mRNA_S-dermatodea_contig8443.16615.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
|
Overview
Homology
BLAST of mRNA_S-dermatodea_contig8443.16615.1 vs. uniprot
Match: D8LCR8_ECTSI (Pyruvate carboxylase n=2 Tax=Phaeophyceae TaxID=2870 RepID=D8LCR8_ECTSI) HSP 1 Score: 371 bits (953), Expect = 1.470e-109 Identity = 184/222 (82.88%), Postives = 204/222 (91.89%), Query Frame = 1
Query: 1 LLQVLKGKTLPNGKSCFDGRPGAEMPPYKFDNEMRQLHGQYGLGVTERDLVSHAQYPAVFKDFMASREEHGDLSILDTRTFVSGMKTGQEISVEIEHGKVLFIKLMSVQDPDEEGVRSVTFELNGQPRVVRIKDKSVAGDVKARPKADATVIGSVGAPMPGVVVGVKVKTGDRVTQGQPLLVLSAMKMETNVASPADGVVKALLVKDGDSIQGNDLVAEIDV 666
+++VLKGKTLPNGKSCF+GRPGAEMP YKF EMRQL G++G+ VTE+DL+SHAQYPAVFK+F REEHGDLSILDTRTFVSGMKTGQEISVEIEHGKVLFIKLMSVQ+PDEEG RSVTFELNGQPRVVR+KDKSVAG + AR KAD +V+GSVGAPMPGVVVG+KV G+ V QGQPLLVLSAMKMETNVASPADG+VKAL VK+GD+IQGNDLVAEIDV
Sbjct: 931 IIKVLKGKTLPNGKSCFEGRPGAEMPDYKFSKEMRQLVGEHGVAVTEQDLISHAQYPAVFKEFTKFREEHGDLSILDTRTFVSGMKTGQEISVEIEHGKVLFIKLMSVQEPDEEGSRSVTFELNGQPRVVRVKDKSVAGSITARGKADDSVVGSVGAPMPGVVVGIKVNPGETVKQGQPLLVLSAMKMETNVASPADGIVKALHVKEGDNIQGNDLVAEIDV 1152
BLAST of mRNA_S-dermatodea_contig8443.16615.1 vs. uniprot
Match: A0A6H5L2A7_9PHAE (Pyruvate carboxylase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2A7_9PHAE) HSP 1 Score: 363 bits (932), Expect = 2.300e-108 Identity = 182/217 (83.87%), Postives = 197/217 (90.78%), Query Frame = 1
Query: 16 KGKTLPNGKSCFDGRPGAEMPPYKFDNEMRQLHGQYGLGVTERDLVSHAQYPAVFKDFMASREEHGDLSILDTRTFVSGMKTGQEISVEIEHGKVLFIKLMSVQDPDEEGVRSVTFELNGQPRVVRIKDKSVAGDVKARPKADATVIGSVGAPMPGVVVGVKVKTGDRVTQGQPLLVLSAMKMETNVASPADGVVKALLVKDGDSIQGNDLVAEIDV 666
KGKTLPNGKSCFDGRPGAEMP Y F EMRQL G++G+ VTE+DL+SHAQYPAVFK+F REEHGDLSILDTRTFVSGMKTGQEISVEIEHGKVLFIKLMSVQ+PDEEG RSVTFELNGQPRVVR+KDKSVAG + AR KAD +VIGSVGAPMPGVVVG+KV G+ V QGQPLLVLSAMKMETNVASPADG+VKAL VK+GD+IQGNDLV EIDV
Sbjct: 713 KGKTLPNGKSCFDGRPGAEMPDYDFPKEMRQLVGEHGVAVTEQDLISHAQYPAVFKEFAKFREEHGDLSILDTRTFVSGMKTGQEISVEIEHGKVLFIKLMSVQEPDEEGSRSVTFELNGQPRVVRVKDKSVAGSITARGKADDSVIGSVGAPMPGVVVGIKVHPGETVKQGQPLLVLSAMKMETNVASPADGIVKALHVKEGDNIQGNDLVVEIDV 929
BLAST of mRNA_S-dermatodea_contig8443.16615.1 vs. uniprot
Match: A0A4D9CY33_9STRA (Pyruvate carboxylase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CY33_9STRA) HSP 1 Score: 259 bits (663), Expect = 2.540e-69 Identity = 130/218 (59.63%), Postives = 162/218 (74.31%), Query Frame = 1
Query: 10 VLKGKTLPNGKSCFDGRPGAEMPPYKFDNEMRQLHGQYGLGVTERDLVSHAQYPAVFKDFMASREEHGDLSILDTRTFVSGMKTGQEISVEIEHGKVLFIKLMSVQDPDEEGVRSVTFELNGQPRVVRIKDKSVAGDVKARPKADATVIGSVGAPMPGVVVGVKVKTGDRVTQGQPLLVLSAMKMETNVASPADGVVKALLVKDGDSIQGNDLVAEID 663
VLKG+TLPNGK+CF+GRPGAE+PP+ F++E + L YG + + D+++HAQYP VF + + +E+ D+S+LDTRTF+ GMK G E+SVE+EHGK LF+KL SV D G R V FELNGQ RV++ KD +VK RPKAD + GSVGAPMPG+VV VKVK G V +GQPLLVLSAMKMET + SPA G VK LLV GD+I G DLV EI+
Sbjct: 994 VLKGRTLPNGKACFEGRPGAELPPFAFEDEKQGLLDLYGKHIRDVDVMTHAQYPQVFSKYQSFFKEYDDVSVLDTRTFLQGMKLGAEVSVELEHGKTLFVKLNSVGQVDATGHRDVIFELNGQQRVIKTKDTKADVNVKVRPKADLGIPGSVGAPMPGLVVEVKVKVGQAVKKGQPLLVLSAMKMETVLTSPAAGTVKTLLVGAGDNIAGGDLVVEIE 1211
BLAST of mRNA_S-dermatodea_contig8443.16615.1 vs. uniprot
Match: A0A835YR17_9STRA (Pyruvate carboxylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR17_9STRA) HSP 1 Score: 242 bits (618), Expect = 1.800e-63 Identity = 123/190 (64.74%), Postives = 148/190 (77.89%), Query Frame = 1
Query: 7 QVLKGKTLPNGKSCFDGRPGAEMPPYKFDNEMRQLHGQYGL-GVTERDLVSHAQYPAVFKDFMASREEHGDLSILDTRTFVSGMKTGQEISVEIEHGKVLFIKLMSVQDPDEEGVRSVTFELNGQPRVVRIKDKSVAGDVKARPKADATVIGSVGAPMPGVVVGVKVKTGDRVTQGQPLLVLSAMKMETN 573
+VLKGKTLP GK F+GRPGAEM P+ FD L +YG + E DL+SH QYPAVFK+FM ++ +GDLS LDTRTFVSGMK GQEI+V+IE GK LFIKL+SV +PD+EG+R V FELNGQ R++++KD SV R KAD ++IGSVGAPMPGVV+GVKVKTG RV GQ L+VLSAMKMET+
Sbjct: 967 RVLKGKTLPGGKQMFEGRPGAEMAPFDFDAARVGLQQKYGKDNIRELDLMSHVQYPAVFKEFMDVKDTYGDLSKLDTRTFVSGMKIGQEIAVQIEVGKTLFIKLISVSNPDDEGIRQVVFELNGQQRIIKVKDNSVGASATRRGKADPSMIGSVGAPMPGVVLGVKVKTGARVKAGQSLVVLSAMKMETS 1156
BLAST of mRNA_S-dermatodea_contig8443.16615.1 vs. uniprot
Match: A0A836CLQ1_9STRA (Pyruvate carboxylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLQ1_9STRA) HSP 1 Score: 236 bits (603), Expect = 1.350e-61 Identity = 122/220 (55.45%), Postives = 151/220 (68.64%), Query Frame = 1
Query: 7 QVLKGKTLPNGKSCFDGRPGAEMPPYKFDNEMRQLHGQYGLG-VTERDLVSHAQYPAVFKDFMASREEHGDLSILDTRTFVSGMKTGQEISVEIEHGKVLFIKLMSVQDPDEEGVRSVTFELNGQPRVVRIKDKSVAGDVKARPKADATVIGSVGAPMPGVVVGVKVKTGDRVTQGQPLLVLSAMKMETNVASPADGVVKALLVKDGDSIQGNDLVAEID 663
+VLKGKTLPNG F RPGAEM P FD L +YG + + DL+SH QYPAVFK+FMA++++ GDLS+LDTRTFVSGMK GQE +V+IE GK+LFIKL SV +PD +G+R V FELNGQ R++++KD +V R KAD + GSVGAPMPGVV+GVKVK GD+V GQPL+VLSAMKMET+ DL+ EI+
Sbjct: 926 RVLKGKTLPNGNQMFTARPGAEMEPCDFDKARSALVKKYGSDHIRDVDLMSHIQYPAVFKEFMAAKDKFGDLSVLDTRTFVSGMKIGQESAVQIEVGKILFIKLQSVSNPDADGIRHVVFELNGQQRIIKVKDNAVGATATHRAKADPSNAGSVGAPMPGVVIGVKVKKGDKVASGQPLVVLSAMKMETSXXXXXXXXXXXXXXXXXXXXXXXDLIVEIE 1145
BLAST of mRNA_S-dermatodea_contig8443.16615.1 vs. uniprot
Match: A0A2D4BQS3_PYTIN (Putative carboxylase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BQS3_PYTIN) HSP 1 Score: 233 bits (593), Expect = 2.320e-61 Identity = 117/231 (50.65%), Postives = 159/231 (68.83%), Query Frame = 1
Query: 7 QVLKGKTLPNGKSCFDGRPGAEMPPYKFDNEMRQLHGQYGLGVTERDLVSHAQYPAVFKDFMASREEHGDLSILDTRTFVSGMKTGQEISVEIEHGKVLFIKLMSVQDPDE-EGVRSVTFELNGQPRVVRIKDKSVAGDVKARPKADATVIGSVGAPMPGVVVGVKVKTGDRVTQGQPLLVLSAMKMETNVASPADGVVKALLVKDGDSIQGNDLVAEIDV*TAEAIVAID 696
+VLKGK LPNGKS FDGRPGAEMPPY FD + L +YG + + D++SHA YP VF ++M +E++G + LDTRTF+SG++ G+E+ + IEHGK +F+KL++V + +G R V FELNG+ RV+++ D+ +PKA+ V GSVGAPMPGVV+ VKVK G +V G PL+VLSAMKMET VA+P G V ++L GD++ DL+ E D T A +D
Sbjct: 595 RVLKGKVLPNGKSMFDGRPGAEMPPYDFDAAAKSLRKKYGEQIRDVDVLSHAIYPDVFDNYMKFKEQYGSMHFLDTRTFLSGLEVGREVELTIEHGKTIFLKLIAVGGVSKVDGTRDVIFELNGRQRVIKVTDQEAGVSTVTKPKANTAVAGSVGAPMPGVVLEVKVKPGQQVKAGSPLVVLSAMKMETVVAAPVGGKVTSILANVGDNMLAGDLLVEXDE-TGSAAAEVD 824
BLAST of mRNA_S-dermatodea_contig8443.16615.1 vs. uniprot
Match: K0S261_THAOC (Pyruvate carboxylase (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S261_THAOC) HSP 1 Score: 231 bits (588), Expect = 1.830e-59 Identity = 116/222 (52.25%), Postives = 157/222 (70.72%), Query Frame = 1
Query: 7 QVLKGKTLP--NGKSCFDGRPGAEMPPYKFDNEMRQLHGQYGLG-VTERDLVSHAQYPAVFKDFMASREEHGDLSILDTRTFVSGMKTGQEISVEIEHGKVLFIKLMSVQDPDEEGVRSVTFELNGQPRVVRIKDKSVAGDVKARPKADATVIGSVGAPMPGVVVGVKVKTGDRVTQGQPLLVLSAMKMETNVASPADGVVKALLVKDGDSIQGNDLVAEID 663
+VLKG+T+ +G SCF+GRPGA++PPY F + L ++G ++ D++SHA YPAVF +FM ++EE+G + LDTRTF++GMK GQE+ V +E GK L +KL+SV + D+EGV + FELNGQPR V +KDKS A+PKA V GSVGA MPGVV+ KV GD + +G PL+++SAMKMET + SP DG VK + V GD ++G DLV EI+
Sbjct: 1104 RVLKGRTIDGTDGLSCFEGRPGAQLPPYDFASSKTSLEDKWGADKISPHDIMSHALYPAVFDEFMLAKEEYGGVGCLDTRTFLTGMKVGQELDVSLEKGKNLIVKLISVGESDDEGVVHIQFELNGQPRSVHVKDKSSKVAETAKPKALQGVTGSVGASMPGVVLETKVSKGDEIRKGDPLVLMSAMKMETIITSPCDGTVKQVAVTAGDHLEGGDLVVEIE 1325
BLAST of mRNA_S-dermatodea_contig8443.16615.1 vs. uniprot
Match: A0A2R5GAU7_9STRA (Pyruvate carboxylase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GAU7_9STRA) HSP 1 Score: 230 bits (586), Expect = 2.510e-59 Identity = 116/221 (52.49%), Postives = 156/221 (70.59%), Query Frame = 1
Query: 7 QVLKGKTLPNGKSCFDGRPGAEMPPYKFDNEMRQLHGQYGLG-VTERDLVSHAQYPAVFKDFMASREEHGDLSILDTRTFVSGMKTGQEISVEIEHGKVLFIKLMSVQDPDE-EGVRSVTFELNGQPRVVRIKDKSVAGDVKARPKADATVIGSVGAPMPGVVVGVKVKTGDRVTQGQPLLVLSAMKMETNVASPADGVVKALLVKDGDSIQGNDLVAEID 663
+VLKGK LPNGKS F+GRPGAEM PY F+ QL +YG + E D++SHA YP VF DFM + E G + + DT TF++G++ QE+++E+EHGK +F+KL++V + +G R + FE+NG+ RV+R+ D+ + RPKA A+V GSVGAPMPGVV+ V+VK G+ V G PLLVLSAMKMET VA+P G VKA+ GD++ G DL+ EID
Sbjct: 964 RVLKGKVLPNGKSVFEGRPGAEMEPYDFEAAQAQLEEKYGADKINELDVMSHALYPDVFDDFMKFKSEFGSMRVFDTHTFLTGLEVDQEVAIELEHGKTVFVKLIAVGGVSQKDGKRDIIFEMNGRQRVIRVADQQAGVSLAERPKAVASVPGSVGAPMPGVVLDVRVKQGEIVKAGTPLLVLSAMKMETVVAAPVSGRVKAIHTNVGDNMLGGDLLVEID 1184
BLAST of mRNA_S-dermatodea_contig8443.16615.1 vs. uniprot
Match: A0A5D6XYJ8_9STRA (Pyruvate carboxylase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XYJ8_9STRA) HSP 1 Score: 227 bits (579), Expect = 1.990e-58 Identity = 117/221 (52.94%), Postives = 158/221 (71.49%), Query Frame = 1
Query: 7 QVLKGKTLPNGKSCFDGRPGAEMPPYKFDNEMRQLHGQYGLG-VTERDLVSHAQYPAVFKDFMASREEHGDLSILDTRTFVSGMKTGQEISVEIEHGKVLFIKLMSVQDPDE-EGVRSVTFELNGQPRVVRIKDKSVAGDVKARPKADATVIGSVGAPMPGVVVGVKVKTGDRVTQGQPLLVLSAMKMETNVASPADGVVKALLVKDGDSIQGNDLVAEID 663
+VLKGK LPNGKS F+GRPGAEM PY F QL +YG V + D++SHA YP VF +FM ++++G L LDTRTF++G++ E+ +EIEHGK +F+KL++V + +G R V FELNG+ RV+++KD+ A+PKA+AT+ GS+GAPMPGVV+ V+VK G++V G PLLVLSAMKMET VA+P G V A+ GD++ G DL+ EID
Sbjct: 959 RVLKGKLLPNGKSIFEGRPGAEMAPYDFAAAEAQLKAKYGAEKVRDVDVLSHAIYPDVFDNFMQFKDQYGSLHFLDTRTFLTGLEVDHEVELEIEHGKKIFVKLVAVGGVSKKDGTRDVIFELNGRQRVIKVKDEHAGVATAAKPKANATLAGSIGAPMPGVVLEVRVKQGEQVKAGAPLLVLSAMKMETVVAAPVSGKVVAIHAAVGDNMLGGDLLVEID 1179
BLAST of mRNA_S-dermatodea_contig8443.16615.1 vs. uniprot
Match: A0A7S0B139_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0B139_9STRA) HSP 1 Score: 204 bits (519), Expect = 2.260e-56 Identity = 104/201 (51.74%), Postives = 141/201 (70.15%), Query Frame = 1
Query: 7 QVLKGKTLPN-GKSCFDGRPGAEMPPYKFDNEMRQLHGQYGLG---------VTERDLVSHAQYPAVFKDFMASREEHGDLSILDTRTFVSGMKTGQEISVEIEHGKVLFIKLMSVQDPDEEGVRSVTFELNGQPRVVRIKDKSVAGDVKARPKADATVIGSVGAPMPGVVVGVKVKTGDRVTQGQPLLVLSAMKMETNVA 579
+V+KG+T+P SCF GRPGA+MPP E ++L ++G G + + D++SHA YPAV+ ++M E G L+ +DTRTF++GMK GQE++V +E GK L +KL+ V DP+E+GV ++ FELNGQPR+ IKDKSV G+VK R +A V+GSVGAPMPGVV+ KV GD+V G PL+ LSAMKMET V+
Sbjct: 37 RVVKGQTIPGTNMSCFSGRPGADMPPMDLGAEKKKLEEKWGPGSPNDSHSHVIRDVDVMSHAMYPAVYDEYMEHLTEFGQLNYVDTRTFLTGMKVGQELTVTLEPGKQLVVKLIGVGDPNEDGVVNIQFELNGQPRMAHIKDKSVGGEVKTRSRALKDVVGSVGAPMPGVVLETKVNKGDKVKHGDPLVSLSAMKMETLVS 237 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8443.16615.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig8443.16615.1 >prot_S-dermatodea_contig8443.16615.1 ID=prot_S-dermatodea_contig8443.16615.1|Name=mRNA_S-dermatodea_contig8443.16615.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=199bp MPPYKFDNEMRQLHGQYGLGVTERDLVSHAQYPAVFKDFMASREEHGDLSback to top mRNA from alignment at S-dermatodea_contig8443:740..9168+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig8443.16615.1 ID=mRNA_S-dermatodea_contig8443.16615.1|Name=mRNA_S-dermatodea_contig8443.16615.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=8429bp|location=Sequence derived from alignment at S-dermatodea_contig8443:740..9168+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig8443:740..9168+ >mRNA_S-dermatodea_contig8443.16615.1 ID=mRNA_S-dermatodea_contig8443.16615.1|Name=mRNA_S-dermatodea_contig8443.16615.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1194bp|location=Sequence derived from alignment at S-dermatodea_contig8443:740..9168+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |