mRNA_S-dermatodea_contig84382.16608.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig84382.16608.1 vs. uniprot
Match: D7FHF9_ECTSI (U2 small nuclear ribonucleoprotein auxiliary factor large subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHF9_ECTSI) HSP 1 Score: 105 bits (263), Expect = 3.630e-26 Identity = 50/59 (84.75%), Postives = 57/59 (96.61%), Query Frame = 1
Query: 4 QEECEKFGSVKSVHIPRPSTMSDQEKPGIGFVFVAFDAIDSSAKAAASLRARTFDGRKV 180
+EECEKFGSVKSVHIPRPST S+ EKPG+G+VFVAFDA+DS++KAAASLRARTFDGRKV
Sbjct: 208 KEECEKFGSVKSVHIPRPSTTSEAEKPGVGYVFVAFDAVDSASKAAASLRARTFDGRKV 266
BLAST of mRNA_S-dermatodea_contig84382.16608.1 vs. uniprot
Match: B3MBN0_DROAN (Splicing factor U2AF subunit n=1 Tax=Drosophila ananassae TaxID=7217 RepID=B3MBN0_DROAN) HSP 1 Score: 58.5 bits (140), Expect = 2.120e-8 Identity = 28/60 (46.67%), Postives = 37/60 (61.67%), Query Frame = 1
Query: 1 LQEECEKFGSVKSVHIPRPSTMSDQEKPGIGFVFVAFDAIDSSAKAAASLRARTFDGRKV 180
+Q+EC K+G V+S+ IPRP D K G G VFV F+++D KA +L R F GR V
Sbjct: 359 IQQECAKYGDVRSLKIPRPIPKGDSPKRGCGKVFVQFESVDDCQKAMRALSGRKFSGRIV 418
BLAST of mRNA_S-dermatodea_contig84382.16608.1 vs. uniprot
Match: A0A2C5XCZ7_9PEZI (Splicing factor U2AF subunit n=2 Tax=Ceratocystis TaxID=5157 RepID=A0A2C5XCZ7_9PEZI) HSP 1 Score: 55.5 bits (132), Expect = 2.620e-7 Identity = 23/60 (38.33%), Postives = 39/60 (65.00%), Query Frame = 1
Query: 1 LQEECEKFGSVKSVHIPRPSTMSDQEKPGIGFVFVAFDAIDSSAKAAASLRARTFDGRKV 180
+ EEC KFG++ + IPRP++ S ++ PG+G ++V F+ +++ KA +L R F R V
Sbjct: 518 VHEECSKFGTISELKIPRPTSGSSKQSPGVGKIYVKFETKEAAGKALRALAGRKFSDRTV 577
BLAST of mRNA_S-dermatodea_contig84382.16608.1 vs. uniprot
Match: A0A3P3YJC5_PLABS (RRM domain-containing protein n=2 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3YJC5_PLABS) HSP 1 Score: 55.1 bits (131), Expect = 3.450e-7 Identity = 25/61 (40.98%), Postives = 43/61 (70.49%), Query Frame = 1
Query: 1 LQEECEKFGSVKSVHIPRPSTMS-DQEKPGIGFVFVAFDAIDSSAKAAASLRARTFDGRKV 180
++EEC+KFG V+ V IP+PS + + PG+G ++V FD++D ++ A L+ R+F+G+ V
Sbjct: 277 VREECQKFGPVEQVWIPKPSADGPENDPPGVGKIWVQFDSVDHASAARDVLKTRSFNGKLV 337
BLAST of mRNA_S-dermatodea_contig84382.16608.1 vs. uniprot
Match: A0A0F4YUB3_TALEM (Splicing factor U2AF subunit n=1 Tax=Rasamsonia emersonii CBS 393.64 TaxID=1408163 RepID=A0A0F4YUB3_TALEM) HSP 1 Score: 54.7 bits (130), Expect = 4.890e-7 Identity = 25/60 (41.67%), Postives = 39/60 (65.00%), Query Frame = 1
Query: 1 LQEECEKFGSVKSVHIPRPSTMSDQEKPGIGFVFVAFDAIDSSAKAAASLRARTFDGRKV 180
+Q+EC K+G V + IPRP T ++ PG+G ++V FD+++S+ KA +L R F R V
Sbjct: 476 VQDECNKYGQVLELKIPRP-TGGSRQSPGVGKIYVKFDSVESATKALKALAGRKFSDRTV 534
BLAST of mRNA_S-dermatodea_contig84382.16608.1 vs. uniprot
Match: A0A061HM12_BLUGR (Splicing factor U2AF subunit (Fragment) n=1 Tax=Blumeria graminis f. sp. tritici 96224 TaxID=1268274 RepID=A0A061HM12_BLUGR) HSP 1 Score: 54.3 bits (129), Expect = 6.520e-7 Identity = 29/60 (48.33%), Postives = 38/60 (63.33%), Query Frame = 1
Query: 1 LQEECEKFGSVKSVHIPRPSTMSDQEKPGIGFVFVAFDAIDSSAKAAASLRARTFDGRKV 180
++EECEKFG V + +PRP+ S Q G+G +FV FD +S+AKA SL R F R V
Sbjct: 295 VKEECEKFGKVLDMKVPRPTGGSRQSN-GVGKIFVKFDTSESAAKALRSLAGRKFADRTV 353
BLAST of mRNA_S-dermatodea_contig84382.16608.1 vs. uniprot
Match: A0A6P4IX60_DROKI (splicing factor U2AF 50 kDa subunit-like n=1 Tax=Drosophila kikkawai TaxID=30033 RepID=A0A6P4IX60_DROKI) HSP 1 Score: 54.3 bits (129), Expect = 6.570e-7 Identity = 29/60 (48.33%), Postives = 38/60 (63.33%), Query Frame = 1
Query: 1 LQEECEKFGSVKSVHIPRPSTMSDQEKPGIGFVFVAFDAIDSSAKAAASLRARTFDGRKV 180
++EECEKFG V+SV +PRP + ++ PG G VFV FD+ KA L R F+GR V
Sbjct: 319 IREECEKFGVVRSVEMPRP--IEGEDVPGCGNVFVLFDSALDCQKAKEELCKRNFNGRAV 376
BLAST of mRNA_S-dermatodea_contig84382.16608.1 vs. uniprot
Match: F4PE51_BATDJ (Splicing factor U2AF subunit n=2 Tax=Batrachochytrium dendrobatidis TaxID=109871 RepID=F4PE51_BATDJ) HSP 1 Score: 54.3 bits (129), Expect = 6.690e-7 Identity = 28/60 (46.67%), Postives = 37/60 (61.67%), Query Frame = 1
Query: 1 LQEECEKFGSVKSVHIPRPSTMSDQEKPGIGFVFVAFDAIDSSAKAAASLRARTFDGRKV 180
+QEECEKFG++ + IPRP +S Q G+G +FV FD + SA A +L R F R V
Sbjct: 479 IQEECEKFGTILDIAIPRP--VSGQSNAGVGKIFVKFDNVKQSASAQHALAGRKFADRVV 536
BLAST of mRNA_S-dermatodea_contig84382.16608.1 vs. uniprot
Match: N1J9F2_BLUG1 (Splicing factor U2AF subunit n=2 Tax=Blumeria hordei TaxID=2867405 RepID=N1J9F2_BLUG1) HSP 1 Score: 54.3 bits (129), Expect = 6.700e-7 Identity = 29/60 (48.33%), Postives = 38/60 (63.33%), Query Frame = 1
Query: 1 LQEECEKFGSVKSVHIPRPSTMSDQEKPGIGFVFVAFDAIDSSAKAAASLRARTFDGRKV 180
++EECEKFG V + +PRP+ S Q G+G +FV FD +S+AKA SL R F R V
Sbjct: 518 VKEECEKFGKVLDMKVPRPTGGSRQSN-GVGKIFVKFDTSESAAKALRSLAGRKFADRTV 576
BLAST of mRNA_S-dermatodea_contig84382.16608.1 vs. uniprot
Match: A0A6A6BU92_9PEZI (Splicing factor U2AF subunit n=1 Tax=Aplosporella prunicola CBS 121167 TaxID=1176127 RepID=A0A6A6BU92_9PEZI) HSP 1 Score: 53.5 bits (127), Expect = 1.250e-6 Identity = 26/60 (43.33%), Postives = 38/60 (63.33%), Query Frame = 1
Query: 1 LQEECEKFGSVKSVHIPRPSTMSDQEKPGIGFVFVAFDAIDSSAKAAASLRARTFDGRKV 180
++EEC+KFG V + IPRPS + PG+G ++V +D +S+ KA +L R FD R V
Sbjct: 466 VREECQKFGQVLDLKIPRPS--GSRTNPGVGKIYVKYDTPESAQKALRALAGRKFDDRTV 523 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig84382.16608.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig84382.16608.1 >prot_S-dermatodea_contig84382.16608.1 ID=prot_S-dermatodea_contig84382.16608.1|Name=mRNA_S-dermatodea_contig84382.16608.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=67bp LQEECEKFGSVKSVHIPRPSTMSDQEKPGIGFVFVAFDAIDSSAKAAASLback to top mRNA from alignment at S-dermatodea_contig84382:480..680- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig84382.16608.1 ID=mRNA_S-dermatodea_contig84382.16608.1|Name=mRNA_S-dermatodea_contig84382.16608.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=201bp|location=Sequence derived from alignment at S-dermatodea_contig84382:480..680- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig84382:480..680- >mRNA_S-dermatodea_contig84382.16608.1 ID=mRNA_S-dermatodea_contig84382.16608.1|Name=mRNA_S-dermatodea_contig84382.16608.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at S-dermatodea_contig84382:480..680- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |