTTGTGTTAAAAAGTCATTTATTTCCAAGTTCTCTGTGTGTAT
GTCTGTGGTCCTTTCATTGATTGGTTGGTTAACTGGCACACGTATGATCG
ATCGGCTCAACCCTTTTGGGACTAAGGCTGTTTTCGGGCAACTGTTTGAT
ATTACTATGTACCCTTTGTTTTGGGACTAAGGTTGTTTTCGGGTAACTGT
TTGCTATTATGGTAGCCAACAGTTCCCCGAAAACAGGCGTAGTCCCGAGG
CTTGGTCACAAAAGGGTAAATAATAATAGCAAACATTTACCCGAAAACAG
CCTTAGTCCAAAAAGGGTTAATCACACCCGACCTGTGGTAAGATGCGCAA
AGAGTCAATCAAGGGGGAAAGTATCTTATCAGAAACCTGCTTCTCCAAAT
GTAGCAATACCGTTCCTGTTGCTATTCATAGTATTATAGAGTACAGCAAA
AGAAAAATACAAAAAATATACATTTCCGTGGCAATTACTTTGTTTTTGTG
TGTATGCGTGTATATGTGTGTGCGTGCGCAAATACATACCGGTAGTAATT
ATACCTTACGCCTTCAATTTAACTTGAAGAATCGGGTCGGAAAATATTTA
AAAGGCCGGCTCTCCGTCCGAAAACAAAACCTCGAGAATGGGACGGAAAT
CTGGCCTTCTAAAATATTTTCCGACCCGATTCTTCAAGTTAAATTGAAGG
CGTAAGGTACAATTACTACCGGTATGTATTTGCACACGCATATACACGCA
TACACACACAGAGTAGTACATACAAATACATGCTTACGCAACAGCAGTTT
TTGTTTTGTTTTTTTTTGGCACACATATGACAGACTTTATTTTCCGAGGT
CCATCTGTGGTCACAAGGGATCATCCCATCTCTCCCCGGTTCTCACCTTT
GATTTTTATCGCGCATACATACATCCAAAAACATAGAGACTGTTGTAGGA
TATCACAGACACACCGAACGACGGCGATGCCGGACTCGACACCAGCAAGG
CGCCCGCCGTTGAGTTCCACCCGTTCGACCAGCGTGCCCTCGAAAACGCC
TCTTTTTGCTCCTGTGGATGCATCGATCAAACCAACAGAAGAGTTCTGCG
CTGCCAACCGCTATTTAGTGTGTTGTTGTTTATGCCTGTCCCTTTTTCTG
CTTGTGCCTATCAACCCTACAACTAGTTTCTCCAGCTGGCACCAGAACAG
CCCACAGCAGTAGTAGTGCTGATCCACGGACGATCCGGCGGCCGTCGCAG
CTGCATTCTCTCGCTCCTCCTTGCATACATCCCGTCCTCGAGTCCTCACA
GGCTGGTTTTGTACTGTGCCGAGGGAGGCGTAAACATTTCGGATTTATGT
GTTTTTTTTTGTCGCCACCGACAAATTACCCTCATTTCCAGAGGGCCAGG
AAAAAATAACGGCACCTACAATTTTCTTCTGGACTATTACCGTTTTTTTC
TTCCCATTGTGGTACTTCGCGCAAAAATGGCGTACGGACATGGGTTTCGT
TTTTGTGTTTTCCGGGTCCCATAGCGTTTGGCCTATCACCAGATGTATGA
TACAAGCTGGTATTTCCCTCCCCCCTTCTTTTGTGTTTTGTTAAAACCAT
TTTGATATATCCAGCACTGTTCTCTGTATACACACAGCACCACACCAAAC
CACACCACACCACACCACACCACACCACTCCACACCAGGACGCAGAACTT
GGTAGGGAAGAAAAGGCCGCTAAAACTAGTTAATAATAGTTAATAACCCA
ACAAACGACTAGACCGAATGGGGAGAGGGAAAGCGGTTTGGTAGGAAAGC
ATTGTGTTTTATTTTCCAACCAAAACAACTCACCCGATGACGTCACGACC
GCAGCGACCAACGCCACAACCACCACCACGGCCGCCCTCCCCTTAGCACC
GCTGTCCCTCACGCCCCCAGCCACCCTGAGTGGAAACCCCAGCACTGCAA
CGGACTCAGTCCCAACGGTGTTACGGTAATTAAACCATCATTCGGGTACT
GTACCTGTGCGATGCGAAACACAGCGCGGGCAGATGTATGGCCCCGGAAA
ACGTAATCAGTCCCAAAAGGTTAAGTCAAACCACCGTTCGGGTACTGTAC
CTGTTTGATGCGAAACACGCCCTCAGAAAAATGTCTTAGCGCGAAAAGGG
TTAAGATCGGTCAGCTGTTAATAGCAACACACCGCAGGCTCAAAGAAGTA
TCACACTTCATTTTTTTGCCGACTATGACACGGAAAATAACAACTATTAA
TAGAATCGAAGGCTTTTTCGCTTGGACGTTTTTGCTTCCCACCCATTTCC
CAAGTGTTTTCAGCTCTCACAAATCGATTTTGCCTCCACTTGGAGTAGCA
CAGACTGAGACGGGACCTTCGGCAATGCTCTACCTTTGGTCCACTTGAGG
GGTTGGGATTGTGCAGAATTTGTGTTCGCCACAAGAAAATGAGATCTTCC
TCGCGGTGGCAAAGGGTGCCTGGATCGGTCGTTTTAGAAGATTTTCCCTA
GGAAAGCTCGAGCTTGACAGATTTCAACCGATTTCCCTCTGGGCTCTTGT
TCACCGTTGGTGCTATACACTTTGGGAGAGGTCTCGGGTGAGCACTCTCA
ACAGGGGTGTAGTGTGCAGAATTTTGGTTGCGGGCAGTTCTTGAGCTTTT
GAACAATCTCTCGTTTTCGCTAAGGAATGTTGTGTGTTCAGTGTGGTTCC
ACAGCTGGTTTTTGAGTTTGTTGTTTGGTTCCAGAATTCGAAAAACGGGA
AGCAAAAAAACACGTGTGGTATGGCTAAGCTCGCCACGGGCTCGCGTCAG
AGGGCTTTCCACGGTGTAAGGAGGCGTTATCTGTGATCGCTCGATCTCGC
CCGATCTCGATCGGCCACTTTCGATCATGATCCAGAACTCTCGAGCAAAT
ACATACAGGGCGAGATCGAGACACCTGCCGTGTGATCGCTCGGTGTTACC
TCGATCTGGATCTGGATCTCGATCCCGATCGTTCACCTCCGATCATGACC
GAAAACATCACGAGAAATATTTTTTTGTGTACGAGATCGAGACTCCTGCC
GTGTGATCGCTCGATCTCGCTCGATCTTGATCCCGATCTCGATCTCGATC
GGTCACAGCTGATCATGATAAAGCAAACTCGATAATGTATGTAAACATTC
GACGTCGAGATTCCTGCCGTGTTATCGCTCGATCTTGACCCCGATCTCGA
TCTCGATCTCGATCTCGATCTCGATCGGTCACTTCCGAAAATGGTCAAAA
CAATCTCTGGAAAATATATTAAACACGAGATCGAGACTTCTGCCGTGTGA
TTTCTCGATCTCGCTCGATCTCGATCTCGATCTCGATCTCGATCGGTCAC
CTCCTGTCATGACCGAAAAATCACGAGAAAATATATACCTGGTATAATAC
AAGATCGAGACTCCTGCCTGCCTTGTGATAGCTTGATCTCGCTCCATCTC
CATCTCCATCTCCATCTCCATCTCCATCTCGATCGACCACTTTTGATCAT
GACGAAATTTCTCGAGAAAATGTGTAAAAGACGACATCGAGACGCCTGCC
GTGTGATCGCTCGATCTCAATCCCGATCGGCCACCTTCGATCATGACCGA
AAATCTCGAAAAAATATGTAAAACACGAGATATAGACGCCTGCCGTGTGA
TCCATCGATCTCGCTCGATCTCGATCTCCATCGGACACTTTTTATCATGA
CCGACAACTCTCGAAAACAATTACAAAATACGAGATCGAGACTCCTGCCA
TGTGATTTAAATAGCTCGATCTCGCTCTCGATCTCGATATCGATCGGTAA
CTTGCAGTTATGACCGAAAAATCTCGAGAACAATACATATATTGTATCAT
AATACGAGATGGACACGCCAGCCGTGTGATCGCTCGGTCTCGCTCGATCT
CGATCACTATCTCGATCTCTATCGCTTTCGACCATGACCGAAAAATTCCG
AAAAACGCAAAAATGGAGAGATGGAGACACCTGCCCGAATCTCGTGACCG
AACTATTTCTTTTGCATACAAAACAGCTGGTCGACCGCTACCCCCTAAAA
AAATCAAAGATTTCAGAAACATAGAGCGAGCGTTGGGGTCCCACCTTTTC
AAGAGGGAAGATGGTCCAAGCTACACCTATGGAGGTTCACTTCCCCCCTA
CAAACAAACACGTACACAACACACACGGCGCGCGCTCTCACCTGAAGACT
TTTGCGACGCCCGTGCGCTGCGGCTTGGTGTCCAAACGTCGATTTGAATC
AAAGAATTAAACGGACTACTTGCATGCGTTGCGTTTTCATCTCTGCTTGA
GTGCCGGTGCTGTACAACTGTAGTGGACTGTGTTGTACTGTCTCATGTGC
TCCAATAATGTACTGTATGTACTGTAATGTAATGTAATGTAGTGTAATAT
ACTGTGTTGTACTGTATTGTGCTGTGTTGTACTGTGTTGACTGTACTATA
ATGTACTGCAGTAATGTACTGCATTGTACTTCTACTGTTATGTGCTGTAC
GGTAACATACTGTGTTGTACTGTATTTGACTGTATTTGACTGTATTTGAC
TGTAATATAAAGGACTGTAGTGTATTGCGTTGTGCTGTACTATAATGTAC
TGCAATAGTGTACTGTATTGTACACTACTGTAATGTGCTGCTGTGTTGTA
ACGTCGTCGTCGTGGCGTTAATGTATGGCTGTACTGTGTTGTACTGTATT
GTACTGTATTATGCTGTGTTGTACTGTACTATAATGTACTGGAATGTATG
GTATTGTGCTGTACTGTAATGTGCTGTAATGTGCTGCTGGATTGTAACGT
CGTCGTCGTGGCGTTAATGTCAACATGTACAACCACAAAAACGCTCGTGG
CTACTTTTTGCGCACGATTATCTTGAAACATTTTTGTCTGGTCATTTTTC
GCCTGGTGTATCTCGTCTTTCGTCTGATTTTTTTTCGCCAGCAGTAATCC
TTACTACATACTATAATACTATTATAATGAATAGTGCTTTGAACTTTTTT
TAGTAGCAATTTAGAATTGGTCCTTGATACCAAATCGATACTTGAAGGCT
GTAGAGTAGAGTTCTTGTTGATGATGCCAAATCGATAGGGCTTAGAGAGT
GTAAATCGTTTTCGGGCCTTTCGCATACTAATACGTAAAATGACAAATGA
AAACGCGCTCGCTGGTCGTTTTGCGCCCACTATGTTTAAAAATCTTATAT
CGTCTGTCTGAACGTTTTTCGCCTGGTGTATCATCTTGTCGTCCATTTGA
TTTTTTTTCCCTCGCGTATTTTCAATGTTCGCCTCATGTAATACTTTTTT
TCGCCTAAAAAAAAATCGCCTCATGTGTGTGTTCGCCTGAAGTACATCTC
CGCCTGTTATTGTTTGTGTTTTCCCCTCCGCTTTTTTTCCCGCCCGCCCT
GAACTTTCCCACAGATATTCCTCCGATGAGTCCGGACACGCTTCCCCTCC
GCATATTTTTCGCCTGATGCATCTTTCCCAGGCGATAAATTACTCTCCTA
TTACGGAGATACAGAGTAATCAGGACACACATCTCACGACCATAAATAAT
AAATACGCAACTGTTCCGACTGTGGAAACCCAAAAAACACCACACAACTC
ATGAACAAGAAACAAACACGAGACCTGGCCTATAAGACAAGCACCACCGT
GAGTACCTACCCAATCGATCCGACCTCTTTTGTTTTTGCCAAGTCAAGAT
TAGTGACGGATTTGGACCTGTTAACTATGGTATGGTCCCTATCAACGTTT
CTCCTGTCCGCCTGACTCTTGGTTTTCCACTGTGTTCGTTCGTTCGTTCG
CCTCGTGTGCGTTTCTCTAAAATGCTTTCTTTCTCTCAGCCTGACTTTGT
TTTCCCTGTTTTTCTTCGTATTTCTTCTTTTTCGGCCTGCTTGAATTTTT
CCCCTCGCAGATGCTCCTCCGATGAGTCCCGACGCCGGAGGCGCGGTTTG
GTTCGAAGACTTACCCCCAGCACCCCCCGCCCCTAGCACGATCGGGGTGT
TGGAGGAAGGGGAGGGGGGGGGGGCGATGGACGAGCGTCCCCGATGGGGT
CGAAAGCCGTTGGTAAGATTAGGCTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig8476:2050..8426+

>mRNA_S-dermatodea_contig8476.16646.1 ID=mRNA_S-dermatodea_contig8476.16646.1|Name=mRNA_S-dermatodea_contig8476.16646.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=450bp|location=Sequence derived from alignment at S-dermatodea_contig8476:2050..8426+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGGTCGGAGGGGCGCCGGTGGTAATGACTCTGGGGATGAGGATGAAGT
CTGCCCAGATGGGTCGGAGGGGCGCCGGTGGTAATGACTCTGGGGATGAG
GATGAAGTCTGCCCAGATGCTCCTCCGATGAGTCCCGACGCCGGAGGCGC
GGTTTGGTTCGAAGACTTACCCCCAGCACCCCCCGCCCCTAGCACGATCG
GGGTGTTGGAGGAAGGGGAGGGGGGGGGGGCGATGGACGAGCGTCCCCGA
TGGGGTCGAAAGCCGTTGGTAAGATTAGGCTGAATGCTCCTCCGATGAGT
CCCGACGCCGGAGGCGCGGTTTGGTTCGAAGACTTACCCCCAGCACCCCC
CGCCCCTAGCACGATCGGGGTGTTGGAGGAAGGGGAGGGGGGGGGGGCGA
TGGACGAGCGTCCCCGATGGGGTCGAAAGCCGTTGGTAAGATTAGGCTGA
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