mRNA_S-dermatodea_contig84336.16604.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig84336.16604.1
Unique NamemRNA_S-dermatodea_contig84336.16604.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig84336.16604.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig84336contigS-dermatodea_contig84336:302..712 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size411
Cds size387
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925342.9394903-UTR-S-dermatodea_contig84336:301..3251622925342.9394903-UTR-S-dermatodea_contig84336:301..325Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig84336 302..325 +
1694079868.9925752-UTR-S-dermatodea_contig84336:301..3251694079868.9925752-UTR-S-dermatodea_contig84336:301..325Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig84336 302..325 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925342.949649-CDS-S-dermatodea_contig84336:325..7121622925342.949649-CDS-S-dermatodea_contig84336:325..712Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig84336 326..712 +
1694079869.0031567-CDS-S-dermatodea_contig84336:325..7121694079869.0031567-CDS-S-dermatodea_contig84336:325..712Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig84336 326..712 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig84336.16604.1prot_S-dermatodea_contig84336.16604.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig84336 326..712 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig84336.16604.1

>prot_S-dermatodea_contig84336.16604.1 ID=prot_S-dermatodea_contig84336.16604.1|Name=mRNA_S-dermatodea_contig84336.16604.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=129bp
MQMGNTDDVIQQHHEDLYMIRTSVRKPSDRDIVYRYNSPVRAWEELSRVY
DTSTHSSLLEVSSKYHNAKFKRGDDPERFCSMLEDYGVTLGGAGMQIPDA
VILAHFVDLLPVEYDAEKRAMFMLEQKDF
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mRNA from alignment at S-dermatodea_contig84336:302..712+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig84336.16604.1 ID=mRNA_S-dermatodea_contig84336.16604.1|Name=mRNA_S-dermatodea_contig84336.16604.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=411bp|location=Sequence derived from alignment at S-dermatodea_contig84336:302..712+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATTTGGAAGACCCGTGCAGACTTCATGCAGATGGGGAACACAGATGATGT
AATCCAGCAGCACCATGAGGATCTGTACATGATCAGGACTTCTGTAAGAA
AGCCATCAGATAGAGACATCGTGTACCGGTACAATTCACCGGTGCGGGCT
TGGGAAGAACTGTCCCGAGTGTACGACACTAGCACTCACTCATCATTGCT
TGAAGTGTCTAGCAAGTACCACAACGCGAAATTCAAACGGGGTGATGATC
CTGAACGATTTTGTTCCATGCTGGAAGATTACGGGGTAACTCTGGGTGGG
GCGGGAATGCAAATTCCTGACGCTGTCATCCTCGCACATTTCGTTGATCT
TTTGCCTGTCGAGTATGATGCTGAGAAGCGCGCCATGTTCATGTTGGAGC
AGAAGGACTTC
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Coding sequence (CDS) from alignment at S-dermatodea_contig84336:302..712+

>mRNA_S-dermatodea_contig84336.16604.1 ID=mRNA_S-dermatodea_contig84336.16604.1|Name=mRNA_S-dermatodea_contig84336.16604.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=774bp|location=Sequence derived from alignment at S-dermatodea_contig84336:302..712+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCAGATGGGGAACACAGATGATGTAATCCAGCAGCACCATGAGGATCT
GTACATGATCAGGACTTCTGTAAGAAAGCCATCAGATAGAGACATCGTGT
ACCGGTACAATTCACCGGTGCGGGCTTGGGAAGAACTGTCCCGAGTGTAC
GACACTAGCACTCACTCATCATTGCTTGAAGTGTCTAGCAAGTACCACAA
CGCGAAATTCAAACGGGGTGATGATCCTGAACGATTTTGTTCCATGCTGG
AAGATTACGGGGTAACTCTGGGTGGGGCGGGAATGCAAATTCCTGACGCT
GTCATCCTCGCACATTTCGTTGATCTTTTGCCTGTCGAGTATGATGCTGA
GAAGCGCGCCATGTTCATGTTGGAGCAGAAGGACTTCATGCAGATGGGGA
ACACAGATGATGTAATCCAGCAGCACCATGAGGATCTGTACATGATCAGG
ACTTCTGTAAGAAAGCCATCAGATAGAGACATCGTGTACCGGTACAATTC
ACCGGTGCGGGCTTGGGAAGAACTGTCCCGAGTGTACGACACTAGCACTC
ACTCATCATTGCTTGAAGTGTCTAGCAAGTACCACAACGCGAAATTCAAA
CGGGGTGATGATCCTGAACGATTTTGTTCCATGCTGGAAGATTACGGGGT
AACTCTGGGTGGGGCGGGAATGCAAATTCCTGACGCTGTCATCCTCGCAC
ATTTCGTTGATCTTTTGCCTGTCGAGTATGATGCTGAGAAGCGCGCCATG
TTCATGTTGGAGCAGAAGGACTTC
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