mRNA_S-dermatodea_contig840.16572.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig840.16572.1
Unique NamemRNA_S-dermatodea_contig840.16572.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig840.16572.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig840contigS-dermatodea_contig840:7023..11683 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size278
Cds size276
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig840.16572.1prot_S-dermatodea_contig840.16572.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig840 7024..11683 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925340.6512902-CDS-S-dermatodea_contig840:7023..71131622925340.6512902-CDS-S-dermatodea_contig840:7023..7113Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig840 7024..7113 -
1694079867.3929014-CDS-S-dermatodea_contig840:7023..71131694079867.3929014-CDS-S-dermatodea_contig840:7023..7113Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig840 7024..7113 -
1622925340.663575-CDS-S-dermatodea_contig840:11204..113291622925340.663575-CDS-S-dermatodea_contig840:11204..11329Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig840 11205..11329 -
1694079867.4016995-CDS-S-dermatodea_contig840:11204..113291694079867.4016995-CDS-S-dermatodea_contig840:11204..11329Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig840 11205..11329 -
1622925340.6812577-CDS-S-dermatodea_contig840:11622..116831622925340.6812577-CDS-S-dermatodea_contig840:11622..11683Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig840 11623..11683 -
1694079867.410482-CDS-S-dermatodea_contig840:11622..116831694079867.410482-CDS-S-dermatodea_contig840:11622..11683Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig840 11623..11683 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig840.16572.1

>prot_S-dermatodea_contig840.16572.1 ID=prot_S-dermatodea_contig840.16572.1|Name=mRNA_S-dermatodea_contig840.16572.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=92bp
PDGSRRQRLLCSRHFTEGRQAGASAVEAGDANEVEDEAGGQVLAKKRKRT
QRVERFPLQVQKVSALVQESFPNPSRTEFTPLASEDNSDQSR
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mRNA from alignment at S-dermatodea_contig840:7023..11683-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig840.16572.1 ID=mRNA_S-dermatodea_contig840.16572.1|Name=mRNA_S-dermatodea_contig840.16572.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4661bp|location=Sequence derived from alignment at S-dermatodea_contig840:7023..11683- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCGGATGGCAGCAGACGTCAAAGGTTGCTCTGCTCTCGACACTTCACGGA
AGGCCGTCAAGGTCAGCATGTTGATGTACACACTTCATATTCCAATGTAT
TCGAGTAGTGTAATGCGATGGTGTGCGAATGCATATGAAAAACCCGCCTT
GTGAGTTCGGTTTGTCATCGTGCGATCTCTGTTGCATTGTTTCCGGAAAC
CATAACGACCCGAGCATGACCGCTGGCTGTTTGTGCGCCACCACGTCCAT
GTTTTGTTTTAGTCTCGCCACGATCTTCACTTGTTGACAGTTTCGACGTT
CTTGTCGTGAGACGAATTTATTCGTTTATTCCACGTTTTTGACTTTCTGT
CTAGCTGGAGCATCAGCCGTGGAGGCAGGAGATGCCAATGAAGTGGAAGA
TGAAGCTGGTGGGCAGGTTCTCGCGAAAAAAAGAAAGCGGACACAGAGGG
TCGAGCGCTTCCCACTGCAAGTGCAAAAGGTATGTGCCCTGTTTTCCTTG
GAGCAGTACTCTGGTTTACGTGGTTATAGTGGCGGGGAGGTAAGAAATCG
GAAGCGCTACAGGAATTGCCTGGCCCATACGTGTTTCCTTCCGATAGCTT
AGAGATGTGGATTAAACCTAGAATCGAACACCCAGCTGTGGGAGGGACTC
GCACGGTAAATATATTTAATAGAACCCCCTCAGCTCTGCCCGATTGTATA
AATGTCAGACCACACCTGTGTTAGGAGTACATAGATACAGCGTGGGCGAT
TGTGGCCTATCGTATTTTTCAATCGCTACAAACATATGTTTTATCTTTTG
AGACCTGATACTCTGCGTGGCCTTGTCCTCATCCCCGATTGGTGGTTTGT
ACTTTCTTCTGCAACAATTACATGTACGAGTTAGCCGTACTCCATGTCGA
AGCGAATGGGGATCTTGAGGTACACTGTCCGCCGTAAATGTTGCCTCGCA
GAACTCCCTGGCGCCTTCATATTTTGTTCCTTCGCCATTTCGAGATATAA
GATGACACGTTTTCGGAACAATGAAACGATAATTTGAGAAGGGGCCGTGC
TGAAAATCGCAGGGTATCGTAGTTTTAACATTTGGGGCCCCAACTTTTCA
ACAAGCCGTAACGTTGATATGCGATGCTGCGGCGACCACCACCGCCTCCG
CAGAAGTACTTGATTCTCCACGCCGAGCGAGTAATTTGCTGCCTTTTAGA
GCAAAAGCGTCGTACTGCCGGGCGATTTGAGGCTAACTAGACTTATGATT
TGGGCAAGTTTGTCGTCCTACCTACAAGTACTACTTACACGGGTAGTAGT
GTCGATGATAGCGGGACGCCATGTTTTTCGACTTCCCGCTTAGGGCGCTG
CTGCCACCAAAACGCACGTTTTGTCGGATTCCTGACTCACAGCGACGTCA
CGATGAGCAGTTTGTAAATGAACTATAATTCAGTGGATGTCCTGCATCAA
ACAGAGAGTCACGTCTAGCAAGACTTCCACACACCCGCTTCAGTCAACAA
GAACAGCAGCAGCGGCAATTTTCCGCACGGTGACGTGTTATCCCTGCACA
AACTGTCAGTTGTTCGATGGGATTATAAGTCACCATAAGTTTTCCAATCA
AAATACGAATATCTCGAGACAGGGTGACGGCGTGCAATACCTGAGAAATC
CCCCCTGGCAAGTTTCCTTGGTCATCGCCCTCCTGCTACGGTTTGCGGCA
GGCGTTTGGAAATATTTTACGCCTTGTTGGCCTAACATGTGCTAGCAGAG
TTTGTTTCATTGACCGCCGCGGTGGCCTTGATCCAGCCTTTTGTGCAGGT
CGCATCCGTGTCGTCATCGACTGTCGGCTTTTTGTGTAGGCCCTCTTGAC
CTGCACTGCAAGCAATGCAGATTTTTATTTTGTATGATAAGTTGAACCTA
TGGATTCATGTTTTTTATTGGTGATAGGTACCGACAAACTCTACGAACTG
GTCCACAGACATAGAGAACTTTTGATTGTGGGCCTTCAAGATGGAAGCGG
ATGCGAGTTATTGGAAGCAAGAAGAGCGAGCCATCGCAAGAGCCACATCA
TTTATTTATGGATCATACAGGGTTCATATAAGTTTGTATTTTGTTGACTC
GTTATGTTTTTCCGAGGGACCCCAAACACACAGCTGTCGGTCTTACGAAT
TTTGAGAAAGTTGTAAAAGCATCGATATGCAGGGGATGAGGAATCAATCC
AGTCCATTTAGGTATTCTGGGTCTCGCAGCAGGTGCAGCACGTCGCGTAC
ACCACCTGGCCGTACACCGAAGCTTACTGACTGAATGTAGGTTTTATTTT
CTATTTTCGTTCATACTCTTCGTGTCCACCCTGCCCCGACGTCGATAATT
TTGTCGGGGGGGTGTTTCTGGCAAGTCGGGCCAGATTCAACCTAGAGAGG
TGATGCCTTCTCGCCACTGAAACTGGTCTGTCGTTAGATCAGCAGGCGGG
TGTACAAGAGTTAAAAAATAGCGGGGTCACCTGGTTGTCCTCATCACGAA
ACATCCTCAGGAGGCATCGTGGGTGAGGTGGTCCACGTTGAGGCAGGTGA
CATCGTCGCCGAGAGATCAGGCGTGTCAGATAGAACGCTCGTTACACTAT
GCGCCTGTCCTGAGATGGCAGGAACGCCCTCGCGTCTTTCTTTGGCGCGT
GGATTGGGTGAAGAAGGGGTGCGACCGCCGGCGTGCGAGGTGGGATGGCT
GAACCCCCTTGCGCTAGAAAACCGAAGGCGAGGGCCGGGAGGCATATAGG
TCTGGCAAAGCACTTTGTTTTACTGGAATGGAGGACCTAACAGAAATACA
GACTGACAAGGCCACGAAGGGCTACGAAAGGGACACCCGGGGTGTGAGGC
TGAGGGCCGAGGGGGTGGCTGGCGTACCAATGCCCAACCGATTGGACTTG
GATGGCGCGATAACGAGGACAGCCAGGCTGACAGTGCTGAGCAAAAGGCG
GAGCTTAGTTCTCTACGGTTTTCCTGGGAAGTAATGTTATGTCCCCGTCA
TCGCCCCCCTGGCAGATTGCCTTTATCGTCACCGTTGTGGGCATGCCATA
TACAAGTAGTGTTTACTCCATAGACCGCGAGATTTTCATACTGCAGCCTT
TTGCGGAGATCACATCTGTGTCGTCATCAGCTGCCGGGATTTTGTATTGT
GGCCGATGAAGGTGTTCTGCAACACCCTTTGTGGCTGAGAACCTTTATAG
GTCCCCTTGACCTCCACTGCAACAAGCAAGCTGGTTATCTTGTATCTAAA
ATCGAAACTATGGATACGTTTTGGTAATTGGTTAAACCTACTGACATAAT
CTACGAACGTCTCGACAGACACCCGGAAGCGTGGATTGTGGTCCTTCAAG
AGCGAAGCGGATGATAGTTCTTGAAAGCGAGAAGCGCGGTGCTTCGCGAG
AGGCTCAGCCGATATGTATCGATCATAAAGGGTACGATGATATAATATGT
GGTTAGACTCGTCCTGTGGCTCTAAGTGATCCCGAACGCACAGGCGTCGG
TCGTACCGTTGTTTTTTTGCTTTTGCAGCAGGTGCAGAACGTTGAGTAAA
CCACTTAGCGGTACACCCAAGCTTAGTTCGTTTACACTGTTGGCGATAAA
CTATCTCGAGTTACTCTTACCGAACGTCTAAATCCCACATGTCAATGGCA
GTTATCTTTGTATTGTTGAGGTTGTGTCGCCTTTACTCTCGCCCCCGGAA
ACCTTGGCGAGGAGTCGAAAGGGTGGCTAACCATTGGCCTAGACCGGTAC
CATGTGACACTCGCCCTCCCCAGCCACCGACGCTGACCCGGGCAAAGACT
AGGCGCCCGCCCCGGTTTGATCATTGCCGATTTCACATGCGAAACAATGT
TACACTGTTCGTCACTACCGCAGCTTCTACTCTGTTCCTAGAGTTGGCTA
TCGCGGTTTCCGTTCGCCGTCACCAGTAACTAGCACACTGGACACCCTCC
CAACATAATTGCCGTTTTCCCTAATGTACACACTTTATGAGCGCCATACT
TTTGTCGGCCTTGTTCCTGCTATGCGTCCGAGTCTGCACCGTGCGCACAG
AGATGCGTCGCAACTCCAAGTGCGGTTCTTCACGAATACGGCAGCAACCT
CGCGAAGGCTGTTGACGGGCCGCCTTCTCCGTCATGCCCCCCCCGCTCTC
GTAAATCCCCAATCGGGCAAATAGGGTGCCCTGTGCCCTACCTTGTGGCG
ATTGTTTATTACTACTACCTGGCACACAGCTGTCTTAGCGGTAACATGCT
TGAGGTCTACCTTCAGTAGGGATCAGACCGTTAGTCCCCCCACTTTACAT
TGCAAAGGAAAACCCTTTATCAGTAATTCGAATTTGGGTTTTCCCCCGTT
AGGTCGTAGTAAAGCTCCCCCTCTAGAAACGTTGATGCCTTCCCTACAGA
ATGTTCCAAAATGACATTAACTCAACCTCACACGAGATCGGCCGATTCCT
GGAGTTCCGTCTCCGGTAACCAGCCAACGTACCGTGTTGGTTTCACGCGA
CGGTTCAATGGTTTTCTCTACGTGTTGCCAATGTCTAACCCCGGATTTAC
GTGCACGCCTTTCGTTACAGGTCTCAGCGCTTGTCCAGGAATCGTTTCCA
AACCCGTCTCGCACGGAATTCACACCACTCGCATCAGAAGACAACAGCGA
TCAATCCCGAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig840:7023..11683-

>mRNA_S-dermatodea_contig840.16572.1 ID=mRNA_S-dermatodea_contig840.16572.1|Name=mRNA_S-dermatodea_contig840.16572.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=552bp|location=Sequence derived from alignment at S-dermatodea_contig840:7023..11683- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCGGATGGCAGCAGACGTCAAAGGTTGCTCTGCTCTCGACACTTCACGGA
AGGCCGTCAAGCCGGATGGCAGCAGACGTCAAAGGTTGCTCTGCTCTCGA
CACTTCACGGAAGGCCGTCAAGCTGGAGCATCAGCCGTGGAGGCAGGAGA
TGCCAATGAAGTGGAAGATGAAGCTGGTGGGCAGGTTCTCGCGAAAAAAA
GAAAGCGGACACAGAGGGTCGAGCGCTTCCCACTGCAAGTGCAAAAGCTG
GAGCATCAGCCGTGGAGGCAGGAGATGCCAATGAAGTGGAAGATGAAGCT
GGTGGGCAGGTTCTCGCGAAAAAAAGAAAGCGGACACAGAGGGTCGAGCG
CTTCCCACTGCAAGTGCAAAAGGTCTCAGCGCTTGTCCAGGAATCGTTTC
CAAACCCGTCTCGCACGGAATTCACACCACTCGCATCAGAAGACAACAGC
GATCAATCCCGAGTCTCAGCGCTTGTCCAGGAATCGTTTCCAAACCCGTC
TCGCACGGAATTCACACCACTCGCATCAGAAGACAACAGCGATCAATCCC
GA
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