mRNA_S-dermatodea_contig8389.16560.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig8389.16560.1 vs. uniprot
Match: D7FQQ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQQ7_ECTSI) HSP 1 Score: 377 bits (968), Expect = 3.280e-127 Identity = 222/338 (65.68%), Postives = 257/338 (76.04%), Query Frame = 1
Query: 1 MTTAGQRLTAVMEILVKEMVRQSSTRSCAPSSVSIATLRDAKGRRRRPSDQTSTTSLELQRSTGTTCGKSTGGLDAEE----GEILAATGAK-EGQKSPLSMVGGMSTNLLSGGRGDRSAAGETGGGVKERGKTTPLQVGTGGSRSIIGARTDR-QDTTRKVRTSSAKRIHGHSSPPKGGRRSRDAGAVMSKFQFSKDSIRRHQRSRESWIPEDLRMKMMRRSMRVIEENVFENVAQCSLVRKEKKRSSRSELEIVKTQEKFGTKHQRPCALCEQSFSEVNLVLAVPFKVCAFCSQLFHDPLGYRPTWDMETSRLRKKQEHVAREKEREYWDPLRKAS 996
M AGQRLTAVME+LV+E+ ++ RS APSSVSIA+LRD+KGRRR+ ++ +TSLEL RS G KS G + A + +I A + K G +S L GG ++ GGRG S E G KER K +PLQ G SR +GART+ ++ RK TSSAKR HGHSSP KG R S AG V++KFQFSKD+IRR Q S ESWIP+DLRMKM+RR M VI+ENVFE+VA S+VRKEKKRSSRSELEIVKTQEKFGTKHQRPCALCEQSFSEVNLVLAVPFKVCAFCSQLFHDPLGYRPTWDME SR+RKK+E +AREKEREYWDPLRKA+
Sbjct: 1 MAPAGQRLTAVMEVLVRELAQERIVRSRAPSSVSIASLRDSKGRRRQVGNRHMSTSLELPRSLGANLSKSVGDVAATDTGTFSDISAGSIPKTSGHQSALKAEGGSGSDSPPGGRGGGSTMTEAAGDSKERCKMSPLQGKMGASRKNLGARTEGGREVPRKHHTSSAKRGHGHSSPLKGNRAS-SAGGVLNKFQFSKDAIRRQQMSHESWIPDDLRMKMVRRGMAVIKENVFESVAHGSVVRKEKKRSSRSELEIVKTQEKFGTKHQRPCALCEQSFSEVNLVLAVPFKVCAFCSQLFHDPLGYRPTWDMEVSRMRKKREQLAREKEREYWDPLRKAT 337
BLAST of mRNA_S-dermatodea_contig8389.16560.1 vs. uniprot
Match: A0A836CGB7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGB7_9STRA) HSP 1 Score: 122 bits (306), Expect = 1.040e-27 Identity = 73/186 (39.25%), Postives = 100/186 (53.76%), Query Frame = 1
Query: 541 GAVMSKFQFSKDSIRRHQRSRESWIPEDLRMKMMRRSMRVIEENVFENVAQCSLVRKEKKRSSRSELEIVKTQEKFGTKHQRPCALCEQSFSEVNLVLAVPFK-------------------------------------VCAFCSQLFHDPLGYRPTWDMETSRLRKKQEHVAREKEREYWDPLR 987
G +K +R+ Q S+ESWIP DLRMKM+RRS+ + ++V E A + K+ +++R+ LEI K QE+FG + RPCALCEQ FS VNLVLAVP+K VCAFCSQ F +P YRPT +M+ + L+ + ++E+ YWDPLR
Sbjct: 224 GEARAKPMVKASDVRKPQLSQESWIPIDLRMKMLRRSISAVADSVSETAAWEKVRTKQAAKNARTSLEIAKEQERFGRECPRPCALCEQVFSSVNLVLAVPYKAIMDVREHWHEKAPHRLGPPKASHNMKRPPQCYNEVRVCAFCSQQFSEPATYRPTQEMKAAALKDAEAKEEADREKAYWDPLR 409
BLAST of mRNA_S-dermatodea_contig8389.16560.1 vs. uniprot
Match: A0A7S2LA26_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LA26_9STRA) HSP 1 Score: 62.8 bits (151), Expect = 2.860e-7 Identity = 53/174 (30.46%), Postives = 81/174 (46.55%), Query Frame = 1
Query: 520 GRRSRDAGAVMSKFQFSKDSIRRHQRSRESWIPEDLRMKMMRRSMRVIEENVFENVAQC-SLVRKEKKRSSRSELEIVKTQEKFGTKHQRPCALCEQSFSEVNLVLAVPFK--------------------------------------VCAFCSQLFHDPLG-YRPTWDMETS 921
GR+ R A ++ + +S +R +SRESWIPEDLR +M++R V + N +E +C S +E +R LE +++EK+G + +R C LC++ NLVLAV K VC FC+QLF + YRP+W + +
Sbjct: 229 GRKGRRQSAPINVHLINSNSDQRA-KSRESWIPEDLRRRMLKREFSVAKMN-YETREKCQSSNLRELQRCKSDALEKSRSKEKYGIEIKRNCGLCDRPHLSENLVLAVTLKACLDIRDSWGCKYDPEGSSRVRVNPNLRKAPACYNETRVCVFCAQLFDNQQEKYRPSWQAKVA 400 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8389.16560.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig8389.16560.1 >prot_S-dermatodea_contig8389.16560.1 ID=prot_S-dermatodea_contig8389.16560.1|Name=mRNA_S-dermatodea_contig8389.16560.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=332bp MTTAGQRLTAVMEILVKEMVRQSSTRSCAPSSVSIATLRDAKGRRRRPSDback to top mRNA from alignment at S-dermatodea_contig8389:505..3907+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig8389.16560.1 ID=mRNA_S-dermatodea_contig8389.16560.1|Name=mRNA_S-dermatodea_contig8389.16560.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3403bp|location=Sequence derived from alignment at S-dermatodea_contig8389:505..3907+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig8389:505..3907+ >mRNA_S-dermatodea_contig8389.16560.1 ID=mRNA_S-dermatodea_contig8389.16560.1|Name=mRNA_S-dermatodea_contig8389.16560.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1992bp|location=Sequence derived from alignment at S-dermatodea_contig8389:505..3907+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |