mRNA_S-dermatodea_contig842.16587.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig842.16587.1
Unique NamemRNA_S-dermatodea_contig842.16587.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig842.16587.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig842contigS-dermatodea_contig842:18109..18456 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size348
Cds size348
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925341.8457909-CDS-S-dermatodea_contig842:18108..184561622925341.8457909-CDS-S-dermatodea_contig842:18108..18456Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig842 18109..18456 +
1694079868.2867994-CDS-S-dermatodea_contig842:18108..184561694079868.2867994-CDS-S-dermatodea_contig842:18108..18456Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig842 18109..18456 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig842.16587.1prot_S-dermatodea_contig842.16587.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig842 18109..18456 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig842.16587.1

>prot_S-dermatodea_contig842.16587.1 ID=prot_S-dermatodea_contig842.16587.1|Name=mRNA_S-dermatodea_contig842.16587.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=116bp
NTSLYQTQIKSIGRFPPPKTKTAHQNKTYSPLSPSLCTTHPRRSTEEEPF
FPSTQIRIDQPINRFACCPLAKIPHLWLPLSWQPPDATLFSKPAPAPTPA
SAPVTHDDASSWHRW*
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mRNA from alignment at S-dermatodea_contig842:18109..18456+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig842.16587.1 ID=mRNA_S-dermatodea_contig842.16587.1|Name=mRNA_S-dermatodea_contig842.16587.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=348bp|location=Sequence derived from alignment at S-dermatodea_contig842:18109..18456+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AACACGTCCCTCTACCAAACCCAGATCAAATCAATCGGGCGGTTTCCACC
ACCAAAAACCAAAACCGCACACCAGAACAAAACCTACTCTCCCCTCTCTC
CCTCTCTCTGTACAACCCACCCCCGGCGAAGCACGGAAGAAGAGCCTTTC
TTTCCTTCCACTCAAATCAGAATTGACCAGCCAATCAACCGCTTCGCATG
TTGTCCGCTAGCGAAAATACCACACCTTTGGCTGCCGCTGTCATGGCAGC
CTCCTGACGCCACCCTCTTCTCGAAACCCGCTCCCGCCCCCACCCCCGCC
TCCGCTCCCGTTACTCACGACGACGCTTCCTCCTGGCACCGATGGTAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig842:18109..18456+

>mRNA_S-dermatodea_contig842.16587.1 ID=mRNA_S-dermatodea_contig842.16587.1|Name=mRNA_S-dermatodea_contig842.16587.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at S-dermatodea_contig842:18109..18456+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AACACGTCCCTCTACCAAACCCAGATCAAATCAATCGGGCGGTTTCCACC
ACCAAAAACCAAAACCGCACACCAGAACAAAACCTACTCTCCCCTCTCTC
CCTCTCTCTGTACAACCCACCCCCGGCGAAGCACGGAAGAAGAGCCTTTC
TTTCCTTCCACTCAAATCAGAATTGACCAGCCAATCAACCGCTTCGCATG
TTGTCCGCTAGCGAAAATACCACACCTTTGGCTGCCGCTGTCATGGCAGC
CTCCTGACGCCACCCTCTTCTCGAAACCCGCTCCCGCCCCCACCCCCGCC
TCCGCTCCCGTTACTCACGACGACGCTTCCTCCTGGCACCGATGGTAGAA
CACGTCCCTCTACCAAACCCAGATCAAATCAATCGGGCGGTTTCCACCAC
CAAAAACCAAAACCGCACACCAGAACAAAACCTACTCTCCCCTCTCTCCC
TCTCTCTGTACAACCCACCCCCGGCGAAGCACGGAAGAAGAGCCTTTCTT
TCCTTCCACTCAAATCAGAATTGACCAGCCAATCAACCGCTTCGCATGTT
GTCCGCTAGCGAAAATACCACACCTTTGGCTGCCGCTGTCATGGCAGCCT
CCTGACGCCACCCTCTTCTCGAAACCCGCTCCCGCCCCCACCCCCGCCTC
CGCTCCCGTTACTCACGACGACGCTTCCTCCTGGCACCGATGGTAG
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