mRNA_S-dermatodea_contig83972.16569.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig83972.16569.1
Unique NamemRNA_S-dermatodea_contig83972.16569.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig83972.16569.1 vs. uniprot
Match: D7G930_ECTSI (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G930_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 5.430e-22
Identity = 41/48 (85.42%), Postives = 46/48 (95.83%), Query Frame = 1
Query:    1 QFGTAYAASECVKVFDGRFFGGRKLSCHFWDGVTNYTVIEEEEKDEVR 144
            +FGTAYAASECVKVFDGRFFGGRKLSCHFWDGVTNYT+ EE+EK+E +
Sbjct:  564 KFGTAYAASECVKVFDGRFFGGRKLSCHFWDGVTNYTIKEEDEKEEAQ 611          
BLAST of mRNA_S-dermatodea_contig83972.16569.1 vs. uniprot
Match: A0A835ZDG4_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDG4_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 4.720e-13
Identity = 27/48 (56.25%), Postives = 38/48 (79.17%), Query Frame = 1
Query:    1 QFGTAYAASECVKVFDGRFFGGRKLSCHFWDGVTNYTVIEEEEKDEVR 144
            +FGTA+A+ +C+K  DGR+FG RKL CH+WDG+TNY V E+  K++ R
Sbjct:  550 KFGTAFASEQCIKKMDGRWFGKRKLRCHYWDGITNYEVKEDASKEQER 597          
BLAST of mRNA_S-dermatodea_contig83972.16569.1 vs. uniprot
Match: A0A7S3HM95_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HM95_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 1.630e-11
Identity = 24/43 (55.81%), Postives = 33/43 (76.74%), Query Frame = 1
Query:    1 QFGTAYAASECVKVFDGRFFGGRKLSCHFWDGVTNYTVIEEEE 129
            +FGT+YAA EC+++ +GRFF G KL  +FWDGV NY+V  + E
Sbjct:   65 KFGTSYAAQECIRLMNGRFFAGNKLKSYFWDGVANYSVTGQSE 107          
BLAST of mRNA_S-dermatodea_contig83972.16569.1 vs. uniprot
Match: A0A4D9D5D1_9STRA (RRM domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D5D1_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 4.070e-9
Identity = 23/37 (62.16%), Postives = 30/37 (81.08%), Query Frame = 1
Query:    1 QFGTAYAASECVKVFDGRFFGGRKLSCHFWDGVTNYT 111
            +FGTA+AA +CVK+ +GRFF GRKL   +WDG T+YT
Sbjct:  471 KFGTAFAAEQCVKLMNGRFFAGRKLQSFYWDGSTDYT 507          
BLAST of mRNA_S-dermatodea_contig83972.16569.1 vs. uniprot
Match: A0A8K1CI44_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CI44_PYTOL)

HSP 1 Score: 59.3 bits (142), Expect = 5.560e-9
Identity = 25/48 (52.08%), Postives = 36/48 (75.00%), Query Frame = 1
Query:    1 QFGTAYAASECVKVFDGRFFGGRKLSCHFWDGVTNYTVIEEEEKDEVR 144
            +F +  +A++CV V +GRFF GRKL CHFWDG  +YT  E +E+++VR
Sbjct:  460 KFASGGSAAKCVDVMNGRFFAGRKLECHFWDGA-DYTYRESKEEEQVR 506          
BLAST of mRNA_S-dermatodea_contig83972.16569.1 vs. uniprot
Match: A0A7S4NSC6_9EUKA (Hypothetical protein n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4NSC6_9EUKA)

HSP 1 Score: 57.0 bits (136), Expect = 9.210e-9
Identity = 23/44 (52.27%), Postives = 30/44 (68.18%), Query Frame = 1
Query:    4 FGTAYAASECVKVFDGRFFGGRKLSCHFWDGVTNYTVIEEEEKD 135
            F   Y A EC+   DGRFFGGRKL C ++DG+TN+ V E +E +
Sbjct:  100 FEETYDAEECIAKMDGRFFGGRKLECFWYDGITNFNVPESKEME 143          
BLAST of mRNA_S-dermatodea_contig83972.16569.1 vs. uniprot
Match: A0A7R9UAK2_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UAK2_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 3.630e-8
Identity = 24/49 (48.98%), Postives = 36/49 (73.47%), Query Frame = 1
Query:    1 QFGTAYAASECVKVFDGRFFGGRKLSCHFWDGVTNYTVIE---EEEKDE 138
            +F TAYAA EC+++ D + F GR +   +WDGVT+YTV++   EE++DE
Sbjct:  441 KFVTAYAAEECIRLLDNQTFRGRNVRVQYWDGVTDYTVVDTAQEEKRDE 489          
BLAST of mRNA_S-dermatodea_contig83972.16569.1 vs. uniprot
Match: A0A7S1XI24_9STRA (Hypothetical protein n=4 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XI24_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 6.800e-8
Identity = 24/42 (57.14%), Postives = 32/42 (76.19%), Query Frame = 1
Query:    1 QFGTAYAASECVKVFDGRFFGG-RKLSCHFWDGVTNYTVIEE 123
            +F TAYAA E ++V  G  F G RK+SC +WDGVT+YTV++E
Sbjct:  426 KFVTAYAAEEAIRVLHGHMFRGQRKISCIYWDGVTDYTVVDE 467          
BLAST of mRNA_S-dermatodea_contig83972.16569.1 vs. uniprot
Match: A0A482R9X8_9EURY (Uncharacterized protein (Fragment) n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A482R9X8_9EURY)

HSP 1 Score: 53.5 bits (127), Expect = 7.600e-8
Identity = 20/36 (55.56%), Postives = 30/36 (83.33%), Query Frame = 1
Query:    1 QFGTAYAASECVKVFDGRFFGGRKLSCHFWDGVTNY 108
            ++ +A AA+E + VF+GR+FGGR L+C +WDGVTN+
Sbjct:   46 KYRSAGAAAEALAVFNGRYFGGRGLTCEYWDGVTNF 81          
BLAST of mRNA_S-dermatodea_contig83972.16569.1 vs. uniprot
Match: E1Z524_CHLVA (Uncharacterized protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z524_CHLVA)

HSP 1 Score: 55.5 bits (132), Expect = 1.270e-7
Identity = 24/46 (52.17%), Postives = 32/46 (69.57%), Query Frame = 1
Query:    1 QFGTAYAASECVKVFDGRFFGGRKLSCHFWDGVTNYTVIEEEEKDE 138
            +F T  AA ECV+V +GRFFGGR+L    WDG TN+ V  +E ++E
Sbjct:  497 KFTTLEAADECVRVMNGRFFGGRQLEAAKWDGFTNFNVKVQESEEE 542          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig83972.16569.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G930_ECTSI5.430e-2285.42RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835ZDG4_9STRA4.720e-1356.25RRM domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S3HM95_9STRA1.630e-1155.81Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A4D9D5D1_9STRA4.070e-962.16RRM domain-containing protein n=3 Tax=Monodopsidac... [more]
A0A8K1CI44_PYTOL5.560e-952.08Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S4NSC6_9EUKA9.210e-952.27Hypothetical protein n=1 Tax=Paramoeba aestuarina ... [more]
A0A7R9UAK2_9STRA3.630e-848.98Hypothetical protein n=2 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1XI24_9STRA6.800e-857.14Hypothetical protein n=4 Tax=Phaeomonas parva TaxI... [more]
A0A482R9X8_9EURY7.600e-855.56Uncharacterized protein (Fragment) n=1 Tax=Euryarc... [more]
E1Z524_CHLVA1.270e-752.17Uncharacterized protein n=1 Tax=Chlorella variabil... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig83972contigS-dermatodea_contig83972:451..600 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score96.3
Seed ortholog evalue4.4e-18
Seed eggNOG ortholog2880.D7G930
KEGG koko:K13093,ko:K13098
KEGG Pathwayko05202,map05202
EggNOG free text desc.mRNA splicing, via spliceosome
EggNOG OGsKOG1548@1,KOG1548@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03041
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size150
Cds size150
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925339.9656231-CDS-S-dermatodea_contig83972:450..6001622925339.9656231-CDS-S-dermatodea_contig83972:450..600Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig83972 451..600 -
1694079866.675363-CDS-S-dermatodea_contig83972:450..6001694079866.675363-CDS-S-dermatodea_contig83972:450..600Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig83972 451..600 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig83972.16569.1prot_S-dermatodea_contig83972.16569.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig83972 451..600 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig83972.16569.1

>prot_S-dermatodea_contig83972.16569.1 ID=prot_S-dermatodea_contig83972.16569.1|Name=mRNA_S-dermatodea_contig83972.16569.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=50bp
QFGTAYAASECVKVFDGRFFGGRKLSCHFWDGVTNYTVIEEEEKDEVRPV
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mRNA from alignment at S-dermatodea_contig83972:451..600-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig83972.16569.1 ID=mRNA_S-dermatodea_contig83972.16569.1|Name=mRNA_S-dermatodea_contig83972.16569.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=150bp|location=Sequence derived from alignment at S-dermatodea_contig83972:451..600- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGTTCGGCACCGCGTACGCAGCTTCTGAATGTGTGAAGGTCTTCGATGG TCGTTTCTTCGGCGGGCGCAAGCTCTCCTGCCATTTCTGGGACGGCGTAA CGAACTACACTGTCATAGAAGAAGAGGAGAAAGATGAGGTCCGTCCGGTA
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Coding sequence (CDS) from alignment at S-dermatodea_contig83972:451..600-

>mRNA_S-dermatodea_contig83972.16569.1 ID=mRNA_S-dermatodea_contig83972.16569.1|Name=mRNA_S-dermatodea_contig83972.16569.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=300bp|location=Sequence derived from alignment at S-dermatodea_contig83972:451..600- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGTTCGGCACCGCGTACGCAGCTTCTGAATGTGTGAAGGTCTTCGATGG
TCGTTTCTTCGGCGGGCGCAAGCTCTCCTGCCATTTCTGGGACGGCGTAA
CGAACTACACTGTCATAGAAGAAGAGGAGAAAGATGAGGTCCGTCCGGTA
CAGTTCGGCACCGCGTACGCAGCTTCTGAATGTGTGAAGGTCTTCGATGG
TCGTTTCTTCGGCGGGCGCAAGCTCTCCTGCCATTTCTGGGACGGCGTAA
CGAACTACACTGTCATAGAAGAAGAGGAGAAAGATGAGGTCCGTCCGGTA
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