mRNA_S-dermatodea_contig8442.16614.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8442.16614.1
Unique NamemRNA_S-dermatodea_contig8442.16614.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8442.16614.1 vs. uniprot
Match: D7FU81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU81_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 6.410e-25
Identity = 50/80 (62.50%), Postives = 58/80 (72.50%), Query Frame = 1 
Query:    1 IKVPKPRLWPSCAMPECRRRHYAWGMCISCTATFKEKHPMANFHQQGKRRANKPSFKYVGKDAEFTDSSEDESPRARGPS 240
            +KVP+PRLWPSC MP CRRRH+AWGMC  C A FK KHP  N   Q KR++ +P+ KY G DAE TDSS+DE  RA G S
Sbjct:  131 VKVPRPRLWPSCTMPACRRRHHAWGMCAPCLAEFKAKHPKCNPQAQ-KRKSGRPAHKYTGADAELTDSSDDEGSRATGKS 209
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8442.16614.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FU81_ECTSI6.410e-2562.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8442contigS-dermatodea_contig8442:2669..7622 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size292
Cds size291
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8442.16614.1prot_S-dermatodea_contig8442.16614.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8442 2669..7622 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925343.5493445-CDS-S-dermatodea_contig8442:2668..28001622925343.5493445-CDS-S-dermatodea_contig8442:2668..2800Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8442 2669..2800 -
1694079869.3867836-CDS-S-dermatodea_contig8442:2668..28001694079869.3867836-CDS-S-dermatodea_contig8442:2668..2800Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8442 2669..2800 -
1622925343.5596378-CDS-S-dermatodea_contig8442:3885..39481622925343.5596378-CDS-S-dermatodea_contig8442:3885..3948Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8442 3886..3948 -
1694079869.3968215-CDS-S-dermatodea_contig8442:3885..39481694079869.3968215-CDS-S-dermatodea_contig8442:3885..3948Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8442 3886..3948 -
1622925343.5708447-CDS-S-dermatodea_contig8442:7526..76221622925343.5708447-CDS-S-dermatodea_contig8442:7526..7622Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8442 7527..7622 -
1694079869.4070876-CDS-S-dermatodea_contig8442:7526..76221694079869.4070876-CDS-S-dermatodea_contig8442:7526..7622Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8442 7527..7622 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8442.16614.1

>prot_S-dermatodea_contig8442.16614.1 ID=prot_S-dermatodea_contig8442.16614.1|Name=mRNA_S-dermatodea_contig8442.16614.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=97bp
IKVPKPRLWPSCAMPECRRRHYAWGMCISCTATFKEKHPMANFHQQGKRR
ANKPSFKYVGKDAEFTDSSEDESPRARGPSKAKGKKEAGRGLGDGSD
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mRNA from alignment at S-dermatodea_contig8442:2669..7622-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8442.16614.1 ID=mRNA_S-dermatodea_contig8442.16614.1|Name=mRNA_S-dermatodea_contig8442.16614.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4954bp|location=Sequence derived from alignment at S-dermatodea_contig8442:2669..7622- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATCAAAGTGCCCAAGCCGCGGCTGTGGCCGAGCTGCGCCATGCCGGAGTG
CCGCAGGAGGCACTACGCCTGGGGGATGTGCATCTCGTGCACCGCGGTGA
GCAAAGCTGCTGTGTCATATTGTATATACTTTAAAGCAAGGTATAATAAA
CAACAATACAGCAGGATTATGTATCACACGTGGTGGGGATTTTAATTTTG
GGTATATTACACTACTCTGTACCGTCTGTTGAGAGTGGGAGGCCACGGCT
AAAAAAAATCGCCCGGGAGAGAGTGGTGACCGTTTGTTGGCACCGGTGGT
AAGCACCCCTTGGTCCTCACCTTCCCATTCTGACGTGAATCAAATCCTTT
AGCGTCGTCATCGTCATGGTCTTTTATTAGTATTGATTTGTACCGCTTTT
GACGTTTTTTAATAGCGATTTTAGAGTGACCATGCCCACACTATTTTTAT
TTATTGTTGTACGTTTTGGGTAACACAAATCATAGCGATGGTGTTCGAGG
GGCCTAAATTGATGCCAAACAAGTTGGTTTTAGAGCACGTTCGCTCAAGT
GTCGAAAAGAAAACTAGGATATTTTTCCTCACGGGCGTAGCCGTGGCTAC
CTACTTATTAGTAGTCGCCACGAACCCGGAATTAAACTATTATTATTAAT
ATTACGGAGGTAGGAGGTACACACAGTGATCAGGACAAAATGTGCCAAAC
AACACATGTGCCCAGCATATTAAACCATAATTCAATGTGTTCTGGCCTTT
TAGAAACATGTGCGATCTTAATCGTCCGGGCTGAAACACGCCAATCAAAA
ACTGAGATTTTTATTACAGGGTTGTTCGGGGCCAACGTGTGAAAGTAAAA
ACGAGAGGTGAAAACGCCGTTGAGCATACGTTTTGGTCCTCATTGCTGTG
TGTACCCCCGTCAAAAGAATGATGCAGATGCTCAGCCCAACGCGGTCAGT
TCTTCGTTCCGTGCTGACGCGATATGGCCGGTGCTGGCGAATACCTTGTA
CTTGTATTGGAGACCAAAGCGATGGTTTCTCCTTTCCCCCCCCTTAGGAT
TTAACTACAATACCTTCCCAATTTCGCGGTTGCTTTCTGCAATCGCGTTC
AAATCCGGTTTATCGGCCTTTCGGGCACACGCGTCCTCGCGCGACAAATG
ACTGCGCTTGCTTTCGCCCGGACCACTGAGTTTCCCCCTCTGGTTTTTGG
TTGACCGTGCTTCCGGATCGACCTCAAGTACAACGCGAGAGCGACGCGCG
ATAAGTTCAAGCACAGTGCGCGCTGCCGTCGATACGGGTATAGCCGGGGT
TTCCCCACGCGCGTAGTTTTTTTTTTTTGTCGCCTGAACTCTTACGTTTT
GTTTTTCGAGCCCATCATGATCGTAATAATGTCATAGCAGTAAGCGTAGC
GTAGATTCTGACAATTAAATGTGACTTCTTATTACAGAGGTACACAGTAA
TCAGGACCAAATATGCCAAACAGCACGATATAGGCATCTTTATGTACCAT
AACTCTACACGGGCTGGTCTTTCAACATCATGTGCGATCTTCCGGACTGA
AACATCAGACCAAAACTGAAACAAATCTTACAAGGTGTCCAGGCCAACGT
TTAAAACAGGAAGACATGAGTTACGCTACAGTAACTGTGTACCTCCGTTT
TATGTAGCCCATCATCATCGTGAACTATAGTAAAAGCGGTAAAAGAGTAA
AGTGAATTTATGACATTTACGTTTTGCGAGCTCATCATCATCGCGATCAC
TACACTAAGCGTAGCGTAGATTCTGACGTTTGATTTATAACTATTACGGA
GGAACACTATAATCAAGTAATGAGGACCAAATCTCATGACAATGAATACC
CAACTACAGTATTCCGACCATGAATACCCAAACAACAGAAATCTCACGAA
AAACAAAAAAGACACGAGATAGCGCCATCCACCTTGAAATCTCAATAATT
CCAGCCTATGCTGATTTTTCTAGGTTGAGATTTGTGGCAAATTTGGACCT
GTTAACTATTGTCCCCCGTAATATTATATTATTAATAGTACATAGGTACA
CAGTGATAAAGACTGAATGTTCCAAATCATAAATCTACATGGGCTGGCCT
GCCAACATGTTGTGCGATTTTCCGGCCTGGGAATTCAATCAAAAACTCAA
AACACATTCTACAAGAATACTTGAAAACGCTACAATATTCAGCAGAACTT
TGGTCGTGATTTCTGTGTACTGTATGATACCTCCGTAATATGTATGTATG
TAGGCCATCATCATCGTGAACTATAGTATAGCGGTAAAAGAGTAGAGTGA
ATTCTGAATTCTGACATTTACGTGTTGTGAGCTCAAGCTCATCATCGTCA
ATATTCAGCAGAACTTTGGTCCTGGTTTCTGTGTACGGTACCTACGTTAT
ATGTATGTGGCCCATCACAATCGTGAACTAAAGCGGTAAAGGAGTAGAGT
GAATTCTGAAGTCTGACAGTTACGTTTTGTGAGCTCAAGCTCATCATCGT
CGTCACAACGGTCAGCATAGCGCGTACATGATGGCAACTAAGTTTGGTGA
GCCCATCGGCATCGCGAATCGCAGTGTTGAGGTTAGCGTGTGAAAACCCC
CCGCTGCTGGTCTGCCGCGCCGTTGCGATCGCGTGCGTTGCCTCGGCGTG
TTGCGCGCGGCGGCCGTAGGGTGGACTGTGGCCGAATGAGCTGATATCGA
ACGGGGGCTAGGTTGCGAATGGAGAATAATATCTCGTGGTTTGATGTGTG
TGATGTGTGCTATTACGGAGGTACACACTATAATTAAGTCATCAGGACCA
AATATCATGACCATGAATACCCAACTATTCCGACCATGAACACCCAAACA
ACAGAAATCTCATGAAAAAACAACAAGACTCGAGATATGGCCATATAAAA
GAACATCGACCTCGAAATCTCGATAATCTCAGCCTGTTTTGATATTTCTA
GGTTGAGACTTGTGGAAAATTTGGACCTGTTAACTATGGCCCCCCGTAAA
TAGATATAGTGCAGTGCAAGTGTCTCCTCCATTGCGTTGTGTTTCACGCC
GCCCTCGTTTCCTGAGACCGGCGCCAGCAAAGAAAGCTATTGGTACTCAA
TTGCCCGAAGCGTCGTTGCGTTCTCTCGTCCCGTTTTCGCGCTCTACTGT
GGGCACATGACGGAGAACCCTCGGCAACAGCGATGGCTGCGCCTTTCCAA
TGTACCCCAACCGTGTTTTTGATATCTTGCTCCCCTTGGGGCTTCTCAAA
ACGAAGCTGCCGTACGCCTCTCCTTGTGGCGTAGGTATTTTTGTTAAGTT
TTAGCGCTTGGAACGTTTTAGCCTACACAAATTCCTATATGATTGCGTAG
CACACATCCTATACGACATCTGTAACACGAGAACAAACGTATGCTGTAGG
GATTTTTGGGCAAAAGGTGATGCCAAACAGCTTGATTTTAGAGGAGAGCG
ACCAAAGTAGGATTTTTCACCTCACGGGCGTAGTAGCCGTGGCTAGTTTG
GTTATTAATCACCCTGGACTCTTTGCGCATCTGACCACAAGTCGGGTCGG
AATTATCGGCTTCGTATTTGTGTGAAAATCAACCAATCAACCAACCAATC
CATCAATCACAATTCTAAATGTAACCGTGTTTTGACCCACGGACAACACC
GTGACCTGTTTATGGGTGCCGCAGACCTTCAAGGAGAAGCACCCCATGGC
GAACTTCCACCAGCAGGGAAAGCGGAGAGCCAACAAGGTGCGGGCCGTGC
GTGCGTACAGGGATGCAGGGAATCTGCGGAAGTTTTCGTGTTTGGTCGCA
AATCCCTGCTTGTGTTTTGTATCATGCCACCCAGGACCAAAACTCGCCTC
CTACTGTGTACGAGTAGTGGTATGGCAGGGTTCAAGAGCCGGAAGGAATT
CTCCGTGAATCAATTCGCTTTCGTCTACCACCAGGCACCAGGAGTTATCC
CTTTTTTATTGATTGGTTGGCGGGTTGATTTAATCACTTACAGCCGATCG
GCTAAATCCGACTCGGCTCGAGGTTAGATAGCTATATGTGTGTGTCTGTG
TGTGTGTATGTGTGTGTCGCGAGGGATTACCCCATATTTCTCTTGTCAAG
GAAAAATGCGAAACCAAAAGCCTACTTCTTCATGTATACGGTACTTGTTG
TAGGAAAGGAGGGAAACGAAACACACCAGAACGCATGATTGTCTGGCCAG
GATATACCTCAGGACAAAGACTCATGTCCTGTACGATACCATAACCATAT
ATCATCATACGAAGTACATGATAAGACACCATAGCATCATACGTATCAAG
TGAGCCTCCATAGGTGTAGCTTGGGCCATCTTCCCTCTTGAAAAGGTGGA
ACCCCAACGCTCGCTCTATGTTTCTGAAATGTTTACTTTGTTAGGGGGGC
GCTTGCGGCACGACCTGTGCAAGCCGCTTGCTGTGCAACGTGAACCTACC
TCTCCCTGCGGTTCGCCTGCTTGTTACGTCAGGAGTCTTTTTTTTAACCA
TTTCGTTTCCGCTGAAACCGCTCCAAGGTGACGCACGCACGAGAGTGCAC
CACTCGCATAGAGTATCCGGGTTTGGCGTCGCAAACGCAAGGGTTATGAC
CGTTAATAGTTATAGCGTCTGGTACGGTATCATCCTTGTGAATCGTAGCC
TCCCGGCCGGCGAAACCCTGACATACCGCTCGGTCCTGGGATTTTTCAGG
CGCGTAGTCTCTGGCCGTTTAGATACGACATGCGTTGAACACCCCCCCCC
CTCCCCCCCCGCTGCCGCCGGCGCCGCCCCGTCCCATATCTCCTCGTATC
ACGACGCATGGCACACGTCAAGCCCTCGTTCAAGTACGTGGGTAAGGATG
CCGAGTTCACAGACTCTTCCGAAGACGAATCCCCCCGCGCGCGCGGTCCG
AGCAAGGCCAAGGGGAAGAAGGAGGCCGGGAGGGGATTGGGAGACGGCAG
CGAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig8442:2669..7622-

>mRNA_S-dermatodea_contig8442.16614.1 ID=mRNA_S-dermatodea_contig8442.16614.1|Name=mRNA_S-dermatodea_contig8442.16614.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=582bp|location=Sequence derived from alignment at S-dermatodea_contig8442:2669..7622- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATCAAAGTGCCCAAGCCGCGGCTGTGGCCGAGCTGCGCCATGCCGGAGTG
CCGCAGGAGGCACTACGCCTGGGGGATGTGCATCTCGTGCACCGCGATCA
AAGTGCCCAAGCCGCGGCTGTGGCCGAGCTGCGCCATGCCGGAGTGCCGC
AGGAGGCACTACGCCTGGGGGATGTGCATCTCGTGCACCGCGACCTTCAA
GGAGAAGCACCCCATGGCGAACTTCCACCAGCAGGGAAAGCGGAGAGCCA
ACAAGACCTTCAAGGAGAAGCACCCCATGGCGAACTTCCACCAGCAGGGA
AAGCGGAGAGCCAACAAGCCCTCGTTCAAGTACGTGGGTAAGGATGCCGA
GTTCACAGACTCTTCCGAAGACGAATCCCCCCGCGCGCGCGGTCCGAGCA
AGGCCAAGGGGAAGAAGGAGGCCGGGAGGGGATTGGGAGACGGCAGCGAC
CCCTCGTTCAAGTACGTGGGTAAGGATGCCGAGTTCACAGACTCTTCCGA
AGACGAATCCCCCCGCGCGCGCGGTCCGAGCAAGGCCAAGGGGAAGAAGG
AGGCCGGGAGGGGATTGGGAGACGGCAGCGAC
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