mRNA_S-dermatodea_contig8400.16573.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8400.16573.1
Unique NamemRNA_S-dermatodea_contig8400.16573.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8400.16573.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8400contigS-dermatodea_contig8400:386..1105 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size720
Cds size720
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925340.7156-CDS-S-dermatodea_contig8400:385..11051622925340.7156-CDS-S-dermatodea_contig8400:385..1105Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8400 386..1105 +
1694079867.4198835-CDS-S-dermatodea_contig8400:385..11051694079867.4198835-CDS-S-dermatodea_contig8400:385..1105Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8400 386..1105 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8400.16573.1prot_S-dermatodea_contig8400.16573.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8400 386..1105 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8400.16573.1

>prot_S-dermatodea_contig8400.16573.1 ID=prot_S-dermatodea_contig8400.16573.1|Name=mRNA_S-dermatodea_contig8400.16573.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=240bp
MESSAEALARHRSLCGHGATAWLRAIPSDRDRVVTPVECVLALRRTLGVE
TDLRRVCPGTNCNAGATTRHGRCCNRTGGQNPQHHALANRLTRTLRAMSI
PATAEDRSPFDSAAFGDLAMDISIPPGALPNAASPDYRNKRLLVDVTIAD
PHASSHLRGGSPAGSAHRDGSAAASGEVRKHAHYEGADRQTVDPRSFKLV
PLAVEVFGRIGSEGATFLDELATSISDGASAGSPRKGTVL
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mRNA from alignment at S-dermatodea_contig8400:386..1105+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8400.16573.1 ID=mRNA_S-dermatodea_contig8400.16573.1|Name=mRNA_S-dermatodea_contig8400.16573.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=720bp|location=Sequence derived from alignment at S-dermatodea_contig8400:386..1105+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGAGTCCAGCGCGGAGGCCCTCGCCCGACACCGGAGCCTTTGTGGACA
CGGGGCCACCGCCTGGCTACGGGCCATTCCATCCGACCGCGATCGGGTGG
TAACACCGGTGGAGTGCGTGTTGGCGCTGCGGCGCACCCTCGGCGTAGAG
ACGGATCTACGCCGGGTTTGCCCCGGGACCAACTGCAACGCCGGCGCCAC
CACGCGCCATGGACGTTGCTGCAACCGCACGGGTGGCCAGAACCCCCAGC
ATCACGCCCTCGCGAACCGTCTGACGAGGACTCTCCGAGCCATGTCGATC
CCCGCCACAGCCGAGGACCGTTCGCCCTTCGACTCCGCCGCCTTCGGGGA
CCTCGCCATGGACATTTCCATTCCCCCAGGCGCCCTGCCCAATGCCGCTT
CCCCCGATTACAGGAACAAAAGGCTCCTCGTCGATGTCACCATCGCCGAC
CCCCACGCCTCCTCCCACCTGCGCGGCGGTTCGCCAGCTGGCAGCGCCCA
CCGCGACGGGAGCGCTGCCGCCTCCGGAGAAGTCCGAAAACACGCCCACT
ACGAGGGTGCCGACCGCCAGACGGTCGACCCCCGTAGCTTTAAACTAGTG
CCGCTCGCGGTCGAAGTGTTTGGACGGATTGGGTCGGAGGGCGCCACGTT
CCTCGACGAGCTGGCAACGAGCATCAGCGACGGAGCTTCGGCTGGTTCTC
CACGGAAGGGCACGGTTCTC
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Coding sequence (CDS) from alignment at S-dermatodea_contig8400:386..1105+

>mRNA_S-dermatodea_contig8400.16573.1 ID=mRNA_S-dermatodea_contig8400.16573.1|Name=mRNA_S-dermatodea_contig8400.16573.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1440bp|location=Sequence derived from alignment at S-dermatodea_contig8400:386..1105+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGAGTCCAGCGCGGAGGCCCTCGCCCGACACCGGAGCCTTTGTGGACA
CGGGGCCACCGCCTGGCTACGGGCCATTCCATCCGACCGCGATCGGGTGG
TAACACCGGTGGAGTGCGTGTTGGCGCTGCGGCGCACCCTCGGCGTAGAG
ACGGATCTACGCCGGGTTTGCCCCGGGACCAACTGCAACGCCGGCGCCAC
CACGCGCCATGGACGTTGCTGCAACCGCACGGGTGGCCAGAACCCCCAGC
ATCACGCCCTCGCGAACCGTCTGACGAGGACTCTCCGAGCCATGTCGATC
CCCGCCACAGCCGAGGACCGTTCGCCCTTCGACTCCGCCGCCTTCGGGGA
CCTCGCCATGGACATTTCCATTCCCCCAGGCGCCCTGCCCAATGCCGCTT
CCCCCGATTACAGGAACAAAAGGCTCCTCGTCGATGTCACCATCGCCGAC
CCCCACGCCTCCTCCCACCTGCGCGGCGGTTCGCCAGCTGGCAGCGCCCA
CCGCGACGGGAGCGCTGCCGCCTCCGGAGAAGTCCGAAAACACGCCCACT
ACGAGGGTGCCGACCGCCAGACGGTCGACCCCCGTAGCTTTAAACTAGTG
CCGCTCGCGGTCGAAGTGTTTGGACGGATTGGGTCGGAGGGCGCCACGTT
CCTCGACGAGCTGGCAACGAGCATCAGCGACGGAGCTTCGGCTGGTTCTC
CACGGAAGGGCACGGTTCTCATGGAGTCCAGCGCGGAGGCCCTCGCCCGA
CACCGGAGCCTTTGTGGACACGGGGCCACCGCCTGGCTACGGGCCATTCC
ATCCGACCGCGATCGGGTGGTAACACCGGTGGAGTGCGTGTTGGCGCTGC
GGCGCACCCTCGGCGTAGAGACGGATCTACGCCGGGTTTGCCCCGGGACC
AACTGCAACGCCGGCGCCACCACGCGCCATGGACGTTGCTGCAACCGCAC
GGGTGGCCAGAACCCCCAGCATCACGCCCTCGCGAACCGTCTGACGAGGA
CTCTCCGAGCCATGTCGATCCCCGCCACAGCCGAGGACCGTTCGCCCTTC
GACTCCGCCGCCTTCGGGGACCTCGCCATGGACATTTCCATTCCCCCAGG
CGCCCTGCCCAATGCCGCTTCCCCCGATTACAGGAACAAAAGGCTCCTCG
TCGATGTCACCATCGCCGACCCCCACGCCTCCTCCCACCTGCGCGGCGGT
TCGCCAGCTGGCAGCGCCCACCGCGACGGGAGCGCTGCCGCCTCCGGAGA
AGTCCGAAAACACGCCCACTACGAGGGTGCCGACCGCCAGACGGTCGACC
CCCGTAGCTTTAAACTAGTGCCGCTCGCGGTCGAAGTGTTTGGACGGATT
GGGTCGGAGGGCGCCACGTTCCTCGACGAGCTGGCAACGAGCATCAGCGA
CGGAGCTTCGGCTGGTTCTCCACGGAAGGGCACGGTTCTC
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