mRNA_S-dermatodea_contig84679.16636.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig84679.16636.1
Unique NamemRNA_S-dermatodea_contig84679.16636.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig84679.16636.1 vs. uniprot
Match: D7G1H8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1H8_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 4.070e-17
Identity = 36/44 (81.82%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:    1 CAKSGVAFGMTQSRYKCSSCGMAFVQEHCNQRVPLPHHGFEQVM 132
            C KSGVAFGMTQSR+ CSSCG  FV EHCNQRVPLPHHGFEQ +
Sbjct:  142 CMKSGVAFGMTQSRHYCSSCGRVFVVEHCNQRVPLPHHGFEQAV 185
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BLAST of mRNA_S-dermatodea_contig84679.16636.1 vs. uniprot
Match: A0A6H5KWD1_9PHAE (PI3K/PI4K catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWD1_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 6.740e-16
Identity = 35/42 (83.33%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:    1 CAKSGVAFGMTQSRYKCSSCGMAFVQEHCNQRVPLPHHGFEQ 126
            C KSGVAFGMTQSR+ CSSCG  FV EHCNQRVPLP HGFEQ
Sbjct:  186 CMKSGVAFGMTQSRHYCSSCGRVFVLEHCNQRVPLPQHGFEQ 227
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BLAST of mRNA_S-dermatodea_contig84679.16636.1 vs. uniprot
Match: A0A835YUK5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUK5_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 2.180e-9
Identity = 29/46 (63.04%), Postives = 31/46 (67.39%), Query Frame = 1 
Query:    1 CAKSGV-----AFGMTQSRYKCSSCGMAFVQEHCNQRVPLPHHGFE 123
            CAKSGV     AFG+TQSRY C SCG AF  EHC+   PL HHG E
Sbjct:  304 CAKSGVGLDNLAFGLTQSRYNCVSCGRAFTFEHCHLECPLVHHGLE 349
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig84679.16636.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G1H8_ECTSI4.070e-1781.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KWD1_9PHAE6.740e-1683.33PI3K/PI4K catalytic domain-containing protein n=1 ... [more]
A0A835YUK5_9STRA2.180e-963.04Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig84679contigS-dermatodea_contig84679:427..576 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.0
Seed ortholog evalue2.3e-09
Seed eggNOG ortholog2880.D7G1H8
Preferred namePI4KB
KEGG rclassRC00002,RC00078
KEGG koko:K19801
KEGG ReactionR03361
KEGG Pathwayko00562,ko01100,ko04070,map00562,map01100,map04070
KEGG ModuleM00130
GOsGO:0000003,GO:0000139,GO:0000212,GO:0000226,GO:0000280,GO:0000910,GO:0000916,GO:0003674,GO:0003824,GO:0004430,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0005829,GO:0005886,GO:0006464,GO:0006629,GO:0006644,GO:0006650,GO:0006661,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006897,GO:0006898,GO:0006996,GO:0007010,GO:0007017,GO:0007030,GO:0007049,GO:0007051,GO:0007110,GO:0007111,GO:0007112,GO:0007140,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007283,GO:0007423,GO:0007568,GO:0008150,GO:0008152,GO:0008340,GO:0008610,GO:0008654,GO:0009058,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010256,GO:0010259,GO:0010604,GO:0012505,GO:0016020,GO:0016043,GO:0016192,GO:0016301,GO:0016310,GO:0016567,GO:0016740,GO:0016772,GO:0016773,GO:0019222,GO:0019538,GO:0019637,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022603,GO:0023052,GO:0030029,GO:0030036,GO:0030258,GO:0030725,GO:0030726,GO:0030865,GO:0030866,GO:0031032,GO:0031090,GO:0031410,GO:0031982,GO:0031984,GO:0032446,GO:0032501,GO:0032502,GO:0032504,GO:0032506,GO:0033206,GO:0035295,GO:0035556,GO:0036211,GO:0036213,GO:0042176,GO:0042710,GO:0043062,GO:0043063,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043583,GO:0044010,GO:0044011,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044764,GO:0044837,GO:0045017,GO:0045732,GO:0046474,GO:0046486,GO:0046488,GO:0046834,GO:0046854,GO:0048015,GO:0048017,GO:0048137,GO:0048232,GO:0048285,GO:0048471,GO:0048513,GO:0048518,GO:0048609,GO:0048731,GO:0048839,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051239,GO:0051246,GO:0051247,GO:0051301,GO:0051321,GO:0051703,GO:0051704,GO:0051716,GO:0052742,GO:0060255,GO:0060872,GO:0061640,GO:0061982,GO:0061983,GO:0065007,GO:0070647,GO:0071704,GO:0071840,GO:0071889,GO:0071944,GO:0080090,GO:0090175,GO:0090407,GO:0090605,GO:0090609,GO:0097708,GO:0098588,GO:0098657,GO:0098791,GO:0140013,GO:1901564,GO:1901576,GO:1903046,GO:1905330,GO:2000026,GO:2000027
EggNOG free text desc.phosphatidylinositol kinase activity
EggNOG OGsCOG5032@1,KOG0903@2759,KOG1818@1,KOG1818@2759
EC2.7.1.67
COG Functional cat.BDLTU
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size150
Cds size123
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925345.3493202-CDS-S-dermatodea_contig84679:426..5491622925345.3493202-CDS-S-dermatodea_contig84679:426..549Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig84679 427..549 -
1694079870.6599953-CDS-S-dermatodea_contig84679:426..5491694079870.6599953-CDS-S-dermatodea_contig84679:426..549Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig84679 427..549 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925345.3605146-UTR-S-dermatodea_contig84679:549..5761622925345.3605146-UTR-S-dermatodea_contig84679:549..576Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig84679 550..576 -
1694079870.685327-UTR-S-dermatodea_contig84679:549..5761694079870.685327-UTR-S-dermatodea_contig84679:549..576Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig84679 550..576 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig84679.16636.1prot_S-dermatodea_contig84679.16636.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig84679 427..549 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig84679.16636.1

>prot_S-dermatodea_contig84679.16636.1 ID=prot_S-dermatodea_contig84679.16636.1|Name=mRNA_S-dermatodea_contig84679.16636.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=41bp
MTQSRYKCSSCGMAFVQEHCNQRVPLPHHGFEQVMAPIMF*
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mRNA from alignment at S-dermatodea_contig84679:427..576-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig84679.16636.1 ID=mRNA_S-dermatodea_contig84679.16636.1|Name=mRNA_S-dermatodea_contig84679.16636.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=150bp|location=Sequence derived from alignment at S-dermatodea_contig84679:427..576- (Saccorhiza dermatodea SderLu1190fm monoicous)
TGCGCGAAGTCAGGAGTGGCGTTCGGGATGACCCAGTCTCGATACAAGTG
CTCCAGCTGCGGGATGGCGTTTGTACAGGAGCACTGCAACCAGCGGGTGC
CGCTGCCGCACCACGGGTTCGAGCAGGTGATGGCGCCGATAATGTTTTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig84679:427..576-

>mRNA_S-dermatodea_contig84679.16636.1 ID=mRNA_S-dermatodea_contig84679.16636.1|Name=mRNA_S-dermatodea_contig84679.16636.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=246bp|location=Sequence derived from alignment at S-dermatodea_contig84679:427..576- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGACCCAGTCTCGATACAAGTGCTCCAGCTGCGGGATGGCGTTTGTACA
GGAGCACTGCAACCAGCGGGTGCCGCTGCCGCACCACGGGTTCGAGCAGG
TGATGGCGCCGATAATGTTTTGAATGACCCAGTCTCGATACAAGTGCTCC
AGCTGCGGGATGGCGTTTGTACAGGAGCACTGCAACCAGCGGGTGCCGCT
GCCGCACCACGGGTTCGAGCAGGTGATGGCGCCGATAATGTTTTGA
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