mRNA_S-dermatodea_contig84246.16594.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig84246.16594.1
Unique NamemRNA_S-dermatodea_contig84246.16594.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig84246.16594.1 vs. uniprot
Match: D8LKD0_ECTSI (SsrA-binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKD0_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 2.360e-16
Identity = 36/40 (90.00%), Postives = 39/40 (97.50%), Query Frame = 1
Query:   10 RKARRNYELIEKFEAGIELLGSEVKSCRMSKINMDEGFAQ 129
            RKARRNYE++EKF AGIEL+GSEVKSCRMSKINMDEGFAQ
Sbjct:    4 RKARRNYEILEKFVAGIELVGSEVKSCRMSKINMDEGFAQ 43          
BLAST of mRNA_S-dermatodea_contig84246.16594.1 vs. uniprot
Match: A0A7C4XE48_9BACT (SsrA-binding protein n=1 Tax=Candidatus Omnitrophica bacterium TaxID=2035772 RepID=A0A7C4XE48_9BACT)

HSP 1 Score: 59.3 bits (142), Expect = 7.470e-10
Identity = 28/43 (65.12%), Postives = 36/43 (83.72%), Query Frame = 1
Query:    1 ASRRKARRNYELIEKFEAGIELLGSEVKSCRMSKINMDEGFAQ 129
            A+ RKARR+YE+IE FE GIEL GSEVKS R S++N+D+ FA+
Sbjct:    5 ATNRKARRDYEIIEAFECGIELKGSEVKSLRQSRMNIDDSFAR 47          
BLAST of mRNA_S-dermatodea_contig84246.16594.1 vs. uniprot
Match: A0A7S4FCI8_CHRCT (Hypothetical protein (Fragment) n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4FCI8_CHRCT)

HSP 1 Score: 58.5 bits (140), Expect = 2.290e-9
Identity = 25/40 (62.50%), Postives = 35/40 (87.50%), Query Frame = 1
Query:   10 RKARRNYELIEKFEAGIELLGSEVKSCRMSKINMDEGFAQ 129
            R+AR+NYEL+E++EAGI L+G+EVKSCR  KIN+ +G+ Q
Sbjct:   40 RQARQNYELLEEYEAGISLVGTEVKSCRAGKINLRDGYCQ 79          
BLAST of mRNA_S-dermatodea_contig84246.16594.1 vs. uniprot
Match: A0A235BUE1_9BACT (SsrA-binding protein n=1 Tax=candidate division WOR-3 bacterium JGI_Cruoil_03_51_56 TaxID=1973747 RepID=A0A235BUE1_9BACT)

HSP 1 Score: 57.4 bits (137), Expect = 3.930e-9
Identity = 27/43 (62.79%), Postives = 36/43 (83.72%), Query Frame = 1
Query:    1 ASRRKARRNYELIEKFEAGIELLGSEVKSCRMSKINMDEGFAQ 129
            A+ RKA  NY ++EKFEAGIEL G+EVKS R +KI++DEG+A+
Sbjct:    6 ATNRKALHNYIILEKFEAGIELAGTEVKSLRAAKISLDEGYAK 48          
BLAST of mRNA_S-dermatodea_contig84246.16594.1 vs. uniprot
Match: A0A7T5E3S4_9CYAN (SsrA-binding protein n=2 Tax=Cyanobacteria TaxID=1117 RepID=A0A7T5E3S4_9CYAN)

HSP 1 Score: 57.4 bits (137), Expect = 4.530e-9
Identity = 26/40 (65.00%), Postives = 33/40 (82.50%), Query Frame = 1
Query:   10 RKARRNYELIEKFEAGIELLGSEVKSCRMSKINMDEGFAQ 129
            R+AR  YE++E +EAGIELLGSEVKS R  K+N+ +GFAQ
Sbjct:   15 RQARHEYEILETYEAGIELLGSEVKSIRQGKVNLRDGFAQ 54          
BLAST of mRNA_S-dermatodea_contig84246.16594.1 vs. uniprot
Match: D6GTG8_FILAD (SsrA-binding protein n=1 Tax=Filifactor alocis (strain ATCC 35896 / D40 B5) TaxID=546269 RepID=D6GTG8_FILAD)

HSP 1 Score: 57.0 bits (136), Expect = 5.950e-9
Identity = 27/41 (65.85%), Postives = 33/41 (80.49%), Query Frame = 1
Query:    1 ASRRKARRNYELIEKFEAGIELLGSEVKSCRMSKINMDEGF 123
            A  RKAR NYE++E +EAGIEL G+EVKS R SK+N+ EGF
Sbjct:   10 AKNRKARFNYEILETYEAGIELKGTEVKSVRASKVNLTEGF 50          
BLAST of mRNA_S-dermatodea_contig84246.16594.1 vs. uniprot
Match: UPI00048D9160 (SsrA-binding protein SmpB n=1 Tax=Proteocatella sphenisci TaxID=181070 RepID=UPI00048D9160)

HSP 1 Score: 56.6 bits (135), Expect = 8.100e-9
Identity = 26/41 (63.41%), Postives = 34/41 (82.93%), Query Frame = 1
Query:    1 ASRRKARRNYELIEKFEAGIELLGSEVKSCRMSKINMDEGF 123
            A  +KAR NYE+IE +EAGIEL G+EVKS RMSK+N+ +G+
Sbjct:    8 AKNKKARFNYEIIETYEAGIELKGTEVKSIRMSKVNISDGY 48          
BLAST of mRNA_S-dermatodea_contig84246.16594.1 vs. uniprot
Match: A0A6H2NLS0_9CYAN (SsrA-binding protein n=1 Tax=Leptolyngbya sp. LCM1.Bin17 TaxID=2480211 RepID=A0A6H2NLS0_9CYAN)

HSP 1 Score: 56.2 bits (134), Expect = 1.260e-8
Identity = 25/40 (62.50%), Postives = 33/40 (82.50%), Query Frame = 1
Query:   10 RKARRNYELIEKFEAGIELLGSEVKSCRMSKINMDEGFAQ 129
            R+AR  YE++E +EAGIELLGSEVKS R  K+N+ +G+AQ
Sbjct:   15 RQARHQYEILETYEAGIELLGSEVKSIRQGKVNLRDGYAQ 54          
BLAST of mRNA_S-dermatodea_contig84246.16594.1 vs. uniprot
Match: UPI0019EE95A5 (SsrA-binding protein SmpB n=1 Tax=Leptolyngbyaceae cyanobacterium M65_K2018_010 TaxID=2747810 RepID=UPI0019EE95A5)

HSP 1 Score: 57.4 bits (137), Expect = 1.350e-8
Identity = 26/40 (65.00%), Postives = 33/40 (82.50%), Query Frame = 1
Query:   10 RKARRNYELIEKFEAGIELLGSEVKSCRMSKINMDEGFAQ 129
            R+AR  YE++E FEAGIELLGSEVKS R  K+N+ +G+AQ
Sbjct:  107 RQARHQYEILETFEAGIELLGSEVKSIRQGKVNLRDGYAQ 146          
BLAST of mRNA_S-dermatodea_contig84246.16594.1 vs. uniprot
Match: A0A7C5UCM0_9BACT (SsrA-binding protein n=1 Tax=Armatimonadetes bacterium TaxID=2033014 RepID=A0A7C5UCM0_9BACT)

HSP 1 Score: 55.8 bits (133), Expect = 1.580e-8
Identity = 25/43 (58.14%), Postives = 35/43 (81.40%), Query Frame = 1
Query:    1 ASRRKARRNYELIEKFEAGIELLGSEVKSCRMSKINMDEGFAQ 129
            A  R+A+R+YE++E +EAGI LLGSEVKS R  ++N+ EGFA+
Sbjct:    5 AVNRRAKRDYEILETYEAGIALLGSEVKSVRAGRVNLSEGFAK 47          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig84246.16594.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKD0_ECTSI2.360e-1690.00SsrA-binding protein n=1 Tax=Ectocarpus siliculosu... [more]
A0A7C4XE48_9BACT7.470e-1065.12SsrA-binding protein n=1 Tax=Candidatus Omnitrophi... [more]
A0A7S4FCI8_CHRCT2.290e-962.50Hypothetical protein (Fragment) n=1 Tax=Chrysotila... [more]
A0A235BUE1_9BACT3.930e-962.79SsrA-binding protein n=1 Tax=candidate division WO... [more]
A0A7T5E3S4_9CYAN4.530e-965.00SsrA-binding protein n=2 Tax=Cyanobacteria TaxID=1... [more]
D6GTG8_FILAD5.950e-965.85SsrA-binding protein n=1 Tax=Filifactor alocis (st... [more]
UPI00048D91608.100e-963.41SsrA-binding protein SmpB n=1 Tax=Proteocatella sp... [more]
A0A6H2NLS0_9CYAN1.260e-862.50SsrA-binding protein n=1 Tax=Leptolyngbya sp. LCM1... [more]
UPI0019EE95A51.350e-865.00SsrA-binding protein SmpB n=1 Tax=Leptolyngbyaceae... [more]
A0A7C5UCM0_9BACT1.580e-858.14SsrA-binding protein n=1 Tax=Armatimonadetes bacte... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig84246contigS-dermatodea_contig84246:117..245 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.1
Seed ortholog evalue8.9e-12
Seed eggNOG ortholog2880.D8LKD0
EggNOG free text desc.SmpB protein
EggNOG OGs2S5AD@2759,COG0691@1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size129
Cds size129
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925342.2915123-CDS-S-dermatodea_contig84246:116..2451622925342.2915123-CDS-S-dermatodea_contig84246:116..245Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig84246 117..245 +
1694079868.5679953-CDS-S-dermatodea_contig84246:116..2451694079868.5679953-CDS-S-dermatodea_contig84246:116..245Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig84246 117..245 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig84246.16594.1prot_S-dermatodea_contig84246.16594.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig84246 117..245 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig84246.16594.1

>prot_S-dermatodea_contig84246.16594.1 ID=prot_S-dermatodea_contig84246.16594.1|Name=mRNA_S-dermatodea_contig84246.16594.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=43bp
ASRRKARRNYELIEKFEAGIELLGSEVKSCRMSKINMDEGFAQ
back to top

mRNA from alignment at S-dermatodea_contig84246:117..245+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig84246.16594.1 ID=mRNA_S-dermatodea_contig84246.16594.1|Name=mRNA_S-dermatodea_contig84246.16594.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=129bp|location=Sequence derived from alignment at S-dermatodea_contig84246:117..245+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCATCCCGCAGGAAGGCGAGGCGAAACTACGAGCTCATAGAAAAATTCGA GGCCGGGATTGAGCTTCTCGGCTCGGAGGTGAAATCCTGCCGAATGTCGA AGATCAACATGGACGAAGGTTTTGCGCAG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig84246:117..245+

>mRNA_S-dermatodea_contig84246.16594.1 ID=mRNA_S-dermatodea_contig84246.16594.1|Name=mRNA_S-dermatodea_contig84246.16594.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=258bp|location=Sequence derived from alignment at S-dermatodea_contig84246:117..245+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCATCCCGCAGGAAGGCGAGGCGAAACTACGAGCTCATAGAAAAATTCGA
GGCCGGGATTGAGCTTCTCGGCTCGGAGGTGAAATCCTGCCGAATGTCGA
AGATCAACATGGACGAAGGTTTTGCGCAGGCATCCCGCAGGAAGGCGAGG
CGAAACTACGAGCTCATAGAAAAATTCGAGGCCGGGATTGAGCTTCTCGG
CTCGGAGGTGAAATCCTGCCGAATGTCGAAGATCAACATGGACGAAGGTT
TTGCGCAG
back to top